View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16607_low_12 (Length: 413)
Name: NF16607_low_12
Description: NF16607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16607_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 152 - 400
Target Start/End: Complemental strand, 38936126 - 38935878
Alignment:
| Q |
152 |
cattgtcattgaacactaatatcaaggactttggaataagtagtagccttaggaatggttatgtaaagaacaccatccttaacctcagccttaatattct |
251 |
Q |
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| T |
38936126 |
cattgtcattgaacactaatatcaaggactttggaataagtagtagccttaggaatggttatgtaaagaacaccatccttaacctcagccttaatattct |
38936027 |
T |
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| Q |
252 |
caaactgcacattctctggcaaagcaattctgctactatacctaccatagctcttagaccattcttcatcttcatcattcttcttcttaggtgctttctc |
351 |
Q |
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| T |
38936026 |
caaactgcacattctctggcaaagcaattctgctactatacctaccatagctcttagaccattcttcatcttcatcattcttcttcttaggtgctttctc |
38935927 |
T |
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| Q |
352 |
agctttcacaaccagcatcttttcttccacccaaaccttaacatcctct |
400 |
Q |
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| T |
38935926 |
agctttcacaaccagcatcttttcttccacccaaaccttaacatcctct |
38935878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 16 - 49
Target Start/End: Complemental strand, 38936263 - 38936230
Alignment:
| Q |
16 |
acttccctccataatagagaggcttcctcacaac |
49 |
Q |
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| T |
38936263 |
acttccctccataatagagaggcttcctcacaac |
38936230 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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