View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16607_low_25 (Length: 264)
Name: NF16607_low_25
Description: NF16607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16607_low_25 |
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Alignment Details
Target: chr3 (Bit Score: 145; Significance: 2e-76; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 18 - 217
Target Start/End: Original strand, 18371603 - 18371811
Alignment:
| Q |
18 |
gaataggagccatcagattaaaataaacaaggttgagattataacatacactttcaagacgttcttccttcttctcacgttaactattatccgttcttct |
117 |
Q |
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| T |
18371603 |
gaataggagccatcagattaaaataagcaaggctgagattataacatacaccttcaaggcgttcttccttcttctcacgttaactattatccgttcttct |
18371702 |
T |
|
| Q |
118 |
tcacctcaccttccaccacctaattcggcgcccgcaaccttcaaccaccgta---------cgtcacctccttccaccaccaaatctggtggttaatgat |
208 |
Q |
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| T |
18371703 |
tcacctcaccttccaccacctaattcggcgcccccaaccttcaaccaccgtaggggatcgccgtcacctccttccaccaccaaatttggtggttcatgac |
18371802 |
T |
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| Q |
209 |
gactctctc |
217 |
Q |
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||||||||| |
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| T |
18371803 |
gactctctc |
18371811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 105 - 207
Target Start/End: Complemental strand, 35651454 - 35651345
Alignment:
| Q |
105 |
tatccgttcttcttcacctcaccttccaccacctaattcggcgcccgcaaccttcaaccaccgta-------cgtcacctccttccaccaccaaatctgg |
197 |
Q |
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||||||||||||||| |||||||||||||||||| ||||||||||| |||| ||| ||||||||| |||||||||||||||||| ||||||||| |
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| T |
35651454 |
tatccgttcttcttctcctcaccttccaccacctgattcggcgcccccaactttccaccaccgtagaatcgccgtcacctccttccaccatcaaatctgg |
35651355 |
T |
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| Q |
198 |
tggttaatga |
207 |
Q |
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||||| |||| |
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| T |
35651354 |
tggttcatga |
35651345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 211 - 248
Target Start/End: Original strand, 18371817 - 18371854
Alignment:
| Q |
211 |
ctctctcatgaccacacggtcgtcgccgatgtaccaca |
248 |
Q |
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| T |
18371817 |
ctctctcatgaccacacggtcgtcgccggtgtaccaca |
18371854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 94; Significance: 6e-46; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 15 - 207
Target Start/End: Original strand, 17219083 - 17219282
Alignment:
| Q |
15 |
aatgaataggagccatcagattaaaataaacaaggttgagattataacatacactttcaagacgttcttccttcttctcacgttaactattatccgttct |
114 |
Q |
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||||||| ||||||| ||||||||||| |||| |||||||||||||||||| ||||| | || |||||||||||||||||||| |||||||||||| |
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| T |
17219083 |
aatgaatttgagccattagattaaaataggaaaggctgagattataacatacaccttcaaagcatttttccttcttctcacgttaaccattatccgttct |
17219182 |
T |
|
| Q |
115 |
tcttcacctcaccttccaccacctaattcggcgcccgcaaccttcaaccaccgta-------cgtcacctccttccaccaccaaatctggtggttaatga |
207 |
Q |
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| T |
17219183 |
tcttctcctcacattccaccacctgattcggcgcccccaaccttccaccaccgtagaattgccgtcacctccttcccccaccaaatctggtggttcatga |
17219282 |
T |
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