View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16607_high_30 (Length: 206)

Name: NF16607_high_30
Description: NF16607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16607_high_30
NF16607_high_30
[»] chr2 (7 HSPs)
chr2 (7-188)||(2350913-2351094)
chr2 (9-188)||(2303339-2303518)
chr2 (33-188)||(2310081-2310236)
chr2 (26-188)||(2293743-2293905)
chr2 (8-188)||(2326893-2327073)
chr2 (9-188)||(2321040-2321219)
chr2 (9-188)||(2330609-2330788)


Alignment Details
Target: chr2 (Bit Score: 174; Significance: 8e-94; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 174; E-Value: 8e-94
Query Start/End: Original strand, 7 - 188
Target Start/End: Original strand, 2350913 - 2351094
Alignment:
Q  7 tagataatacttccacggctttgcaatggattatggcaaatttggtgaagtaccccgacgtgcaagggaggcttgtggacgagattagggaggtgatggg 106  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2350913 tagatactacttccacggctttgcaatggattatggcaaatttggtgaagtaccccgacgtgcaagggaggcttgtggacgagattagggaggtgatggg 2351012  T
Q  107 tcatgatggaaatggagagaaggtggaagtgaaagaggaagatttgcagaaacttttgtatctgaaatgtgtggttttggaa 188  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2351013 tcgtgatggaaatggagagaaggtggaagtgaaagaggaagatttgcagaaacttttgtatctgaaatgtgtggttttggaa 2351094  T

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Target: chr2; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 9 - 188
Target Start/End: Original strand, 2303339 - 2303518
Alignment:
Q  9 gataatacttccacggctttgcaatggattatggcaaatttggtgaagtaccccgacgtgcaagggaggcttgtggacgagattagggaggtgatgggtc 108  Q
    |||| |||||||||  ||||||||||||||||||| |||||||| |||||||| || |||||  ||||||||||||| |||||| ||||||||||||||     
T  2303339 gatactacttccactactttgcaatggattatggcgaatttggttaagtacccagaagtgcagaggaggcttgtggaggagattcgggaggtgatgggtg 2303438  T
Q  109 atgatggaaatggagagaaggtggaagtgaaagaggaagatttgcagaaacttttgtatctgaaatgtgtggttttggaa 188  Q
     |||||  ||||||||||||| |||||||||||||||||| ||||||||||||  |||| |||||||||| |||||||||    
T  2303439 gtgatgagaatggagagaaggaggaagtgaaagaggaagaattgcagaaacttcggtatttgaaatgtgttgttttggaa 2303518  T

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Target: chr2; HSP #3
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 33 - 188
Target Start/End: Original strand, 2310081 - 2310236
Alignment:
Q  33 tggattatggcaaatttggtgaagtaccccgacgtgcaagggaggcttgtggacgagattagggaggtgatgggtcatgatggaaatggagagaaggtgg 132  Q
    ||||||||||| ||| ||||||||||||| || ||| | |||||||||||||| |||||| ||||||||||||||  ||||| |||||||||||||| ||    
T  2310081 tggattatggcgaatgtggtgaagtacccagaagtgaaggggaggcttgtggaggagattcgggaggtgatgggtggtgatgaaaatggagagaaggagg 2310180  T
Q  133 aagtgaaagaggaagatttgcagaaacttttgtatctgaaatgtgtggttttggaa 188  Q
    |||||||||||||||| ||||||||||||| |||| |||| |||||||||||||||    
T  2310181 aagtgaaagaggaagacttgcagaaactttggtatttgaagtgtgtggttttggaa 2310236  T

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Target: chr2; HSP #4
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 26 - 188
Target Start/End: Original strand, 2293743 - 2293905
Alignment:
Q  26 tttgcaatggattatggcaaatttggtgaagtaccccgacgtgcaagggaggcttgtggacgagattagggaggtgatgggtcatgatggaaatggagag 125  Q
    |||||| ||||||||||| ||| | ||||||||||| || ||||| |||||||||||||| |||||| ||||||||||||||  ||||| ||||||||||    
T  2293743 tttgcagtggattatggcgaatgtagtgaagtacccagaagtgcaggggaggcttgtggaggagattcgggaggtgatgggtggtgatgaaaatggagag 2293842  T
Q  126 aaggtggaagtgaaagaggaagatttgcagaaacttttgtatctgaaatgtgtggttttggaa 188  Q
    |||| |||||||||||||||||| ||||||||||||  |||| |||| |||||||||||||||    
T  2293843 aaggaggaagtgaaagaggaagacttgcagaaacttcggtatttgaagtgtgtggttttggaa 2293905  T

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Target: chr2; HSP #5
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 8 - 188
Target Start/End: Original strand, 2326893 - 2327073
Alignment:
Q  8 agataatacttccacggctttgcaatggattatggcaaatttggtgaagtaccccgacgtgcaagggaggcttgtggacgagattagggaggtgatgggt 107  Q
    ||||| ||||||||| |||||||| ||||||||||| ||||||||||||||||| ||||| ||| ||||||||||| | |||||||||||| | ||||||    
T  2326893 agatactacttccaccgctttgcattggattatggcgaatttggtgaagtacccggacgttcaaaggaggcttgtgcaggagattagggagttcatgggt 2326992  T
Q  108 catgatggaaatggagagaaggtggaagtgaaagaggaagatttgcagaaacttttgtatctgaaatgtgtggttttggaa 188  Q
      ||||||   || |||||||| |||||||||||||||||| ||||| ||||||  |||| |||| |||||||||||||||    
T  2326993 ggtgatggtgttgtagagaaggaggaagtgaaagaggaagacttgcataaacttcggtatttgaagtgtgtggttttggaa 2327073  T

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Target: chr2; HSP #6
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 9 - 188
Target Start/End: Original strand, 2321040 - 2321219
Alignment:
Q  9 gataatacttccacggctttgcaatggattatggcaaatttggtgaagtaccccgacgtgcaagggaggcttgtggacgagattagggaggtgatgggtc 108  Q
    |||| ||||||||| |||||||| ||||||||||| ||||||||||||||||| || ||||| |||||||||||||| |||||| | |||||||||| |     
T  2321040 gatactacttccactgctttgcagtggattatggcgaatttggtgaagtacccggaagtgcaggggaggcttgtggaggagattcgtgaggtgatggtta 2321139  T
Q  109 atgatggaaatggagagaaggtggaagtgaaagaggaagatttgcagaaacttttgtatctgaaatgtgtggttttggaa 188  Q
     |||||  ||||||||||||| |||||||||||||||| | ||||||||||||   ||| |||| || ||||||||||||    
T  2321140 gtgatgacaatggagagaaggaggaagtgaaagaggaaaacttgcagaaacttcgatatttgaagtgcgtggttttggaa 2321219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 9 - 188
Target Start/End: Original strand, 2330609 - 2330788
Alignment:
Q  9 gataatacttccacggctttgcaatggattatggcaaatttggtgaagtaccccgacgtgcaagggaggcttgtggacgagattagggaggtgatgggtc 108  Q
    |||| ||||||||| |||||||||||||||||||| ||||||||||||||||| ||||| || |||| ||||||||| |||||||  ||||||||||||     
T  2330609 gatactacttccaccgctttgcaatggattatggcgaatttggtgaagtacccggacgttcaggggaagcttgtggaggagattacagaggtgatgggtg 2330708  T
Q  109 atgatggaaatggagagaaggtggaagtgaaagaggaagatttgcagaaacttttgtatctgaaatgtgtggttttggaa 188  Q
      ||||    ||||||||||| |||||||||||||||||| ||||| ||||||  |||| |||| || ||||||||||||    
T  2330709 gcgatgatgctggagagaaggaggaagtgaaagaggaagacttgcataaacttcggtatttgaagtgcgtggttttggaa 2330788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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