View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16607_high_24 (Length: 241)
Name: NF16607_high_24
Description: NF16607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16607_high_24 |
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Alignment Details
Target: chr5 (Bit Score: 168; Significance: 4e-90; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 16 - 223
Target Start/End: Complemental strand, 25719478 - 25719271
Alignment:
| Q |
16 |
aatattgctagaaaaattcaaaaataaactcgcctaaaatcaatgagtcatacctaaaaacgccaagagttgcctgtgtaatcccggcgaaaaacgttgc |
115 |
Q |
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| T |
25719478 |
aatattgctagaggaattcataaataaactcgcctaaaatcaatgagtcatacctaaaaacaccaagagttgcctgtgtaatcccagcgaaaaacgtggc |
25719379 |
T |
|
| Q |
116 |
agtaaaagcaagtcttctatattctgttggatgtgtaatgggatcgatctcattctgtagtaaagtccccaacaagagagaaaccacggccactggtcct |
215 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
25719378 |
agtaaaagcaagtcttctatattctgttggatgtgtattgggatcaatctcattctgtagtaaagtccccaacaagagagaaaccacggccactggccct |
25719279 |
T |
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| Q |
216 |
atggcaat |
223 |
Q |
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|| ||||| |
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| T |
25719278 |
atcgcaat |
25719271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 65 - 217
Target Start/End: Complemental strand, 33298415 - 33298263
Alignment:
| Q |
65 |
atacctaaaaacgccaagagttgcctgtgtaatcccggcgaaaaacgttgcagtaaaagcaagtcttctatattctgttggatgtgtaatgggatcgatc |
164 |
Q |
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|||||| |||| ||||||||||| ||||||||||| || ||||| || || |||||||| || | || ||||||| || ||| |||| ||||| ||| |
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| T |
33298415 |
atacctgaaaatcccaagagttgcttgtgtaatcccagcaaaaaaagtggctgtaaaagccagacgtcgatattcttctgcatgcgtaacaggatcaatc |
33298316 |
T |
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| Q |
165 |
tcattctgtagtaaagtccccaacaagagagaaaccacggccactggtcctat |
217 |
Q |
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||||| || || ||||||||||||||||| ||||| |||||||||||||| |
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| T |
33298315 |
tcattactaagcaatgtccccaacaagagagataccactgccactggtcctat |
33298263 |
T |
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