View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16607_low_2 (Length: 624)

Name: NF16607_low_2
Description: NF16607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16607_low_2
NF16607_low_2
[»] chr3 (9 HSPs)
chr3 (238-398)||(5565257-5565417)
chr3 (407-540)||(5565170-5565302)
chr3 (324-440)||(31896518-31896633)
chr3 (442-522)||(14175288-14175364)
chr3 (324-440)||(31945875-31945990)
chr3 (306-351)||(13539573-13539618)
chr3 (324-440)||(31912227-31912342)
chr3 (478-515)||(13539487-13539524)
chr3 (324-440)||(31688234-31688349)
[»] chr2 (1 HSPs)
chr2 (29-205)||(274714-274886)
[»] chr8 (1 HSPs)
chr8 (481-578)||(43618600-43618697)
[»] chr7 (1 HSPs)
chr7 (478-530)||(7854246-7854298)
[»] chr4 (1 HSPs)
chr4 (477-538)||(31952902-31952963)
[»] scaffold0007 (1 HSPs)
scaffold0007 (429-507)||(257658-257735)
[»] scaffold0003 (1 HSPs)
scaffold0003 (324-423)||(42747-42845)
[»] chr6 (1 HSPs)
chr6 (324-423)||(27444516-27444614)


Alignment Details
Target: chr3 (Bit Score: 93; Significance: 6e-45; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 238 - 398
Target Start/End: Complemental strand, 5565417 - 5565257
Alignment:
Q  238 aaacaaagatcataatcaacgaatgattcagtattagaaatgaggaatacgaaaactgaaaataacaattaaccttgcaaaataaaagaagcttctgaca 337  Q
    ||||||||||||  ||||| |||||||||||||||||||||||||||||| ||| | |||||||||||||||||||||||||||||||||||||||||||    
T  5565417 aaacaaagatcaacatcaatgaatgattcagtattagaaatgaggaatacaaaagcagaaaataacaattaaccttgcaaaataaaagaagcttctgaca 5565318  T
Q  338 gcgaccccgacgcgttgaggagcgaattccaacgcggtgatcaacaacggtggttcaactc 398  Q
    | |||  |||| || ||| ||||||||||| |||| ||| ||||| |||||||| ||||||    
T  5565317 gtgacatcgacacggtgaagagcgaattccgacgcagtggtcaacgacggtggtgcaactc 5565257  T

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Target: chr3; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 407 - 540
Target Start/End: Complemental strand, 5565302 - 5565170
Alignment:
Q  407 tgaagagcaaattccgatgcgatggtcaacgatggtggtgcaactccgacgtggtggaaagcaagtgggtttttgtagaggatgaagagatgaagacgat 506  Q
    |||||||| |||||||| ||  |||||||||| ||||||||||||||| ||||||||||| |||||||||||| |||||||| |||||||| ||||| ||    
T  5565302 tgaagagcgaattccgacgcagtggtcaacgacggtggtgcaactccggcgtggtggaaaacaagtgggtttt-gtagaggacgaagagattaagactat 5565204  T
Q  507 gatgcttttactttagtgggagaaggctaaaaaa 540  Q
    |||||||||||||||||||||||||||| |||||    
T  5565203 gatgcttttactttagtgggagaaggctgaaaaa 5565170  T

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Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 324 - 440
Target Start/End: Original strand, 31896518 - 31896633
Alignment:
Q  324 agaagcttctgacagcgaccccgacgcgttgaggagcgaattccaacgcggtgatcaacaacggtggttcaactctggtgcgatgaagagcaaattccga 423  Q
    |||||||||| |||||||| | |||||| ||| |||||||| || |||||||||| ||||| |||||| |||||| || ||| | ||||||| |||||||    
T  31896518 agaagcttctaacagcgacactgacgcgatgaagagcgaat-ccgacgcggtgattaacaagggtggtgcaactccggcgcggttaagagcatattccga 31896616  T
Q  424 tgcgatggtcaacgatg 440  Q
     ||| ||||||||||||    
T  31896617 cgcggtggtcaacgatg 31896633  T

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Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 442 - 522
Target Start/End: Original strand, 14175288 - 14175364
Alignment:
Q  442 tggtgcaactccgacgtggtggaaagcaagtgggtttttgtagaggatgaagagatgaagacgatgatgcttttactttag 522  Q
    ||||||||||||| ||||||||||||||| |||| |||||||||||| ||||| ||||||||   ||||||||||||||||    
T  14175288 tggtgcaactccggcgtggtggaaagcaaatggg-ttttgtagaggacgaagaaatgaagac---gatgcttttactttag 14175364  T

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Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 324 - 440
Target Start/End: Original strand, 31945875 - 31945990
Alignment:
Q  324 agaagcttctgacagcgaccccgacgcgttgaggagcgaattccaacgcggtgatcaacaacggtggttcaactctggtgcgatgaagagcaaattccga 423  Q
    |||||||||| |||||||| | | |||| ||| |||||||| || |||||||||| ||||| |||||| |||||| || ||| | ||||||| |||||||    
T  31945875 agaagcttctaacagcgacactggcgcgatgaagagcgaat-ccgacgcggtgattaacaagggtggtgcaactccggcgcggttaagagcatattccga 31945973  T
Q  424 tgcgatggtcaacgatg 440  Q
     ||| ||||||||||||    
T  31945974 cgcggtggtcaacgatg 31945990  T

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Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 306 - 351
Target Start/End: Complemental strand, 13539618 - 13539573
Alignment:
Q  306 ttaaccttgcaaaataaaagaagcttctgacagcgaccccgacgcg 351  Q
    |||||||||||||||||||||||||||||||||| | |||||||||    
T  13539618 ttaaccttgcaaaataaaagaagcttctgacagcaaacccgacgcg 13539573  T

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Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 324 - 440
Target Start/End: Original strand, 31912227 - 31912342
Alignment:
Q  324 agaagcttctgacagcgaccccgacgcgttgaggagcgaattccaacgcggtgatcaacaacggtggttcaactctggtgcgatgaagagcaaattccga 423  Q
    |||||||||| |||||||| | | |||| ||| |||||||| || |||||||||| ||||| |||||| |||||| ||  || | ||||||| |||||||    
T  31912227 agaagcttctaacagcgacactggcgcgatgaagagcgaat-ccgacgcggtgattaacaagggtggtgcaactccggcacggttaagagcatattccga 31912325  T
Q  424 tgcgatggtcaacgatg 440  Q
     ||| ||||||||||||    
T  31912326 cgcggtggtcaacgatg 31912342  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 478 - 515
Target Start/End: Complemental strand, 13539524 - 13539487
Alignment:
Q  478 tttgtagaggatgaagagatgaagacgatgatgctttt 515  Q
    |||| ||||||||||||||||||||| |||||||||||    
T  13539524 tttgcagaggatgaagagatgaagacaatgatgctttt 13539487  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 324 - 440
Target Start/End: Complemental strand, 31688349 - 31688234
Alignment:
Q  324 agaagcttctgacagcgaccccgacgcgttgaggagcgaattccaacgcggtgatcaacaacggtggttcaactctggtgcgatgaagagcaaattccga 423  Q
    |||||||||| |||||||| | | |||| ||| |||||||| |  |||||||||| ||||| |||||| |||||| |  ||| | ||||||| |||| ||    
T  31688349 agaagcttctaacagcgacactggcgcgatgaagagcgaat-ctgacgcggtgattaacaagggtggtgcaactccgacgcggttaagagcatattctga 31688251  T
Q  424 tgcgatggtcaacgatg 440  Q
     ||| ||||||||||||    
T  31688250 cgcggtggtcaacgatg 31688234  T

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Target: chr2 (Bit Score: 84; Significance: 1e-39; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 29 - 205
Target Start/End: Complemental strand, 274886 - 274714
Alignment:
Q  29 agagataattataaacaccagaaaaacttcccacatcaatgctggagtaacnnnnnnnntccttccgaagtagtaagtaggtaaagattacatacaattt 128  Q
    ||||||||||||||||||| ||| | |||||||||||||||||||||||||        |||| | ||||||| ||| || ||| ||||||| |||||||    
T  274886 agagataattataaacaccggaacagcttcccacatcaatgctggagtaacaaaaaaaatcctccagaagtagcaagcagataaggattacaaacaattt 274787  T
Q  129 gtagaagtaaatgaatgattagaagatatacctcatcaccaggcaaggtgctggcaccagtaatggtaatatcttgt 205  Q
     || ||    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  274786 atacaa----atgaatgattggaagatatacctcatcaccaggcaaggtgctggcaccagtaatggtaatatcttgt 274714  T

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Target: chr8 (Bit Score: 74; Significance: 1e-33; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 481 - 578
Target Start/End: Original strand, 43618600 - 43618697
Alignment:
Q  481 gtagaggatgaagagatgaagacgatgatgcttttactttagtgggagaaggctaaaaaattaacgaaatgagggaataagaagaagagtttttgtgt 578  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||  ||||||||| ||||||||||| ||||||||||    
T  43618600 gtagaagatgaagagatgaagacgatgatgcttttactttagtgggagaaggctaaaaaatgaagcaaatgagggcataagaagaagggtttttgtgt 43618697  T

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Target: chr7 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 478 - 530
Target Start/End: Complemental strand, 7854298 - 7854246
Alignment:
Q  478 tttgtagaggatgaagagatgaagacgatgatgcttttactttagtgggagaa 530  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  7854298 tttgcagaggatgaagagatgaagacgatgatgcttttactttagtgggagaa 7854246  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 477 - 538
Target Start/End: Original strand, 31952902 - 31952963
Alignment:
Q  477 ttttgtagaggatgaagagatgaagacgatgatgcttttactttagtgggagaaggctaaaa 538  Q
    |||||||||||||||||||||||||| |||||||  |||| ||||||||||| |||| ||||    
T  31952902 ttttgtagaggatgaagagatgaagatgatgatggctttattttagtgggaggaggccaaaa 31952963  T

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Target: scaffold0007 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 429 - 507
Target Start/End: Complemental strand, 257735 - 257658
Alignment:
Q  429 tggtcaacgatggtggtgcaactccgacgtggtggaaagcaagtgggtttttgtagaggatgaagagatgaagacgatg 507  Q
    ||||||||||  |||||  ||||||| ||||| ||||||||| |||||||| |||||||| ||||| ||||||||||||    
T  257735 tggtcaacgacagtggtttaactccggcgtggaggaaagcaaatgggtttt-gtagaggacgaagaaatgaagacgatg 257658  T

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Target: scaffold0003 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 324 - 423
Target Start/End: Original strand, 42747 - 42845
Alignment:
Q  324 agaagcttctgacagcgaccccgacgcgttgaggagcgaattccaacgcggtgatcaacaacggtggttcaactctggtgcgatgaagagcaaattccga 423  Q
    |||||||||| |||||||| | |  ||| | | |||||||| || |||||||||| ||||||||||||||||||| || ||| | ||||||| |||||||    
T  42747 agaagcttctaacagcgacactggtgcgataaagagcgaat-ccgacgcggtgattaacaacggtggttcaactccggcgcggttaagagcatattccga 42845  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 324 - 423
Target Start/End: Complemental strand, 27444614 - 27444516
Alignment:
Q  324 agaagcttctgacagcgaccccgacgcgttgaggagcgaattccaacgcggtgatcaacaacggtggttcaactctggtgcgatgaagagcaaattccga 423  Q
    |||||||||| |||||||| | |  ||| | | |||||||| || |||||||||| ||||||||||||||||||| || ||| | ||||||| |||||||    
T  27444614 agaagcttctaacagcgacactggtgcgataaagagcgaat-ccgacgcggtgattaacaacggtggttcaactccggcgcggttaagagcatattccga 27444516  T

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