View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16607_low_15 (Length: 386)
Name: NF16607_low_15
Description: NF16607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16607_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 104 - 368
Target Start/End: Complemental strand, 11974708 - 11974444
Alignment:
| Q |
104 |
tattcattgtttgttttgttgttctacatgcatgtttcatacttgtccttgttagtcattatttgattaatcttctaataatttctaattcttgcaacta |
203 |
Q |
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| T |
11974708 |
tattcattgtttgttttgttgttctacatgcatgtttcatacttgtccttgttagtcattatttgattaatctattaataatttctaattcttgcaacta |
11974609 |
T |
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| Q |
204 |
tcatatagttattttatcattttctgcactaattctgtgtttgttcgatcaatattccaaattcttgaaatatgtatttggttttgctacttgttaaagt |
303 |
Q |
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| T |
11974608 |
tc--atagttattttatcattctctgcactaattctgtgttagttcgatcaatattccaaattcttgaaatatgtatttggttttgctacttgttaaatt |
11974511 |
T |
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| Q |
304 |
ttgtt--attttatagcaaacaaacataagttgccaatttaccaaaaacaataaaaaacataagttg |
368 |
Q |
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| T |
11974510 |
ttgtttcattttatagcaaacaaacataagttgccaatttacccaaaaaaataaaaaacataagttg |
11974444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 11974882 - 11974777
Alignment:
| Q |
1 |
ccatctgataagatattagatattagacggctcatattttaactgtgtattttgagttaaatagcgcagtagaaatgtgaggagtctgatcttgtttaga |
100 |
Q |
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| T |
11974882 |
ccatctgataagatattagatattagacggctcatattttaactgtgtattttgagttaaatgacgcagtagaaatgtgagtcgtctgatcttgtttaga |
11974783 |
T |
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| Q |
101 |
tgatat |
106 |
Q |
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| T |
11974782 |
tgatat |
11974777 |
T |
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