View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16607_high_8 (Length: 438)
Name: NF16607_high_8
Description: NF16607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16607_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 1 - 423
Target Start/End: Original strand, 1792391 - 1792814
Alignment:
| Q |
1 |
gcacttccccaaattgacctgaaataaaacacnnnnnnnggttgcataatttatgcaaaaactcacaattcccataaggcatgaaactttgcaaaaaagg |
100 |
Q |
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| T |
1792391 |
gcacttccctaaattgacctgaaataaaacacaaaaaaaggttgcataatttatgcaaaaactcacaattcccataaggcatgaaactttgcaaaaaagg |
1792490 |
T |
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| Q |
101 |
catggaagcttatacaaatttgcataacacttaagtacgaaaatgataaagatatcattgaatcacacnnnnnnn-gtcttttattcttgggactttctt |
199 |
Q |
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| T |
1792491 |
catggaagcttatacaaatttgcataacacttaagtacgaaaatgataaagatatcattgaatcacacttttttttgtcttttattcttgggactttctt |
1792590 |
T |
|
| Q |
200 |
aatcgttgtcaaatttagaggaaaacatgggtaaacgtggcaatgacaaaacccttggctcaaagaatgtgcaaaacacaaataactccttgtgcttcac |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
1792591 |
aatcgttgtcaaatttagaggaaaacatgggtaaacgtggcaatgacaaaacccttggttcaaagaatgtgcaaaacacaaataactccttgtgcttcac |
1792690 |
T |
|
| Q |
300 |
ccccttgattctctattctccatgaaaacccacattcttattcttcaaatgcacgcatacctaagcttgtgtgtgaatgagacattctttctttgctatt |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1792691 |
ccccttgattctctattctccatgaaaacccacattcttattcttcaaatgcacgcatacctaagcttgtgtgtgaatgagacattctttctttgctatt |
1792790 |
T |
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| Q |
400 |
tactcagaatgttacctaccatat |
423 |
Q |
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|||||||||||||||||||||||| |
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| T |
1792791 |
tactcagaatgttacctaccatat |
1792814 |
T |
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