View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16607_low_14 (Length: 394)
Name: NF16607_low_14
Description: NF16607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16607_low_14 |
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| [»] scaffold0290 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 8 - 377
Target Start/End: Complemental strand, 3556400 - 3556040
Alignment:
| Q |
8 |
cttaacttacttagagttcttgctaatattctagttctcgatgacctacgtcgaggctcaatggtattcc-attcttagatttatcactacccaaacata |
106 |
Q |
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| T |
3556400 |
cttaacctacttaggtttcatactaacatactagttctcgaagacctacgtcgaggctctatggtattcccattcatagatttatcgctacccgaacata |
3556301 |
T |
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| Q |
107 |
aacatgtttaaactctcgtgtgccatacattactgaacaatgccgatgtttgctcatacatttctcttgatagaatcttacgtagtaatgtacatatcac |
206 |
Q |
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| T |
3556300 |
aacatgtttaaactct-gtgtgccatacattaccgaacaatgccgatgtttgctcatacatttctcttgatagaatcttaggtagtaatgtacatatcac |
3556202 |
T |
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| Q |
207 |
ttccaaaaggtataaaaacattgagaatgattagcctggtaaacattaacatcagtttagcaattatagcacaaagggggtactaatttcctaatttcct |
306 |
Q |
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| T |
3556201 |
ttccagaaagtataaaaacattgagaatgattagcatgacaaacattaacataattttagaaattatagcacaaagggg---------tactaatttcct |
3556111 |
T |
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| Q |
307 |
aattcatgacaagcttaacaaagtacatttcctcacataaattaacacaatcccaagggtgggaactaact |
377 |
Q |
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| T |
3556110 |
aattcatgacaagcttaacaaagtacatttcctcacataaattaacacaatcccaagggtgggaacaaact |
3556040 |
T |
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Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 15561671 - 15561600
Alignment:
| Q |
1 |
ttcacaacttaacttacttagagttcttgctaatattctagttctcgatgacctacgtcgaggctcaatggt |
72 |
Q |
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| T |
15561671 |
ttcacagcttaacttacttagagttcttgctaacattctagttctcgacgatctatgtcgaggctctatggt |
15561600 |
T |
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Target: scaffold0290 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0290
Description:
Target: scaffold0290; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 22 - 132
Target Start/End: Complemental strand, 5265 - 5154
Alignment:
| Q |
22 |
agttcttgctaatattctagttctcgatgacctacgtcgaggctcaatggtatt-ccattcttagatttatcactacccaaacataaacatgtttaaact |
120 |
Q |
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| T |
5265 |
agttcatgctaacatactaatgctcgacgacctacgtcgaggctctatggcattaccattcttaggtttatcgctacccgaacatataaatatttaaact |
5166 |
T |
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| Q |
121 |
ctcgtgtgccat |
132 |
Q |
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| T |
5165 |
ctcttgggccat |
5154 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 21888758 - 21888636
Alignment:
| Q |
1 |
ttcacaacttaacttacttagagttcttgctaatattctagttctcgatgacctacgtcgaggctcaatgg---tattccattcttagatttatcactac |
97 |
Q |
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| T |
21888758 |
ttcacgacttaacttacttggagttctttctaccattctagttctcgacgatctatgtcgaggctctatggttttactccactcttag-tttatcgctac |
21888660 |
T |
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| Q |
98 |
ccaaacataaacatgtttaaactctc |
123 |
Q |
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| T |
21888659 |
ccga--ataaacatgcttaaactctc |
21888636 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 43516490 - 43516425
Alignment:
| Q |
1 |
ttcacaacttaacttacttagagttcttgctaatattctagttctcgatgacctacgtcgaggctc |
66 |
Q |
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| T |
43516490 |
ttcacaacttaacttgcttagggttcttgctaactttctagttctcgacgatctatgttgaggctc |
43516425 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 24057758 - 24057698
Alignment:
| Q |
1 |
ttcacaacttaacttacttagagttcttgctaatattctagttctcgatgacctacgtcga |
61 |
Q |
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| T |
24057758 |
ttcacgacttaacttgcttagggttcttgctaactttcttgttctcgacgatctacgtcga |
24057698 |
T |
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