View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16607_low_29 (Length: 231)
Name: NF16607_low_29
Description: NF16607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16607_low_29 |
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Alignment Details
Target: chr2 (Bit Score: 161; Significance: 5e-86; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 39466617 - 39466843
Alignment:
| Q |
1 |
tcaagaaccttattgttcatttctttgattttcgnnnnnnn-cccagtttctgtagttaaatcatggattctgaggcttctcacaagctaaagttttgtg |
99 |
Q |
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| T |
39466617 |
tcaagaaccttattgttcatttctttgattttcattttttttcccagtttctgtagttaaatcatggattctgaggcttctcacaagctaaaattttgtg |
39466716 |
T |
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| Q |
100 |
gtgatgatgatgggaacttgcatgttaaatggctcacttcttgtgacnnnnnnncatcccattcagatgtgacaaaacatgtttcttgtcaagactttga |
199 |
Q |
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| T |
39466717 |
gtgatgatgatgggaacttgcatgttaaatggctcacttcttgtgaagaaaaaacatcccattcagatgtgacaaaacatgtatcttgtcaagactttga |
39466816 |
T |
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| Q |
200 |
atctgaagattatgatgttgatgatgt |
226 |
Q |
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| T |
39466817 |
atctgaagattatgatgttgatgatgt |
39466843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 101 - 226
Target Start/End: Complemental strand, 39479647 - 39479520
Alignment:
| Q |
101 |
tgatgatgatgggaacttgcatgttaaatggctcacttcttgtgacnnnnnnncatcccattcagatgtgacaa---aacatgtttcttgtcaagacttt |
197 |
Q |
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| T |
39479647 |
tgatgatgatgggaacttaaatgttaaatggatcaattcatgtgacaaaaaagcatcccattcagatgtgatgagggaacctgtttcttgtca-gacttt |
39479549 |
T |
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| Q |
198 |
gaatctgaagattatgatgttgatgatgt |
226 |
Q |
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| T |
39479548 |
gaatctgaacatgatgatgttgatgatgt |
39479520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 43 - 110
Target Start/End: Original strand, 39214481 - 39214548
Alignment:
| Q |
43 |
ccagtttctgtagttaaatcatggattctgaggcttctcacaagctaaagttttgtggtgatgatgat |
110 |
Q |
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| T |
39214481 |
ccagtttctgtagttgaatgatgggtaatgaggcttttgataagctaaaattttgtggtgatgatgat |
39214548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 99
Target Start/End: Original strand, 39151412 - 39151468
Alignment:
| Q |
43 |
ccagtttctgtagttaaatcatggattctgaggcttctcacaagctaaagttttgtg |
99 |
Q |
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| T |
39151412 |
ccagtttctgtagttgaatgatggattttgaagcttctaataagctaaaattttgtg |
39151468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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