View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16607_high_6 (Length: 523)
Name: NF16607_high_6
Description: NF16607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16607_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 491; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 491; E-Value: 0
Query Start/End: Original strand, 19 - 513
Target Start/End: Original strand, 44830386 - 44830880
Alignment:
| Q |
19 |
gtcatcagcttggtcaataaggaaggagagtggagagttctatttgatcctgtacagtcatctatatcatgtagttgtagaaggtttgagacttttggaa |
118 |
Q |
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| T |
44830386 |
gtcatcagcttggtcaataaggaaggagagtggagagttctatttgatcctgtacagtcatctatatcatgtagttgtagaaggtttgagacttttggaa |
44830485 |
T |
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| Q |
119 |
tactttgttgccatgcactaaaagtctttgaggcaaattaatgatgttaaactttgttgccatgcaccaaacatcaatgttaaagaggtggtcaagagat |
218 |
Q |
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| T |
44830486 |
tactttgttgccatgcactaaaagtctttgaggcaaattaatgatgttaaactttgttgccatgcaccaaacatcaatgttaaagaggtggtcaagagat |
44830585 |
T |
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| Q |
219 |
gcacatagtggtattatacatgatgcaaggagaaatgaggttgtggaagatcccaaatcatctataacacaacgatataggcgactttgctcaacaatga |
318 |
Q |
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| T |
44830586 |
gcacatagtggtattatacatgatgcaaggagaaatgaggttgtggaagatcccaaatcatctataacacaacgatataggcgactttgctcaacaatga |
44830685 |
T |
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| Q |
319 |
ttagattggcagccgatgtatccacatctcctacattaatatgaacttgcagacaatgtaatacatgacttgtgtaaattaaacaagcgatggaggttcg |
418 |
Q |
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| T |
44830686 |
ttagattggcagccgatgtatccacatctcctacattaatatgaacttgcagacaatgtaatacatgacttgtgtaaattaaacaagcgatggaggttcg |
44830785 |
T |
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| Q |
419 |
actacaacaaaatgcaacggtcaatgatgaaggtggtgttccgacgatggctgaaccgattgtacagccttcgtcatgtcttctttttgcctatg |
513 |
Q |
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| T |
44830786 |
actacaacaaaatgcaacggtcaatgatgaaggtggtgttccgacgatggctgaaccgattgtacagccttcgtcatgtcttctttttgcttatg |
44830880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 39 - 156
Target Start/End: Complemental strand, 6273340 - 6273223
Alignment:
| Q |
39 |
ggaaggagagtggagagttctatttgatcctgtacagtcatctatatcatgtagttgtagaaggtttgagacttttggaatactttgttgccatgcacta |
138 |
Q |
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| T |
6273340 |
ggaaggagagtggacagtactatttgatccaataactttctctatatcatgtacttgtaaaaaatttgagacttttcgcatactctgttgtcatgcatta |
6273241 |
T |
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| Q |
139 |
aaagtctttgaggcaaat |
156 |
Q |
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| T |
6273240 |
aaagtcattgaggcaaat |
6273223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 39 - 156
Target Start/End: Original strand, 31640952 - 31641069
Alignment:
| Q |
39 |
ggaaggagagtggagagttctatttgatcctgtacagtcatctatatcatgtagttgtagaaggtttgagacttttggaatactttgttgccatgcacta |
138 |
Q |
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| T |
31640952 |
ggaaggagagtggacagtactatttgatccaataactttctctatatcatgtacttgtaaaaaatttgagacttttggcatactctgttgtcatgcatta |
31641051 |
T |
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| Q |
139 |
aaagtctttgaggcaaat |
156 |
Q |
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|||||| ||||||||||| |
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| T |
31641052 |
aaagtcattgaggcaaat |
31641069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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