View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16607_low_13 (Length: 394)
Name: NF16607_low_13
Description: NF16607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16607_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 112; Significance: 2e-56; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 71 - 186
Target Start/End: Complemental strand, 14240312 - 14240197
Alignment:
| Q |
71 |
aacaatccctctcttctctccaaaccctcctcaaccattcccagcctttagacccactctacgacgccgtttcaccttcccacctaattcccccaatcgc |
170 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14240312 |
aacaatccctctcttctctccaaaccctcctcaaccattcccaacctttagacccactctacgacgccgtttcaccttcccacctaattcccccaatcgc |
14240213 |
T |
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| Q |
171 |
caccgcaatggattca |
186 |
Q |
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|||||||||||||||| |
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| T |
14240212 |
caccgcaatggattca |
14240197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 308 - 379
Target Start/End: Complemental strand, 14240075 - 14240004
Alignment:
| Q |
308 |
gtcgtgctttcaaaaacactaaccctaaccctaataacaacgctcagcagattcggaagcggagacggaact |
379 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14240075 |
gtcgtgctttcaaaaacactaaccctaaccctaataacaacgctcagcagattcggaagcggagacggaact |
14240004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 104; Significance: 1e-51; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 71 - 186
Target Start/End: Original strand, 49946296 - 49946411
Alignment:
| Q |
71 |
aacaatccctctcttctctccaaaccctcctcaaccattcccagcctttagacccactctacgacgccgtttcaccttcccacctaattcccccaatcgc |
170 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49946296 |
aacaatccctctcttctctccaaaccctcctcaaccattcccaacctttagacccactctacgacgccgtttcaccttcccacctaattcccccaatcga |
49946395 |
T |
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| Q |
171 |
caccgcaatggattca |
186 |
Q |
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|||| ||||||||||| |
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| T |
49946396 |
caccacaatggattca |
49946411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 101; Significance: 6e-50; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 74 - 186
Target Start/End: Original strand, 16728908 - 16729020
Alignment:
| Q |
74 |
aatccctctcttctctccaaaccctcctcaaccattcccagcctttagacccactctacgacgccgtttcaccttcccacctaattcccccaatcgccac |
173 |
Q |
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|||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
16728908 |
aatccctctcttctctccaaaccctcctaaaccattcccaacctttagacccactctacgacgccgtttcaccttcccacctaattcccccaatcgacac |
16729007 |
T |
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| Q |
174 |
cgcaatggattca |
186 |
Q |
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||||||||||||| |
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| T |
16729008 |
cgcaatggattca |
16729020 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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