View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16607_low_3 (Length: 600)
Name: NF16607_low_3
Description: NF16607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16607_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 245; Significance: 1e-135; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 245; E-Value: 1e-135
Query Start/End: Original strand, 136 - 392
Target Start/End: Complemental strand, 14240453 - 14240197
Alignment:
| Q |
136 |
gcttaaataacttcaaatctcgttctgcacagaccggagtagcgccaccggagatggacaacgaaacaatctcccgcatcgtaacagaaatctccgacct |
235 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
14240453 |
gcttcaataacttcaaatctcgttctgcacagaccggagtagcgccaccggagatggacgacgaaacaatctcccgcatcgtaacagaaatctccgacct |
14240354 |
T |
|
| Q |
236 |
ccgcgaaacccaccacaccgaaaatccacaaccactctccgaacaatccctctcttctctccaaaccctcctcaaccattcccagcctttagacccactc |
335 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
14240353 |
ccgcgaaacccaccacaccgaaaatccacaaccactctccgaacaatccctctcttctctccaaaccctcctcaaccattcccaacctttagacccactc |
14240254 |
T |
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| Q |
336 |
tacgacgccgtttcaccttcccacctaattcccccaatcgccaccgcaatggattca |
392 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14240253 |
tacgacgccgtttcaccttcccacctaattcccccaatcgccaccgcaatggattca |
14240197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 14240588 - 14240481
Alignment:
| Q |
1 |
aagataatttaactgattttaattgaagtttaggatcattatgacaacaacacattaagctcctaaaatgatggtttgctcttgttttcactttcccaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14240588 |
aagataatttaactgattttaattgaagtttaggatcattatgacaactacacattaagctcctaaaatgatggtttgctcttgttttcactttcccaaa |
14240489 |
T |
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| Q |
101 |
gcgggaac |
108 |
Q |
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|||||||| |
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| T |
14240488 |
gcgggaac |
14240481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 514 - 585
Target Start/End: Complemental strand, 14240075 - 14240004
Alignment:
| Q |
514 |
gtcgtgctttcaaaaacactaaccctaaccctaataacaacgctcagcagattcggaagcggagacggaact |
585 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14240075 |
gtcgtgctttcaaaaacactaaccctaaccctaataacaacgctcagcagattcggaagcggagacggaact |
14240004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 235; Significance: 1e-129; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 235; E-Value: 1e-129
Query Start/End: Original strand, 142 - 392
Target Start/End: Original strand, 49946161 - 49946411
Alignment:
| Q |
142 |
ataacttcaaatctcgttctgcacagaccggagtagcgccaccggagatggacaacgaaacaatctcccgcatcgtaacagaaatctccgacctccgcga |
241 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49946161 |
ataacttcaaatctcgttctgcacagaccggagtagcgccaccggagatggacgacgaaacaatctcccgcatcgtaacagaaatctccgacctccgcga |
49946260 |
T |
|
| Q |
242 |
aacccaccacaccgaaaatccacaaccactctccgaacaatccctctcttctctccaaaccctcctcaaccattcccagcctttagacccactctacgac |
341 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
49946261 |
aacccaccacaccgaaaatccacaaccactctccgaacaatccctctcttctctccaaaccctcctcaaccattcccaacctttagacccactctacgac |
49946360 |
T |
|
| Q |
342 |
gccgtttcaccttcccacctaattcccccaatcgccaccgcaatggattca |
392 |
Q |
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|||||||||||||||||||||||||||||||||| |||| ||||||||||| |
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| T |
49946361 |
gccgtttcaccttcccacctaattcccccaatcgacaccacaatggattca |
49946411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 136 - 392
Target Start/End: Original strand, 16728764 - 16729020
Alignment:
| Q |
136 |
gcttaaataacttcaaatctcgttctgcacagaccggagtagcgccaccggagatggacaacgaaacaatctcccgcatcgtaacagaaatctccgacct |
235 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| |
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| T |
16728764 |
gcttcaataacttcaaatctcgttctgcacagaccggagtagcgccaccggagatggacgacgaaacaatctcccgcattataacagaaatctccgacct |
16728863 |
T |
|
| Q |
236 |
ccgcgaaacccaccacaccgaaaatccacaaccactctccgaacaatccctctcttctctccaaaccctcctcaaccattcccagcctttagacccactc |
335 |
Q |
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||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| |
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| T |
16728864 |
acgcgaaacccaccacactgaaaatccacaaccactctccgaaaaatccctctcttctctccaaaccctcctaaaccattcccaacctttagacccactc |
16728963 |
T |
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| Q |
336 |
tacgacgccgtttcaccttcccacctaattcccccaatcgccaccgcaatggattca |
392 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
16728964 |
tacgacgccgtttcaccttcccacctaattcccccaatcgacaccgcaatggattca |
16729020 |
T |
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