View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16607_low_22 (Length: 271)
Name: NF16607_low_22
Description: NF16607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16607_low_22 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 14 - 271
Target Start/End: Complemental strand, 31036759 - 31036502
Alignment:
| Q |
14 |
cactatttgcctgtagagtctttatcatgttaatataacaataaaatnnnnnnngccttatctacacgaggtcaactccatgcatcaaactattcctttg |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31036759 |
cactatttgcctgtagagtctttatcatgttaatataacaataaaataaaaaaagccttatctacacgaggtcaactccatgcatcaaactattcctttg |
31036660 |
T |
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| Q |
114 |
aggtcaacttcatgcatcaaactattcctttttctgacaaaaagcacattttccaactatttatacaatggtcttgtgtaatggaaattattatcatttc |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31036659 |
aggtcaacttcatgcatcaaactattcctttttctgacaaacagcacattttccaactatttatacaatggtcttgtgtaatggaaattattatcatttc |
31036560 |
T |
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| Q |
214 |
acctctacttctttcaatcagactatcttccatttcatccaattttctgccgggagcc |
271 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31036559 |
acttctacttctttcaatcagactatcttccatttcatccaattttctgccgggagcc |
31036502 |
T |
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