View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16607_low_30 (Length: 227)
Name: NF16607_low_30
Description: NF16607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16607_low_30 |
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Alignment Details
Target: chr8 (Bit Score: 200; Significance: 1e-109; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 11975135 - 11974920
Alignment:
| Q |
1 |
tttgaaatagttaagcaattagcttcggctggaatcaaagtagtgcttacagcaagagatgagaaaagaggtcttcatgctttggaaacactcaaagcct |
100 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
11975135 |
tttgaaatagttaagcaattagcttcagctggaatcaaagtggtgcttacagcaagagatgagaaaagaggtcttcatgctttgcaaacactcaaagcct |
11975036 |
T |
|
| Q |
101 |
atggtttatctgattttgttgcctttcatcaactagatgtggctgatgatgcaagtgtagcctctcttgcaaattttgtcaaatcacaatttggcaaact |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
11975035 |
atggtttatctgattttgttgcctttcatcaactagatgtggctgatgatgcaagtgtagcctctcttgcagattttgtcaaatcacaatttggcaaact |
11974936 |
T |
|
| Q |
201 |
tgatattttggtatga |
216 |
Q |
| |
|
|||||||||||||||| |
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|
| T |
11974935 |
tgatattttggtatga |
11974920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 15 - 213
Target Start/End: Complemental strand, 12004945 - 12004747
Alignment:
| Q |
15 |
gcaattagcttcggctggaatcaaagtagtgcttacagcaagagatgagaaaagaggtcttcatgctttggaaacactcaaagcctatggtttatctgat |
114 |
Q |
| |
|
|||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |
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|
| T |
12004945 |
gcaattagcttcagctggaatcaaagtggtgcttacagcaagagatgagaaaagaggtcttcatgctttggaaacactcaaagcatctggtttatctgat |
12004846 |
T |
|
| Q |
115 |
tttgttgcctttcatcaactagatgtggctgatgatgcaagtgtagcctctcttgcaaattttgtcaaatcacaatttggcaaacttgatattttggta |
213 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||| ||||| |
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| T |
12004845 |
tttgttgtatttcatcaactagatgtggctgatgctgcaagtgtagcctctcttgcagattttatcaaatctcaatttggcaaacttgatattctggta |
12004747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 12014626 - 12014414
Alignment:
| Q |
1 |
tttgaaatagttaagcaattagcttcggctggaatcaaagtagtgcttacagcaagagatgagaaaagaggtcttcatgctttggaaacactcaaagcct |
100 |
Q |
| |
|
||||| ||||||||||| |||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
12014626 |
tttgagatagttaagcagttagcttcagctggaatcaaagtggtgcttactgcaagagatgagaaaagaggtcttcatgctttggaaacactcaaagcct |
12014527 |
T |
|
| Q |
101 |
atggtttatctgattttgttgcctttcatcaactagatgtggctgatgatgcaagtgtagcctctcttgcaaattttgtcaaatcacaatttggcaaact |
200 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||| ||||||| |||||||||||| |||||||| | ||||||||||| | |||||||||||| |
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|
| T |
12014526 |
ctggtttatctgattttgttgtatttcatcaactagatgttgctgatgctgcaagtgtagcttctcttgcggaatttgtcaaatctcgatttggcaaact |
12014427 |
T |
|
| Q |
201 |
tgatattttggta |
213 |
Q |
| |
|
||||||| ||||| |
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|
| T |
12014426 |
tgatattctggta |
12014414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 11984567 - 11984355
Alignment:
| Q |
1 |
tttgaaatagttaagcaattagcttcggctggaatcaaagtagtgcttacagcaagagatgagaaaagaggtcttcatgctttggaaacactcaaagcct |
100 |
Q |
| |
|
||||| ||||||||||| |||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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|
| T |
11984567 |
tttgagatagttaagcagttagcttcagctggaatcaaagttgtgcttacagcaagagatgagaaaagaggtcttcatgctttggaaacactcaaagctt |
11984468 |
T |
|
| Q |
101 |
atggtttatctgattttgttgcctttcatcaactagatgtggctgatgatgcaagtgtagcctctcttgcaaattttgtcaaatcacaatttggcaaact |
200 |
Q |
| |
|
|||| | || |||||||||| |||| ||||| ||||||||||| ||| |||||||||||| |||||||| ||||||||||||| |||||||||||||| |
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|
| T |
11984467 |
ctggtctttcagattttgttgtcttttatcaagtagatgtggctaatgctgcaagtgtagctactcttgcagattttgtcaaatcgcaatttggcaaact |
11984368 |
T |
|
| Q |
201 |
tgatattttggta |
213 |
Q |
| |
|
||||||| ||||| |
|
|
| T |
11984367 |
tgatattctggta |
11984355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 15 - 213
Target Start/End: Complemental strand, 11980196 - 11979998
Alignment:
| Q |
15 |
gcaattagcttcggctggaatcaaagtagtgcttacagcaagagatgagaaaagaggtcttcatgctttggaaacactcaaagcctatggtttatctgat |
114 |
Q |
| |
|
|||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| | ||||||||||||| |
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|
| T |
11980196 |
gcaattagcttcagctggaatcaaagtggtgcttacagcaagagatgagaaaagaggtcttcatgcattggaaacacttaaagcatctggtttatctgat |
11980097 |
T |
|
| Q |
115 |
tttgttgcctttcatcaactagatgtggctgatgatgcaagtgtagcctctcttgcaaattttgtcaaatcacaatttggcaaacttgatattttggta |
213 |
Q |
| |
|
||||||| |||||||||||||||||||| ||| |||||||||||| |||||||| ||||||||||||| ||||||||||||||||||||| ||||| |
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|
| T |
11980096 |
tttgttgtatttcatcaactagatgtggcaaatgctgcaagtgtagctactcttgcagattttgtcaaatcccaatttggcaaacttgatattctggta |
11979998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 7 - 213
Target Start/End: Complemental strand, 12010045 - 12009839
Alignment:
| Q |
7 |
atagttaagcaattagcttcggctggaatcaaagtagtgcttacagcaagagatgagaaaagaggtcttcatgctttggaaacactcaaagcctatggtt |
106 |
Q |
| |
|
|||||||| || |||||||| ||| |||||||||| ||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| | ||||| |
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|
| T |
12010045 |
atagttaaacagttagcttcagctagaatcaaagtggtgctcacatcaagagatgagaaaagaggtcttcatgctttggaaacactcaaagcatctggtt |
12009946 |
T |
|
| Q |
107 |
tatctgattttgttgcctttcatcaactagatgtggctgatgatgcaagtgtagcctctcttgcaaattttgtcaaatcacaatttggcaaacttgatat |
206 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| ||| ||||||| ||||| | |||||||||||||||||| |
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|
| T |
12009945 |
tatctgattttgttgtatttcatcaactagatgtggctgatgccgcaagtgtagcctctctcgcagattttgttaaatctcgatttggcaaacttgatat |
12009846 |
T |
|
| Q |
207 |
tttggta |
213 |
Q |
| |
|
| ||||| |
|
|
| T |
12009845 |
tctggta |
12009839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 7 - 212
Target Start/End: Complemental strand, 11992068 - 11991863
Alignment:
| Q |
7 |
atagttaagcaattagcttcggctggaatcaaagtagtgcttacagcaagagatgagaaaagaggtcttcatgctttggaaacactcaaagcctatggtt |
106 |
Q |
| |
|
||||| ||||| |||||||| |||| ||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| | |||| |
|
|
| T |
11992068 |
atagtaaagcagttagcttcagctgtaatcaaagtggtgcttacatcaagagatgagaaaagaggtcttcatgctttggaaacacttaaagcttctggtc |
11991969 |
T |
|
| Q |
107 |
tatctgattttgttgcctttcatcaactagatgtggctgatgatgcaagtgtagcctctcttgcaaattttgtcaaatcacaatttggcaaacttgatat |
206 |
Q |
| |
|
| ||||||||||||| ||||||||||||||||| ||||||| | |||||||||| ||||||||| ||||||||||||| |||||||| ||||||||||| |
|
|
| T |
11991968 |
tttctgattttgttgtatttcatcaactagatgttgctgatgcttcaagtgtagcatctcttgcagattttgtcaaatctcaatttggaaaacttgatat |
11991869 |
T |
|
| Q |
207 |
tttggt |
212 |
Q |
| |
|
| |||| |
|
|
| T |
11991868 |
tctggt |
11991863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 11999741 - 11999529
Alignment:
| Q |
1 |
tttgaaatagttaagcaattagcttcggctggaatcaaagtagtgcttacagcaagagatgagaaaagaggtcttcatgctttggaaacactcaaagcct |
100 |
Q |
| |
|
||||| ||||| | ||| |||||||| | |||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
11999741 |
tttgagatagtaaggcagttagcttcagatggaatcaaagttgtgctgacagcaagagatgagaaaagaggtcttcatgctttggaaacactcaaagctt |
11999642 |
T |
|
| Q |
101 |
atggtttatctgattttgttgcctttcatcaactagatgtggctgatgatgcaagtgtagcctctcttgcaaattttgtcaaatcacaatttggcaaact |
200 |
Q |
| |
|
|||| | || ||||||||| ||||||||||||||||| ||||||| | |||||||||| ||||||||| ||||||||||||| || ||||||||||| |
|
|
| T |
11999641 |
ctggtctttcagattttgttttatttcatcaactagatgttgctgatgcttcaagtgtagcatctcttgcagattttgtcaaatcccattttggcaaact |
11999542 |
T |
|
| Q |
201 |
tgatattttggta |
213 |
Q |
| |
|
||||||| ||||| |
|
|
| T |
11999541 |
tgatattctggta |
11999529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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