View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16607_low_11 (Length: 428)
Name: NF16607_low_11
Description: NF16607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16607_low_11 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 339; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 14 - 413
Target Start/End: Complemental strand, 30499471 - 30499065
Alignment:
| Q |
14 |
aggcaaaaagtacacgcgcggggtggggggaagtgggcatagtacgtacggaagatgagtcctgaagggaaactggcattgtctgtctgtcctaccatga |
113 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30499471 |
aggcataaagtacacgcgcggggtggggggaagtgggcatagtacgtacggaagatgagtcctgaagggaaactggcattgtctgtctgtcctaccatga |
30499372 |
T |
|
| Q |
114 |
actaacgaatgcaatgtaatgtaagatcaaatcatgatatcatcaaaaatgcaattctccaaaccttaccaattgaaatgaa-aaaagtttattatacac |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | |
|
|
| T |
30499371 |
actaacgaatgcaatgtaatgtaagatcaaatcatgatatcatcaaaaatgcaattctccaaaccttaccaattgaaatgaaaaaaagtttattatacgc |
30499272 |
T |
|
| Q |
213 |
attgaaaccaaatcaaat------cacattcacaattcaaccctctaaccaacttgcacatttcatttcatttcaacaaaagccacacctacatcacaat |
306 |
Q |
| |
|
||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30499271 |
attgaaatcaaatcaaatatcacacacattcacaattcaaccctctaaccaacttgcacatttcatttcatttcaacaaaagccacacctacatcacaat |
30499172 |
T |
|
| Q |
307 |
ttattatattcccttttcttcacttcatatattacattacaatttctttttcgnnnnnnncaacaactactctatggaagtaattgaagattttcttcgt |
406 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
30499171 |
ttattatattcccttttcttcacttcatatattacattacaatttctttttcgaaaaaaacaacaactactctatggaagtaattggagattttcttcgt |
30499072 |
T |
|
| Q |
407 |
agtttct |
413 |
Q |
| |
|
||||||| |
|
|
| T |
30499071 |
agtttct |
30499065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 97 - 413
Target Start/End: Original strand, 31214435 - 31214761
Alignment:
| Q |
97 |
tgtctgtcctaccatgaactaacgaatgcaatgtaatgtaagatcaaatcatgatatcatcaaaaatgcaattctccaaaccttaccaattgaaatgaaa |
196 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |
|
|
| T |
31214435 |
tgtctgtcctaccatgaactaacgaatgcaatg-----taagatcgaatcatgatatcatcaaaaatgcaattctccaaaccataccaattgaattgaaa |
31214529 |
T |
|
| Q |
197 |
aaagtttattatacacattgaaaccaaatcaaat-----------cacattcacaattcaaccctctaaccaa----cttgcacatttcatttcatttca |
281 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||||| ||||||||||| ||||||| ||||| || |||||||||||||||||||||| |
|
|
| T |
31214530 |
aaagtttaatatacgcattgaaaccaaatcaaatcaaatatcacacacattcacaaatcaaccccctaactaaacttgttgcacatttcatttcatttca |
31214629 |
T |
|
| Q |
282 |
acaaaagccacacctacatcacaatttattatattcccttttcttcacttcatatattacattacaatttctttttcgnnnnnnncaacaactactctat |
381 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| ||||||| |||| || |
|
|
| T |
31214630 |
acaaaagccacacctacatcacaatttattatattcccttttcttcacttcacatattacataacaatttctttttccaaaaaaacaacaacaactcgat |
31214729 |
T |
|
| Q |
382 |
ggaagtaattgaagattttcttcgtagtttct |
413 |
Q |
| |
|
||||||||||| |||||||||||||||||||| |
|
|
| T |
31214730 |
ggaagtaattggagattttcttcgtagtttct |
31214761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 97 - 132
Target Start/End: Complemental strand, 31214908 - 31214873
Alignment:
| Q |
97 |
tgtctgtcctaccatgaactaacgaatgcaatgtaa |
132 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
31214908 |
tgtctgtcctaccatgaactaacgaatgcaatgtaa |
31214873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 368 - 411
Target Start/End: Original strand, 48671477 - 48671520
Alignment:
| Q |
368 |
aacaactactctatggaagtaattgaagattttcttcgtagttt |
411 |
Q |
| |
|
|||||| |||| ||||||||||||||||| |||||||||||||| |
|
|
| T |
48671477 |
aacaacaactcgatggaagtaattgaagactttcttcgtagttt |
48671520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University