View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16607_low_7 (Length: 507)
Name: NF16607_low_7
Description: NF16607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16607_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 418; Significance: 0; HSPs: 14)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 5 - 488
Target Start/End: Complemental strand, 13872458 - 13871969
Alignment:
| Q |
5 |
ggtagattattctttagaagattttatcgtgtatgtgtacatgggtggcattaaaaatgttcgtttcaagcacttatggataagataaacaagaagtttg |
104 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13872458 |
ggtaaattattctttagaagattttatcgtgtatgtgtacatgggtgacattaaaaatgttcgtttcaagcacttatggataagataaacaagaagtttg |
13872359 |
T |
|
| Q |
105 |
cattaagggaaacaaatttaaaattagtaggatggataaatagtttgattaagcacttttaaactttttgtttataccaggcatcgctacaaataatcaa |
204 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
13872358 |
cattaagggaaacaaatttaaaattagtagaatggataaatagtttgattaagcacttttaaaatttttgtttataccaggcatcgctacaaataatcaa |
13872259 |
T |
|
| Q |
205 |
tggcctcatttccttgttaattgtgtttataggaagtgatcactacacttgttgaagttcttggtaattg----tctgt--cattctgttgtcggagtgt |
298 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | | |||||||| ||| |
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| T |
13872258 |
tggccccatttccttgttaattgtgtttataggaagtgatcactacacttgttgaagttcttggtaattgtcattctgttgccgtaacttgtcggattgt |
13872159 |
T |
|
| Q |
299 |
caaatcatagtattgatagcataatttcatttttaactgttttatggaactatcaagtgatcacctcacttgttaagttctttgtaattgtctttctccg |
398 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13872158 |
caaatcatagtattgatagcataatttcatttttaactgttttatggaactatcaagtgatcacctcacttgttaagttctttgtaattgtctttctccg |
13872059 |
T |
|
| Q |
399 |
gcattcctacgagtaatgtactgctgaatgtttgtttctttatcatggtttagagtggtgattctgcaagaccacttgaccaggtacatt |
488 |
Q |
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| T |
13872058 |
gcattcctacgagtaatgtactgctgaatgtttgtttctttatcatggtttagagtggtgattctgcaagaccacttgaccaggtacatt |
13871969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 169 - 469
Target Start/End: Complemental strand, 13884584 - 13884268
Alignment:
| Q |
169 |
tttttgtttataccaggcatcgctacaaataatcaatggcctcatttccttgttaattgtgtttataggaagtgatcactacacttgttgaagttcttgg |
268 |
Q |
| |
|
||||||||||||| | |||| || ||| |||| |||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
13884584 |
tttttgtttatacga--catcactgcaagtaattaatggcttcatttccttgttaattgtgtttatgggaagtgatcactacacttgttgaagttcttgg |
13884487 |
T |
|
| Q |
269 |
taattgtctgtcat------tctgttgtcggagtgtcaaatcatagtattgatagcataatttcatttttaactgttttatggaacta------------ |
350 |
Q |
| |
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|||||||| || | ||||| | ||||||||| |||| |||||||||||||||| ||| |||||||||||||||||| |
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| T |
13884486 |
taattgtcattctggtgccgtaagttgttagtttgtcaaatcttagttttgatagcataatttccttt--aactgttttatggaactaacaagtgagaac |
13884389 |
T |
|
| Q |
351 |
--tcaagtgatcacctcacttgttaagttctttgtaattgtctttctccggcattcctacgagtaatgtactgctgaatgtttgtttctttatcatggtt |
448 |
Q |
| |
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||||||||||||||||||||| |||||||||||||||||||||||||||||| || ||||||||||| |||||||||| || |||||||||||||||| |
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| T |
13884388 |
tatcaagtgatcacctcacttgtgaagttctttgtaattgtctttctccggcatcccaacgagtaatgtcctgctgaatgcttctttctttatcatggtt |
13884289 |
T |
|
| Q |
449 |
tagagtggtgattctgcaaga |
469 |
Q |
| |
|
||| || ||||| ||||||| |
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|
| T |
13884288 |
taggttgatgattttgcaaga |
13884268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 322 - 472
Target Start/End: Complemental strand, 13882607 - 13882457
Alignment:
| Q |
322 |
atttcatttttaactgttttatggaactatcaagtgatcacctcacttgttaagttctttgtaattgtctttctccggcattcctacgagtaatgtactg |
421 |
Q |
| |
|
|||||||||||||||||||||||| ||||| |||||| ||||||||||||||||||||||||||||||||||| || | ||| | ||||||||| |
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| T |
13882607 |
atttcatttttaactgttttatgggactatactgtgatcctctcacttgttaagttctttgtaattgtctttctccagcgtcattacatgcaatgtactg |
13882508 |
T |
|
| Q |
422 |
ctgaatgtttgtttctttatcatggtttagagtggtgattctgcaagacca |
472 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
13882507 |
ctgaatgtttgtttctttatcatggtttagagtggtgattttgcaagacca |
13882457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 203 - 276
Target Start/End: Original strand, 12957646 - 12957719
Alignment:
| Q |
203 |
aatggcctcatttccttgttaattgtgtttataggaagtgatcactacacttgttgaagttcttggtaattgtc |
276 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||| ||||||||| ||||||||||||||||||||| |
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| T |
12957646 |
aatggcctcatttccttgttaattgtgtttatgggaagtgattactacactttttgaagttcttggtaattgtc |
12957719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 96 - 162
Target Start/End: Complemental strand, 13876736 - 13876670
Alignment:
| Q |
96 |
agaagtttgcattaagggaaacaaatttaaaattagtaggatggataaatagtttgattaagcactt |
162 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| |
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|
| T |
13876736 |
agaagtttgcattaagggaaacaaatttaaaattagtaagatggataaatagtttgattaaacactt |
13876670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 311 - 421
Target Start/End: Complemental strand, 16025153 - 16025043
Alignment:
| Q |
311 |
ttgatagcataatttcatttttaactgttttatggaactatcaagtgatcacctcacttgttaagttctttgtaattgtctttctccggcattcctacga |
410 |
Q |
| |
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||||||||| |||||||||||||||||||||||| |||||||| ||||| | |||||| ||||||||| |||||||||||||||||||| |||||| |
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| T |
16025153 |
ttgatagcaccatttcatttttaactgttttatgggactatcaaatgatcgatttacttgtgaagttctttataattgtctttctccggcatcactacga |
16025054 |
T |
|
| Q |
411 |
gtaatgtactg |
421 |
Q |
| |
|
|| |||||||| |
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|
| T |
16025053 |
gtgatgtactg |
16025043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 296 - 386
Target Start/End: Complemental strand, 13874491 - 13874401
Alignment:
| Q |
296 |
tgtcaaatcatagtattgatagcataatttcatttttaactgttttatggaactatcaagtgatcacctcacttgttaagttctttgtaat |
386 |
Q |
| |
|
||||||||||||| ||||||| ||| |||| ||||| || |||||| || |||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
13874491 |
tgtcaaatcatagcattgataacatcatttaattttcaatggttttacgggactatcaagtgatcccctcacttgttaagttctttgtaat |
13874401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 12 - 70
Target Start/End: Complemental strand, 13876969 - 13876911
Alignment:
| Q |
12 |
tattctttagaagattttatcgtgtatgtgtacatgggtggcattaaaaatgttcgttt |
70 |
Q |
| |
|
|||||||||||||||||||| |||||||| |||||||||||||| ||||| |||||||| |
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|
| T |
13876969 |
tattctttagaagattttattgtgtatgtatacatgggtggcatgaaaaaggttcgttt |
13876911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 333 - 420
Target Start/End: Original strand, 14397150 - 14397237
Alignment:
| Q |
333 |
aactgttttatggaactatcaagtgatcacctcacttgttaagttctttgtaattgtctttctccggcattcctacgagtaatgtact |
420 |
Q |
| |
|
||||||||||||| ||||||||||| || |||||||| | |||||||||||||| || |||| ||||||| | | |||||||||||| |
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| T |
14397150 |
aactgttttatgggactatcaagtgttcccctcacttttaaagttctttgtaatcgtgtttcaccggcatcacaatgagtaatgtact |
14397237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 420 - 470
Target Start/End: Complemental strand, 16025007 - 16024957
Alignment:
| Q |
420 |
tgctgaatgtttgtttctttatcatggtttagagtggtgattctgcaagac |
470 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| ||||||||||||| |||| |
|
|
| T |
16025007 |
tgctgaatgtttttttctttatcatggtttagggtggtgattctgctagac |
16024957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 422 - 470
Target Start/End: Original strand, 40165746 - 40165794
Alignment:
| Q |
422 |
ctgaatgtttgtttctttatcatggtttagagtggtgattctgcaagac |
470 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||| |||| |
|
|
| T |
40165746 |
ctgaatgtttgtttctttatcatggtttaggctggtgattctgctagac |
40165794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 417 - 469
Target Start/End: Original strand, 14392729 - 14392781
Alignment:
| Q |
417 |
tactgctgaatgtttgtttctttatcatggtttagagtggtgattctgcaaga |
469 |
Q |
| |
|
||||||| ||||||||| || ||||||||||||| |||| ||||||||||||| |
|
|
| T |
14392729 |
tactgctaaatgtttgtgtcattatcatggtttaaagtgttgattctgcaaga |
14392781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 200 - 289
Target Start/End: Complemental strand, 13874605 - 13874513
Alignment:
| Q |
200 |
atcaatggcctcatttcc-ttgttaattgtgtttatagg---aagtgatcactacacttgttgaagttcttggtaattgtctgtcattctgttg |
289 |
Q |
| |
|
|||||||||||||||| | ||||||||||||||||| || |||||||| | ||||||| ||||||||||||||||| || ||||||| ||| |
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|
| T |
13874605 |
atcaatggcctcattttcgttgttaattgtgtttatgggactaagtgatcgccacacttg-tgaagttcttggtaattctcattcattctattg |
13874513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 337 - 383
Target Start/End: Original strand, 14392607 - 14392653
Alignment:
| Q |
337 |
gttttatggaactatcaagtgatcacctcacttgttaagttctttgt |
383 |
Q |
| |
|
||||||||| |||||||||||||| |||||||||| |||||| |||| |
|
|
| T |
14392607 |
gttttatgggactatcaagtgatcccctcacttgtaaagttcattgt |
14392653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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