View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16607_high_9 (Length: 438)
Name: NF16607_high_9
Description: NF16607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16607_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 38 - 242
Target Start/End: Complemental strand, 39386332 - 39386128
Alignment:
| Q |
38 |
aattcagcagattttgtgtctattattggtcacatggacaagcgagtggagttggacaaaagcatcaaaggtgaagaccctaaatataatgttgctttgt |
137 |
Q |
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| T |
39386332 |
aattcagcagattttgtgtctattattggtcatatggacaagcgagtggagttggacaaaagcatcaaaggtgaagaccctaaatataatgttgctttgt |
39386233 |
T |
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| Q |
138 |
ctatgatggcttctaaagtgtcttacgagaatgaagcttttatacgggacacagttgaaaatcgttggaaggtaaaaattgaacattataaaattctgtt |
237 |
Q |
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| T |
39386232 |
ctatgatggcttctaaagtgtcttacgagaatgaagcttttatacgggacacggttgaaaatcgttggaaggtaaaaattgaacattataaaattctgtt |
39386133 |
T |
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| Q |
238 |
tccct |
242 |
Q |
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||||| |
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| T |
39386132 |
tccct |
39386128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 299 - 428
Target Start/End: Complemental strand, 39386067 - 39385938
Alignment:
| Q |
299 |
tgttctcactccttaatttgtgcttttgcatagatggaagttgtggcatgcggtgactactggaatggtaagagcaaaaattaagcatactattccatca |
398 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39386067 |
tgttctcactccttaatttgtgcttttgcatagatggaagttgtggcatgcggtgactactggaatggtaagagcaaaaattaagcatactattccatca |
39385968 |
T |
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| Q |
399 |
acaaaaagttaaccatactctcccattcat |
428 |
Q |
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| T |
39385967 |
acaaaaagtaaaccatactctcccattcat |
39385938 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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