View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16607_low_21 (Length: 281)
Name: NF16607_low_21
Description: NF16607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16607_low_21 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 11 - 265
Target Start/End: Complemental strand, 46734592 - 46734338
Alignment:
| Q |
11 |
ttatactatctaatcacattgaataggattgtaacaataccgcgacaacgatcacaatttaaatcctagattcgatgctgaaagaacaaacctcgagaga |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
46734592 |
ttatactatctaatcacattgaataggattgtaacaataccgcgacaacgatcacaatttaaatcctagattcgatgccgaaagaacaaacctcgagaga |
46734493 |
T |
|
| Q |
111 |
atacaataccttatactatctattcacattgaataggattgtaacataaccgcgacaacaatcacaatttgaaacctagattcgaggctgaaagaacaaa |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46734492 |
atacaataccttatactatctattcacattgaataggattgtaacataaccgcgacaacaatcacaatttgaaacctagattcgaggctgaaagaacaaa |
46734393 |
T |
|
| Q |
211 |
cctagagagaatatgataccttatactatctaattacattgaacagcatactttt |
265 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46734392 |
cctagagagaatatgataccttatactatctaattacattgaacagcatactttt |
46734338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 52 - 253
Target Start/End: Complemental strand, 46734661 - 46734460
Alignment:
| Q |
52 |
gcgacaacgatcacaatttaaatcctagattcgatgctgaaagaacaaacctcgagagaatacaataccttatactatctattcacattgaataggattg |
151 |
Q |
| |
|
||||||||| | ||||||||| ||||||||||||||||||| |||||| || |||||| |||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
46734661 |
gcgacaacggttgcaatttaaaacctagattcgatgctgaaacaacaaatcttgagagaggacaataccttatactatctaatcacattgaataggattg |
46734562 |
T |
|
| Q |
152 |
taacataaccgcgacaacaatcacaatttgaaacctagattcgaggctgaaagaacaaacctagagagaatatgataccttatactatctaattacattg |
251 |
Q |
| |
|
||||| ||||||||||| |||||||||| || ||||||||||| || |||||||||||||| ||||||||| ||||||||||||||||| | |||||| |
|
|
| T |
46734561 |
taacaataccgcgacaacgatcacaatttaaatcctagattcgatgccgaaagaacaaacctcgagagaatacaataccttatactatctattcacattg |
46734462 |
T |
|
| Q |
252 |
aa |
253 |
Q |
| |
|
|| |
|
|
| T |
46734461 |
aa |
46734460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University