View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16607_low_4 (Length: 541)
Name: NF16607_low_4
Description: NF16607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16607_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 497; Significance: 0; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 497; E-Value: 0
Query Start/End: Original strand, 18 - 526
Target Start/End: Original strand, 17953344 - 17953852
Alignment:
| Q |
18 |
cctacaacttcatacgatgtactccagagttgaataaacattatgaaatgcttgtgaaatctatggattatagttggtctcctaagctgaaattattttg |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17953344 |
cctacaacttcatacgatgtactccagagttgaataaacattatgaaatgcttgtgaaatctatggattatagttggtctcctaagctgaaattattttg |
17953443 |
T |
|
| Q |
118 |
gaaaatataaatagatactaagcaattagattctcactttattcacaaaagcatgtctaattattttggcaaagtgtgtgttttttaagtaagagtcata |
217 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17953444 |
gaaaatataaacagatactaagcaattagattctcactttattcacaaaagcatgtctaattattttggcaaagtgtgtgttttttaagtaagagtcata |
17953543 |
T |
|
| Q |
218 |
agatgtagtgtttaattccgtttatttagtttttcgtagcttaatgtgatgatcattggactcctctcatgacccaacacattgcaataaacgtgaacat |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17953544 |
agatgtagtgtttaattccgtttatttagtttttcgtagcttaatgtgatgattattggactcctctcatgacccaacacattgcaataaacgtgaacat |
17953643 |
T |
|
| Q |
318 |
catttggattaaaataaacaaaacttcataatgatgacaaaaatttatttgacatcaaagtaatttcccacataacgattgttggtcctgatagaaaaga |
417 |
Q |
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| T |
17953644 |
catttcgattaaaataaacaaaacttcataatgatgacaaaaatttatttgacatcaaagtaatttcccacataacgattgttggtcctgatagaaaaga |
17953743 |
T |
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| Q |
418 |
acaatgtacaagaaaagaaaaacaatgaggataataatgtcaatctgaaatgactagtctagtttgaaaaaagaataaagatatgcaaatttgtcacgac |
517 |
Q |
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| T |
17953744 |
acaatgtacaagaaaagaaaaacaatgaggataataatgtcaatctgaaatgactagtctagtttgaaaaaagaataaagatatgcaaatttgtcacgac |
17953843 |
T |
|
| Q |
518 |
accattcat |
526 |
Q |
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||||||||| |
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| T |
17953844 |
accattcat |
17953852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 58 - 158
Target Start/End: Complemental strand, 17721903 - 17721804
Alignment:
| Q |
58 |
ttatgaaatgcttgtgaaatctatggattatagttggtctcctaagctgaaattattttggaaaatataaatagatactaagcaattagattctcacttt |
157 |
Q |
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| T |
17721903 |
ttatgaaatgattgtgaaatctatggattatagttggtctcctaagctgaaattatcttggaaaacataaa-agatactaagcaattagattctcacttt |
17721805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 58 - 158
Target Start/End: Complemental strand, 19023132 - 19023033
Alignment:
| Q |
58 |
ttatgaaatgcttgtgaaatctatggattatagttggtctcctaagctgaaattattttggaaaatataaatagatactaagcaattagattctcacttt |
157 |
Q |
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| T |
19023132 |
ttatgaaatgattgtgaaatctatggattatagttggtctcctaagctgaaattatcttggaaaacataaa-agatactaagcaattagattctcacttt |
19023034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 228 - 305
Target Start/End: Complemental strand, 17721807 - 17721730
Alignment:
| Q |
228 |
tttaattccgtttatttagtttttcgtagcttaatgtgatgatcattggactcctctcatgacccaacacattgcaat |
305 |
Q |
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| T |
17721807 |
tttagttccgcttatttagtttttcgtagcttaatatgatgatcattaggctcctctcatgacccaacacatttcaat |
17721730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 228 - 305
Target Start/End: Complemental strand, 19023036 - 19022959
Alignment:
| Q |
228 |
tttaattccgtttatttagtttttcgtagcttaatgtgatgatcattggactcctctcatgacccaacacattgcaat |
305 |
Q |
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| T |
19023036 |
tttagttccgcttatttagtttttcgtagcttaatatgatgatcattaggctcctctcatgacccaacacatttcaat |
19022959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 36 - 124
Target Start/End: Complemental strand, 15021125 - 15021036
Alignment:
| Q |
36 |
gtactccagagttgaataaacattatgaaatgcttgtgaaatctatggattatagttggtctcctaagc-tgaaattattttggaaaata |
124 |
Q |
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||||||| |||||||| ||||||||||||||||||||||| |||| |||| | |||||||||||||| ||||| |||||||||||||| |
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| T |
15021125 |
gtactcctgagttgaaaaaacattatgaaatgcttgtgaagtctaaggatcaggtttggtctcctaagcttgaaactattttggaaaata |
15021036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 388 - 516
Target Start/End: Complemental strand, 17721493 - 17721376
Alignment:
| Q |
388 |
cataacgattgttggtcctgatagaaaagaacaatgtacaagaaaagaaaaacaatgaggataataatgtcaatctgaaatgactagtctagtttgaaaa |
487 |
Q |
| |
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|||||| ||||||||| ||||||||||||||||||||||| || ||||| | ||||||| ||||||||||||||| ||||||||| ||| |
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| T |
17721493 |
cataacaattgttggtgctgatagaaaagaacaatgtacatga----------gatgagattcataatgttaatctgaaatgactaatctagtttg-aaa |
17721405 |
T |
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| Q |
488 |
aagaataaagatatgcaaatttgtcacga |
516 |
Q |
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|||||||||||||||||||| | |||||| |
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| T |
17721404 |
aagaataaagatatgcaaatatttcacga |
17721376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 388 - 516
Target Start/End: Complemental strand, 19022722 - 19022605
Alignment:
| Q |
388 |
cataacgattgttggtcctgatagaaaagaacaatgtacaagaaaagaaaaacaatgaggataataatgtcaatctgaaatgactagtctagtttgaaaa |
487 |
Q |
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|||||| ||||||||| ||||||||||||||||||||||| || ||||| | ||||||| ||||||||||||||| ||||||||| ||| |
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| T |
19022722 |
cataacaattgttggtgctgatagaaaagaacaatgtacatga----------gatgagattcataatgttaatctgaaatgactaatctagtttg-aaa |
19022634 |
T |
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| Q |
488 |
aagaataaagatatgcaaatttgtcacga |
516 |
Q |
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| T |
19022633 |
aagaataaagatatgcaaatatttcacga |
19022605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 36 - 122
Target Start/End: Original strand, 49160738 - 49160825
Alignment:
| Q |
36 |
gtactccagagttgaataaacattatgaaatgcttgtgaaatctatggattatagttggtctcctaagc-tgaaattattttggaaaa |
122 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||| || | |||||||||||||||| ||||| |||||||||||| |
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| T |
49160738 |
gtactcctgagttgaataaacattatgaaatgcttgtgaaatctatgaatcagagttggtctcctaagcttgaaactattttggaaaa |
49160825 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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