View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16608_high_2 (Length: 790)

Name: NF16608_high_2
Description: NF16608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16608_high_2
NF16608_high_2
[»] chr7 (10 HSPs)
chr7 (16-781)||(7725841-7726604)
chr7 (197-381)||(7736377-7736561)
chr7 (445-691)||(7738466-7738717)
chr7 (688-773)||(7739015-7739100)
chr7 (71-197)||(45670536-45670662)
chr7 (79-176)||(32456501-32456597)
chr7 (74-176)||(47923295-47923397)
chr7 (695-767)||(1094903-1094975)
chr7 (586-690)||(7736741-7736853)
chr7 (97-176)||(23055418-23055497)
[»] scaffold0158 (1 HSPs)
scaffold0158 (16-198)||(26901-27083)
[»] chr8 (4 HSPs)
chr8 (16-197)||(9416828-9417008)
chr8 (74-192)||(26658559-26658677)
chr8 (97-176)||(30906219-30906298)
chr8 (71-169)||(28597509-28597607)
[»] chr5 (7 HSPs)
chr5 (28-197)||(14602956-14603122)
chr5 (69-175)||(2960348-2960454)
chr5 (69-175)||(2968817-2968923)
chr5 (68-193)||(23922559-23922684)
chr5 (77-176)||(38160796-38160895)
chr5 (695-757)||(9891935-9891997)
chr5 (97-176)||(31765321-31765400)
[»] chr6 (6 HSPs)
chr6 (36-176)||(5493385-5493525)
chr6 (14-193)||(32332076-32332260)
chr6 (68-175)||(2452567-2452674)
chr6 (69-123)||(28500736-28500790)
chr6 (69-123)||(29813147-29813201)
chr6 (77-111)||(17720414-17720448)
[»] chr2 (7 HSPs)
chr2 (68-170)||(31654660-31654762)
chr2 (74-176)||(32617550-32617652)
chr2 (74-191)||(11547299-11547414)
chr2 (74-176)||(28917214-28917316)
chr2 (74-173)||(41325433-41325532)
chr2 (134-192)||(6423810-6423868)
chr2 (70-111)||(34833080-34833121)
[»] chr4 (10 HSPs)
chr4 (31-191)||(21393835-21393997)
chr4 (31-126)||(39216985-39217080)
chr4 (72-193)||(26442589-26442710)
chr4 (112-193)||(31146849-31146930)
chr4 (68-176)||(46216274-46216382)
chr4 (71-191)||(55261572-55261692)
chr4 (78-176)||(37339111-37339209)
chr4 (71-160)||(34104920-34105009)
chr4 (74-111)||(48498571-48498608)
chr4 (77-182)||(50416300-50416405)
[»] chr1 (6 HSPs)
chr1 (74-182)||(22093682-22093790)
chr1 (74-193)||(52470610-52470729)
chr1 (76-190)||(39187486-39187599)
chr1 (71-176)||(6092936-6093040)
chr1 (102-176)||(4422268-4422342)
chr1 (70-111)||(22565641-22565682)
[»] scaffold0027 (1 HSPs)
scaffold0027 (21-96)||(29049-29124)
[»] chr3 (4 HSPs)
chr3 (74-191)||(30793597-30793714)
chr3 (49-108)||(52958158-52958217)
chr3 (74-191)||(25725846-25725963)
chr3 (70-111)||(55366194-55366235)


Alignment Details
Target: chr7 (Bit Score: 707; Significance: 0; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 707; E-Value: 0
Query Start/End: Original strand, 16 - 781
Target Start/End: Original strand, 7725841 - 7726604
Alignment:
Q  16 caaaaaggaccctcaaaaatacagagttgctgtcaaacaattacacaaacaggcagtcagccgatacccaaacaagttaacgggtccgaccaccattgct 115  Q
    |||| ||||| ||||||||||  |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  7725841 caaagaggacgctcaaaaata--gagttgctgtcaaacaattacacaaacaggtagtcagccgatacccaaacaagttaacgggtccgaccaccattgct 7725938  T
Q  116 gacaaccaaaaaccaaatcggcattattagccttcaaccaccaatatgaatgaaatttaacgttttcaataagctccacattatattggaaatgcaactt 215  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  7725939 gacaaccaaaaaccaaatcagcattattagccttcaaccaccaatatgaatgaaatttaaccttttcaataagctccacattatattggaaatgcaactt 7726038  T
Q  216 atagagtaaatccaacatgaatcatgtaattctatctcaaacggtaaagtgagtttcctgaacaaattcagcaacctaaattcaattttgcaaaaactta 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7726039 atagagtaaatccaacatgaatcatgtaattctatctcaaacggtaaagtgagtttcctgaacaaattcagcaacctaaattcaattttgcaaaaactta 7726138  T
Q  316 atagagaaattggaacaaaaaattaccaaaaaagcatgcaacctcatcgatgaaattacaagaaacacgcagtatttatattaagcagaaactagagtaa 415  Q
    || |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  7726139 attgagaaattggaaaaaaaaattaccaaaaaagcatgcaacctcatcgatgaaattacaagaaacacgccgtatttatattaagcagaaactagagtaa 7726238  T
Q  416 agatgtggggtcaatatccccaccccatgaccaaattaactcttagaaatggataattgcactcttgtttatcttctgcacaaagagaaggtctcaataa 515  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7726239 agatgtggggtcaatatccccaccccatgaccaaattaactcttagaaatggataattgcactcttgtttatcttctgcacaaagagaaggtctcaataa 7726338  T
Q  516 ccacatccaaactaagaaaaattgaacttgtgcagaaacttatttcatagaggctacactaagggatgatattaaacttcaccatactctacttcaactc 615  Q
     || ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  7726339 tcagatcaaaactaagaaaaattgaacttgtgcagaaacttatttcatagaggctacactaagggatgaaattaaacttcaccatactctacttcaactc 7726438  T
Q  616 ccttgaacatagtctattaattgtgattcaattaaaacaacaaattattttgtgttgcaaacacattaatcattgcccgaatttaaacttcgcactaatc 715  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7726439 ccttgaacatagtctattaattgtgattcaattaaaacaacaaattattttgtgttgcaaacacattaatcattgcccgaatttaaacttcgcactaatc 7726538  T
Q  716 caaaggtctctaatcgagtaaagtctcaagtcgccaaaacatcatcagaatttattcaatattctt 781  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7726539 caaaggtctctaatcgagtaaagtctcaagtcgccaaaacatcatcagaatttattcaatattctt 7726604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 98; E-Value: 7e-48
Query Start/End: Original strand, 197 - 381
Target Start/End: Original strand, 7736377 - 7736561
Alignment:
Q  197 tatattggaaatgcaacttatagagtaaatccaacatgaatcatgtaattctatctcaaacggtaaagtgagtttcctgaacaaattcagcaacctaaat 296  Q
    |||||||||||||  ||||||||||||||||||||  ||||||| | ||| | |||||||||||||||| |||||||||| ||||||||| |||||||||    
T  7736377 tatattggaaatgtgacttatagagtaaatccaaccggaatcatatgattatttctcaaacggtaaagtaagtttcctgatcaaattcagtaacctaaat 7736476  T
Q  297 tcaattt-tgcaaaaacttaatagagaaattggaacaaaaaattaccaaaaaagcatgcaacctcatcgatgaaattacaagaaac 381  Q
    ||||||| |||||| || |||||||||||||||||  |||||||||||||||| ||| ||| |||||| |||||||||||||||||    
T  7736477 tcaatttgtgcaaacacgtaatagagaaattggaaacaaaaattaccaaaaaa-catacaatctcatcaatgaaattacaagaaac 7736561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 445 - 691
Target Start/End: Original strand, 7738466 - 7738717
Alignment:
Q  445 accaaattaactcttagaaatggataattgcactcttgtttatcttctgcacaaagagaaggtctcaataaccacatccaaactaagaaaaattgaactt 544  Q
    ||||||||||| |||||||   ||||| | || |||||||||| || |||||| ||| |  |||||||||||||||||||||  || ||||  |||||||    
T  7738466 accaaattaacacttagaagctgataactacattcttgtttatattttgcacagagata--gtctcaataaccacatccaaaggaacaaaatctgaactt 7738563  T
Q  545 gtgcagaaacttatttcatagaggctacactaagggatgatattaaacttcaccatactctacttcaactcccttgaacatagtc-------tattaatt 637  Q
    | ||||||||||| | |||||||| ||||||||||  ||| |||||||||||| |||||||||| |||||||| | |||||||||       |||||| |    
T  7738564 gcgcagaaacttaatgcatagaggttacactaaggcctgaaattaaacttcactatactctactccaactccccttaacatagtctattaagtattaact 7738663  T
Q  638 gtgattcaattaaaacaacaaattattttgtgttgcaaacacattaatcattgc 691  Q
    |||| |||||||| ||||| |||||||||  |||||||||||| ||||||||||    
T  7738664 gtgactcaattaagacaactaattattttacgttgcaaacacaataatcattgc 7738717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 688 - 773
Target Start/End: Original strand, 7739015 - 7739100
Alignment:
Q  688 ttgcccgaatttaaacttcgcactaatccaaaggtctctaatcgagtaaagtctcaagtcgccaaaacatcatcagaatttattca 773  Q
    |||||| |||||||||||||||||| |||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||    
T  7739015 ttgcccaaatttaaacttcgcactagtccaaaggtctctaatcgagcaaagtctcaagtcgcaaaaacatcatcagaatttattca 7739100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 71 - 197
Target Start/End: Original strand, 45670536 - 45670662
Alignment:
Q  71 gtcagccgatacccaaacaagttaacgggtccgaccaccattgctgacaaccaaaaaccaaatcggcattattagccttcaaccaccaatatgaatgaaa 170  Q
    ||||||||||||||||||||  |||||||| ||||| ||| ||||||||||| ||||| |||   |||||||| ||||| |||||||  |||||||||||    
T  45670536 gtcagccgatacccaaacaaactaacgggttcgaccgccactgctgacaaccgaaaacaaaagttgcattatttgcctttaaccaccggtatgaatgaaa 45670635  T
Q  171 tttaacgttttcaataagctccacatt 197  Q
    ||| || ||||||||||||||||||||    
T  45670636 tttgaccttttcaataagctccacatt 45670662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 79 - 176
Target Start/End: Complemental strand, 32456597 - 32456501
Alignment:
Q  79 atacccaaacaagttaacgggtccgaccaccattgctgacaaccaaaaaccaaatcggcattattagccttcaaccaccaatatgaatgaaatttaac 176  Q
    |||| ||||||||||||||||| | |||||||  |||||||||||||||| ||| ||||||||||||||||||||||||| ||||||||||| |||||    
T  32456597 atacacaaacaagttaacgggtgcaaccaccaccgctgacaaccaaaaacaaaa-cggcattattagccttcaaccaccagtatgaatgaaacttaac 32456501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 74 - 176
Target Start/End: Original strand, 47923295 - 47923397
Alignment:
Q  74 agccgatacccaaacaagttaacgggtccgaccaccattgctgacaaccaaaaaccaaatcggcattattagccttcaaccaccaatatgaatgaaattt 173  Q
    |||||||||||| ||| || || |||| ||||||||  |||||||| |||||||| |||  ||||||||||||| |||||||||  || |||||||||||    
T  47923295 agccgatacccagacatgtcaaggggttcgaccaccgctgctgacacccaaaaacaaaagaggcattattagccctcaaccacccgtaggaatgaaattt 47923394  T
Q  174 aac 176  Q
    |||    
T  47923395 aac 47923397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 695 - 767
Target Start/End: Complemental strand, 1094975 - 1094903
Alignment:
Q  695 aatttaaacttcgcactaatccaaaggtctctaatcgagtaaagtctcaagtcgccaaaacatcatcagaatt 767  Q
    |||||| ||||| ||||| ||| |||||| ||||||| | |||||||||||||||||||||||||||| ||||    
T  1094975 aatttacacttctcactagtcctaaggtcgctaatcgtgaaaagtctcaagtcgccaaaacatcatcaaaatt 1094903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 586 - 690
Target Start/End: Original strand, 7736741 - 7736853
Alignment:
Q  586 attaaacttcaccatactctacttcaactcccttgaacatagtctattaatt--------gtgattcaattaaaacaacaaattattttgtgttgcaaac 677  Q
    ||||||||||||  |||||||||  ||||||| ||||||||||||||||| |        |||| |||||||| |||||||||||||||  |||||||||    
T  7736741 attaaacttcactgtactctactctaactcccctgaacatagtctattaagtatttaactgtgactcaattaagacaacaaattattttacgttgcaaac 7736840  T
Q  678 acattaatcattg 690  Q
    ||| |||||||||    
T  7736841 acaataatcattg 7736853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 97 - 176
Target Start/End: Complemental strand, 23055497 - 23055418
Alignment:
Q  97 gggtccgaccaccattgctgacaaccaaaaaccaaatcggcattattagccttcaaccaccaatatgaatgaaatttaac 176  Q
    |||| ||||||||| |||||||| |||||||| |||  ||||||||||||| |||||||||| || |||||||| |||||    
T  23055497 gggttcgaccaccactgctgacacccaaaaacaaaagaggcattattagccctcaaccaccagtaggaatgaaagttaac 23055418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0158 (Bit Score: 115; Significance: 5e-58; HSPs: 1)
Name: scaffold0158
Description:

Target: scaffold0158; HSP #1
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 16 - 198
Target Start/End: Original strand, 26901 - 27083
Alignment:
Q  16 caaaaaggaccctcaaaaatacagagttgctgtcaaacaattacacaaacaggcagtcagccgatacccaaacaagttaacgggtccgaccaccattgct 115  Q
    |||| ||||| |||||||||||| |||| |||| ||||||||||||||||  ||||||||||||||||||||||||||||||||| ||||||||| | ||    
T  26901 caaagaggacgctcaaaaatacaaagtttctgttaaacaattacacaaactagcagtcagccgatacccaaacaagttaacgggtacgaccaccactcct 27000  T
Q  116 gacaaccaaaaaccaaatcggcattattagccttcaaccaccaatatgaatgaaatttaacgttttcaataagctccacatta 198  Q
    || ||||| |||| ||| ||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||    
T  27001 gagaaccataaacaaaagcggcattattagccttcaaccaccagtatgaatgaaacttaaccttttcaataagctccacatta 27083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 94; Significance: 2e-45; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 16 - 197
Target Start/End: Original strand, 9416828 - 9417008
Alignment:
Q  16 caaaaaggaccctcaaaaatacagagttgctgtcaaacaattacacaaacaggcagtcagccgatacccaaacaagttaacgggtccgaccaccattgct 115  Q
    |||| ||||| ||||||||||||||||| ||| |||  |||||| |||||  ||||||||||||||||||||||||||||| ||||| ||||  ||||||    
T  9416828 caaataggacgctcaaaaatacagagttcctgacaat-aattacgcaaactagcagtcagccgatacccaaacaagttaacaggtccaaccataattgct 9416926  T
Q  116 gacaaccaaaaaccaaatcggcattattagccttcaaccaccaatatgaatgaaatttaacgttttcaataagctccacatt 197  Q
    || ||||| |||| ||| ||||||||||||||||||||||||| ||||||||||| ||||| |||||| |||||||||||||    
T  9416927 gagaaccataaacaaaagcggcattattagccttcaaccaccagtatgaatgaaacttaaccttttcagtaagctccacatt 9417008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 74 - 192
Target Start/End: Original strand, 26658559 - 26658677
Alignment:
Q  74 agccgatacccaaacaagttaacgggtccgaccaccattgctgacaaccaaaaaccaaatcggcattattagccttcaaccaccaatatgaatgaaattt 173  Q
    ||||||||||||||||||  |||| |||||||||||| |||||||||||| | || |||  | ||||||||||  |||||||||| ||| ||||||||||    
T  26658559 agccgatacccaaacaagacaacgagtccgaccaccactgctgacaaccatatactaaagtgacattattagctctcaaccaccagtataaatgaaattt 26658658  T
Q  174 aacgttttcaataagctcc 192  Q
     || ||||| |||||||||    
T  26658659 taccttttccataagctcc 26658677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 97 - 176
Target Start/End: Original strand, 30906219 - 30906298
Alignment:
Q  97 gggtccgaccaccattgctgacaaccaaaaaccaaatcggcattattagccttcaaccaccaatatgaatgaaatttaac 176  Q
    ||||| |||| ||| ||||||||||||||||| ||  ||||||||||||| | |||||||||||| || || ||||||||    
T  30906219 gggtctgaccgccactgctgacaaccaaaaacaaatgcggcattattagcatgcaaccaccaataggagtggaatttaac 30906298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 71 - 169
Target Start/End: Complemental strand, 28597607 - 28597509
Alignment:
Q  71 gtcagccgatacccaaacaagttaacgggtccgaccaccattgctgacaaccaaaaaccaaatcggcattattagccttcaaccaccaatatgaatgaa 169  Q
    ||||||||||||||||||||   || ||||| |||| ||| |||| ||| ||| |||| |||  ||||||||| ||||| ||||||||||| |||||||    
T  28597607 gtcagccgatacccaaacaaaagaaagggtcggaccgccactgctcacagccataaacaaaagaggcattatttgcctttaaccaccaataggaatgaa 28597509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 88; Significance: 7e-42; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 88; E-Value: 7e-42
Query Start/End: Original strand, 28 - 197
Target Start/End: Complemental strand, 14603122 - 14602956
Alignment:
Q  28 tcaaaaatacagagttgctgtcaaacaattacacaaacaggcagtcagccgatacccaaacaagttaacgggtccgaccaccattgctgacaaccaaaaa 127  Q
    ||||||||||| ||||  ||||||||||||||||||||  | ||||||   |||||||||||| |||||||||| |||||||| |||||| ||| | |||    
T  14603122 tcaaaaatacaaagttcatgtcaaacaattacacaaacgagtagtcag---atacccaaacaaattaacgggtctgaccaccactgctgagaacgataaa 14603026  T
Q  128 ccaaatcggcattattagccttcaaccaccaatatgaatgaaatttaacgttttcaataagctccacatt 197  Q
    | ||| |||||||||||||||||||||||| |||||||||||| ||||| ||||||||||||||||||||    
T  14603025 caaaagcggcattattagccttcaaccaccgatatgaatgaaacttaaccttttcaataagctccacatt 14602956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 69 - 175
Target Start/End: Complemental strand, 2960454 - 2960348
Alignment:
Q  69 cagtcagccgatacccaaacaagttaacgggtccgaccaccattgctgacaaccaaaaaccaaatcggcattattagccttcaaccaccaatatgaatga 168  Q
    ||||||||||||||||||||||| ||| |||||||||||||| | ||||||||||||||| |||   || |||||||||||||||||| | ||| |||||    
T  2960454 cagtcagccgatacccaaacaagataaagggtccgaccaccactactgacaaccaaaaacaaaagtagcgttattagccttcaaccactagtattaatga 2960355  T
Q  169 aatttaa 175  Q
    |||||||    
T  2960354 aatttaa 2960348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 69 - 175
Target Start/End: Complemental strand, 2968923 - 2968817
Alignment:
Q  69 cagtcagccgatacccaaacaagttaacgggtccgaccaccattgctgacaaccaaaaaccaaatcggcattattagccttcaaccaccaatatgaatga 168  Q
    ||||||||||||||||||||||| ||| |||||||||||||| | ||||||||||||||| |||   || |||||||||||||||||| | ||| |||||    
T  2968923 cagtcagccgatacccaaacaagataaagggtccgaccaccactactgacaaccaaaaacaaaagtagcgttattagccttcaaccactagtattaatga 2968824  T
Q  169 aatttaa 175  Q
    |||||||    
T  2968823 aatttaa 2968817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 68 - 193
Target Start/End: Original strand, 23922559 - 23922684
Alignment:
Q  68 gcagtcagccgatacccaaacaagttaacgggtccgaccaccattgctgacaaccaaaaaccaaatcggcattattagccttcaaccaccaatatgaatg 167  Q
    ||||| ||||||||||||||||||| || |||| ||||||||| | | ||||||||  ||| |||  ||||||||||||| | |||||||  || |||||    
T  23922559 gcagttagccgatacccaaacaagtcaaagggttcgaccaccactaccgacaaccatgaacaaaaatggcattattagcccttaaccaccggtaggaatg 23922658  T
Q  168 aaatttaacgttttcaataagctcca 193  Q
    ||||||||| || || ||||| ||||    
T  23922659 aaatttaaccttctccataagttcca 23922684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 77 - 176
Target Start/End: Original strand, 38160796 - 38160895
Alignment:
Q  77 cgatacccaaacaagttaacgggtccgaccaccattgctgacaaccaaaaaccaaatcggcattattagccttcaaccaccaatatgaatgaaatttaac 176  Q
    ||||||||||||||  |||||||| ||| | ||| || ||||||||| | || ||| |||||||||||||   ||||||||||||||| || ||||||||    
T  38160796 cgatacccaaacaaagtaacgggttcgatctccactgttgacaaccatatacaaaagcggcattattagcacgcaaccaccaatatgagtgcaatttaac 38160895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 695 - 757
Target Start/End: Original strand, 9891935 - 9891997
Alignment:
Q  695 aatttaaacttcgcactaatccaaaggtctctaatcgagtaaagtctcaagtcgccaaaacat 757  Q
    |||||| ||||| ||||| ||| || ||||||||||| | |||||||||||||||||||||||    
T  9891935 aatttacacttctcactagtcctaacgtctctaatcgtgaaaagtctcaagtcgccaaaacat 9891997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 176
Target Start/End: Original strand, 31765321 - 31765400
Alignment:
Q  97 gggtccgaccaccattgctgacaaccaaaaaccaaatcggcattattagccttcaaccaccaatatgaatgaaatttaac 176  Q
    ||||| |||| ||| ||||||||||||||||  ||| |||||||||||||   |||||||||||| || || ||||||||    
T  31765321 gggtctgaccgccactgctgacaaccaaaaataaaagcggcattattagcacgcaaccaccaataggagtggaatttaac 31765400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 69; Significance: 2e-30; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 36 - 176
Target Start/End: Complemental strand, 5493525 - 5493385
Alignment:
Q  36 acagagttgctgtcaaacaattacacaaacaggcagtcagccgatacccaaacaagttaacgggtccgaccaccattgctgacaaccaaaaaccaaatcg 135  Q
    |||||||| | |||||| |||||||||| |  | |||||||||||||||||| || ||||| |||||||||||||||||||| | ||| |||| ||| ||    
T  5493525 acagagttccagtcaaataattacacaatctcgtagtcagccgatacccaaataaattaacaggtccgaccaccattgctgagagccataaacaaaaacg 5493426  T
Q  136 gcattattagccttcaaccaccaatatgaatgaaatttaac 176  Q
    |||| |||||||||||||||||||||| ||||||| |||||    
T  5493425 gcataattagccttcaaccaccaatataaatgaaacttaac 5493385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 14 - 193
Target Start/End: Original strand, 32332076 - 32332260
Alignment:
Q  14 atcaaaaaggaccctcaaaaatacagagttgctgtcaaacaattacacaaacaggcagtcagccgatacccaaacaagttaacgggtccgaccaccattg 113  Q
    |||||| ||||| ||||||| ||||||||   ||| |||||||||||||| || | ||| ||| |||| ||||||| |||||||||||  ||||||  ||    
T  32332076 atcaaagaggacgctcaaaa-tacagagtatatgttaaacaattacacaatcaagtagttagctgatatccaaacatgttaacgggtctaaccacctctg 32332174  T
Q  114 ctgacaaccaaaaaccaaatcggcattattagccttcaaccac------caatatgaatgaaatttaacgttttcaataagctcca 193  Q
    ||||||||||||||  |||  ||||||||||||||| ||||||      |||||||||||||||||||| || || ||||||||||    
T  32332175 ctgacaaccaaaaataaaagtggcattattagcctttaaccaccaatatcaatatgaatgaaatttaaccttatccataagctcca 32332260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 68 - 175
Target Start/End: Original strand, 2452567 - 2452674
Alignment:
Q  68 gcagtcagccgatacccaaacaagttaacgggtccgaccaccattgctgacaaccaaaaaccaaatcggcattattagccttcaaccaccaatatgaatg 167  Q
    ||||||||||||||||||||||||| || |||| ||||||||| |  ||| || ||  ||| |||  | ||||||||||| | ||||||||||| |||||    
T  2452567 gcagtcagccgatacccaaacaagtcaaagggttcgaccaccactattgataatcatgaacaaaaatgacattattagcccttaaccaccaataggaatg 2452666  T
Q  168 aaatttaa 175  Q
    ||||||||    
T  2452667 aaatttaa 2452674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 69 - 123
Target Start/End: Original strand, 28500736 - 28500790
Alignment:
Q  69 cagtcagccgatacccaaacaagttaacgggtccgaccaccattgctgacaacca 123  Q
    |||| ||||||||||||||||||  ||||||| | ||||||||||||||||||||    
T  28500736 cagttagccgatacccaaacaagacaacgggttcaaccaccattgctgacaacca 28500790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 69 - 123
Target Start/End: Original strand, 29813147 - 29813201
Alignment:
Q  69 cagtcagccgatacccaaacaagttaacgggtccgaccaccattgctgacaacca 123  Q
    |||| ||||||||||||||||||  ||||||| | ||||||||||||||||||||    
T  29813147 cagttagccgatacccaaacaagacaacgggttcaaccaccattgctgacaacca 29813201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 77 - 111
Target Start/End: Original strand, 17720414 - 17720448
Alignment:
Q  77 cgatacccaaacaagttaacgggtccgaccaccat 111  Q
    |||||||||||||| ||||||||||||||||||||    
T  17720414 cgatacccaaacaaattaacgggtccgaccaccat 17720448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 63; Significance: 6e-27; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 68 - 170
Target Start/End: Original strand, 31654660 - 31654762
Alignment:
Q  68 gcagtcagccgatacccaaacaagttaacgggtccgaccaccattgctgacaaccaaaaaccaaatcggcattattagccttcaaccaccaatatgaatg 167  Q
    |||||||||||||||||||| |||||||||| |||||||||||  ||||||||| |||||| ||| | |||| |||||||||||||||||| ||||||||    
T  31654660 gcagtcagccgatacccaaataagttaacggatccgaccaccaccgctgacaacgaaaaacaaaagcagcatcattagccttcaaccaccattatgaatg 31654759  T
Q  168 aaa 170  Q
    |||    
T  31654760 aaa 31654762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 74 - 176
Target Start/End: Original strand, 32617550 - 32617652
Alignment:
Q  74 agccgatacccaaacaagttaacgggtccgaccaccattgctgacaaccaaaaaccaaatcggcattattagccttcaaccaccaatatgaatgaaattt 173  Q
    |||||||||||| ||| || || |||| ||||||||| ||||||||||||||||| ||| ||||||||||||||| ||||||||| || |||||||||||    
T  32617550 agccgatacccagacatgtcaatgggttcgaccaccactgctgacaaccaaaaacaaaagcggcattattagcctgcaaccaccagtaggaatgaaattt 32617649  T
Q  174 aac 176  Q
    |||    
T  32617650 aac 32617652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 74 - 191
Target Start/End: Complemental strand, 11547414 - 11547299
Alignment:
Q  74 agccgatacccaaacaagttaacgggtccgaccaccattgctgacaaccaaaaaccaaatcggcattattagccttcaaccaccaatatgaatgaaattt 173  Q
    ||||||||||||||||||  ||||| |||||||||||||||||||    | | || |||  ||| |||||||||||||||||||||||||||||||||||    
T  11547414 agccgatacccaaacaagacaacggatccgaccaccattgctgactt--atatacaaaagtggctttattagccttcaaccaccaatatgaatgaaattt 11547317  T
Q  174 aacgttttcaataagctc 191  Q
    ||| || || ||||||||    
T  11547316 aactttatccataagctc 11547299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 74 - 176
Target Start/End: Complemental strand, 28917316 - 28917214
Alignment:
Q  74 agccgatacccaaacaagttaacgggtccgaccaccattgctgacaaccaaaaaccaaatcggcattattagccttcaaccaccaatatgaatgaaattt 173  Q
    |||||||||||| ||| || || |||| |||||| || ||| ||||||||||||| |||  |||||||||| |||||||||||||||| |||||||||||    
T  28917316 agccgatacccagacatgtcaaggggttcgaccatcactgcggacaaccaaaaacaaaagaggcattattaaccttcaaccaccaataggaatgaaattt 28917217  T
Q  174 aac 176  Q
    |||    
T  28917216 aac 28917214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 74 - 173
Target Start/End: Complemental strand, 41325532 - 41325433
Alignment:
Q  74 agccgatacccaaacaagttaacgggtccgaccaccattgctgacaaccaaaaaccaaatcggcattattagccttcaaccaccaatatgaatgaaattt 173  Q
    |||||||||| |||||||  |||| |||||||||||| ||| |||||||| | || |||  || ||||||| || |||||||||||||| ||||||||||    
T  41325532 agccgatacctaaacaagacaacgagtccgaccaccactgccgacaaccatatactaaagtggtattattaaccctcaaccaccaatataaatgaaattt 41325433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 134 - 192
Target Start/End: Complemental strand, 6423868 - 6423810
Alignment:
Q  134 cggcattattagccttcaaccaccaatatgaatgaaatttaacgttttcaataagctcc 192  Q
    ||||||||||||||||||||||||| ||||||||||||||||  || || |||||||||    
T  6423868 cggcattattagccttcaaccaccagtatgaatgaaatttaatcttatctataagctcc 6423810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 111
Target Start/End: Complemental strand, 34833121 - 34833080
Alignment:
Q  70 agtcagccgatacccaaacaagttaacgggtccgaccaccat 111  Q
    |||||| ||||||||||||||  |||||||||||||||||||    
T  34833121 agtcagtcgatacccaaacaaagtaacgggtccgaccaccat 34833080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 2e-20; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 31 - 191
Target Start/End: Complemental strand, 21393997 - 21393835
Alignment:
Q  31 aaaatacagagttgctgtcaaacaattacacaaacaggcagtcagccgatacccaaacaagttaacgggtccgaccaccattgctgacaaccaaaaacca 130  Q
    ||||||||||||  |||||||| ||||||| ||||| || || ||||||||||||||||||   ||||||| |||||||| ||||  | |||| |||| |    
T  21393997 aaaatacagagtgtctgtcaaataattacaaaaacaagccgttagccgatacccaaacaagaccacgggtctgaccaccactgctaccgaccataaacaa 21393898  T
Q  131 aatcggcattattagccttcaacc--accaatatgaatgaaatttaacgttttcaataagctc 191  Q
    ||  |||||||||| || ||||||  |||| ||||||||||||||||| || || ||||||||    
T  21393897 aagtggcattattaaccctcaaccataccagtatgaatgaaatttaaccttatccataagctc 21393835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 31 - 126
Target Start/End: Complemental strand, 39217080 - 39216985
Alignment:
Q  31 aaaatacagagttgctgtcaaacaattacacaaacaggcagtcagccgatacccaaacaagttaacgggtccgaccaccattgctgacaaccaaaa 126  Q
    ||||||||||||| |||| || |||||||||||  | |||||||  |||||| ||||||||||||||||||||| || || |||||||||| ||||    
T  39217080 aaaatacagagtttctgttaagcaattacacaattaagcagtcactcgatacacaaacaagttaacgggtccgatcatcactgctgacaacaaaaa 39216985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 72 - 193
Target Start/End: Complemental strand, 26442710 - 26442589
Alignment:
Q  72 tcagccgatacccaaacaagttaacgggtccgaccaccattgctgacaaccaaaaaccaaatcggcattattagccttcaaccaccaatatgaatgaaat 171  Q
    |||||||||||||||||||   || |||||  ||| ||| |||| ||| ||| |||| |||  ||| ||||| ||||| ||||||||||| |||||||||    
T  26442710 tcagccgatacccaaacaaaacaatgggtcataccgccactgctcacagccataaacaaaagaggcgttatttgcctttaaccaccaataggaatgaaat 26442611  T
Q  172 ttaacgttttcaataagctcca 193  Q
    ||||| |||||  |||||||||    
T  26442610 ttaaccttttctgtaagctcca 26442589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 112 - 193
Target Start/End: Complemental strand, 31146930 - 31146849
Alignment:
Q  112 tgctgacaaccaaaaaccaaatcggcattattagccttcaaccaccaatatgaatgaaatttaacgttttcaataagctcca 193  Q
    ||||||||||||  ||| |||  ||||||||||||| | |||||||| ||||||||||||||||| || || ||||| ||||    
T  31146930 tgctgacaaccatgaacaaaagtggcattattagcccttaaccaccagtatgaatgaaatttaaccttctccataagttcca 31146849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 68 - 176
Target Start/End: Original strand, 46216274 - 46216382
Alignment:
Q  68 gcagtcagccgatacccaaacaagttaacgggtccgaccaccattgctgacaaccaaaaaccaaatcggcattattagccttcaaccaccaatatgaatg 167  Q
    ||||| || |||||||||||||| | || |||| ||||||||| |||| || ||||  ||| ||   ||||||||||||| | |||||||| || |||||    
T  46216274 gcagttagtcgatacccaaacaaatcaaagggttcgaccaccactgctaactaccatgaacaaatgtggcattattagcccttaaccaccagtaggaatg 46216373  T
Q  168 aaatttaac 176  Q
    |||||||||    
T  46216374 aaatttaac 46216382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 71 - 191
Target Start/End: Original strand, 55261572 - 55261692
Alignment:
Q  71 gtcagccgatacccaaacaagttaacgggtccgaccaccattgctgacaaccaaaaaccaaatcggcattattagccttcaaccaccaatatgaatgaaa 170  Q
    ||||| |||||||||  |||  |||||||||| ||||||||  |||| ||||| | || |||  ||| || ||||| |||| |||| |||| ||||| ||    
T  55261572 gtcagtcgatacccagtcaaagtaacgggtccaaccaccatctctgagaaccatacacaaaagtggctttgttagctttcagccacgaataagaatggaa 55261671  T
Q  171 tttaacgttttcaataagctc 191  Q
    |||||| ||||||||||||||    
T  55261672 tttaactttttcaataagctc 55261692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 78 - 176
Target Start/End: Original strand, 37339111 - 37339209
Alignment:
Q  78 gatacccaaacaagttaacgggtccgaccaccattgctgacaaccaaaaaccaaatcggcattattagccttcaaccaccaatatgaatgaaatttaac 176  Q
    ||||||||||| ||| |||||||  | || ||| | |||||||||| |||| |||  | ||||||||||| ||||||| |||||  |||||||||||||    
T  37339111 gatacccaaacgagtcaacgggttggtcctccactactgacaaccataaacaaaaatgacattattagccctcaaccatcaatagaaatgaaatttaac 37339209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 160
Target Start/End: Original strand, 34104920 - 34105009
Alignment:
Q  71 gtcagccgatacccaaacaagttaacgggtccgaccaccattgctgacaaccaaaaaccaaatcggcattattagccttcaaccaccaat 160  Q
    ||||| |||||||||||||    || |||||||||||||||  |||| ||||| | || |||  ||||||||| ||||||||||||||||    
T  34104920 gtcagtcgatacccaaacataacaaagggtccgaccaccatctctgagaaccatatacaaaacaggcattattcgccttcaaccaccaat 34105009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 111
Target Start/End: Complemental strand, 48498608 - 48498571
Alignment:
Q  74 agccgatacccaaacaagttaacgggtccgaccaccat 111  Q
    ||||||||||||| |||| |||||||||||||||||||    
T  48498608 agccgatacccaagcaagctaacgggtccgaccaccat 48498571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 182
Target Start/End: Complemental strand, 50416405 - 50416300
Alignment:
Q  77 cgatacccaaacaagttaacgggtccgaccaccattgctgacaaccaaaaaccaaatcggcattattagccttcaaccaccaatatgaatgaaatttaac 176  Q
    ||||||||||||||   ||||||| ||||| ||| |||||||||||| | || ||  |||||||||||||   |||||||||||| || || || |||||    
T  50416405 cgatacccaaacaaagcaacgggttcgaccgccactgctgacaaccatacacaaatgcggcattattagcacgcaaccaccaataagagtggaacttaac 50416306  T
Q  177 gttttc 182  Q
     |||||    
T  50416305 cttttc 50416300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 1e-18; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 74 - 182
Target Start/End: Complemental strand, 22093790 - 22093682
Alignment:
Q  74 agccgatacccaaacaagttaacgggtccgaccaccattgctgacaaccaaaaaccaaatcggcattattagccttcaaccaccaatatgaatgaaattt 173  Q
    |||||||||||||||||| ||| || ||||||| ||| || ||||||||| |||| |||  | ||||||||||| ||||||||||||| |||||||||||    
T  22093790 agccgatacccaaacaagctaagggatccgaccgccactgttgacaaccataaacaaaagtgacattattagccctcaaccaccaataagaatgaaattt 22093691  T
Q  174 aacgttttc 182  Q
     || |||||    
T  22093690 taccttttc 22093682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 74 - 193
Target Start/End: Complemental strand, 52470729 - 52470610
Alignment:
Q  74 agccgatacccaaacaagttaacgggtccgaccaccattgctgacaaccaaaaaccaaatcggcattattagccttcaaccaccaatatgaatgaaattt 173  Q
    |||||||||||||| ||||||| || | ||||| ||| ||||||||||||||||| ||   ||||||| ||||| ||||||||||||| ||||| |||||    
T  52470729 agccgatacccaaataagttaagggattcgaccgccactgctgacaaccaaaaacaaacgtggcattactagccatcaaccaccaataagaatggaattt 52470630  T
Q  174 aacgttttcaataagctcca 193  Q
     || ||||||| ||| ||||    
T  52470629 taccttttcaacaagatcca 52470610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 76 - 190
Target Start/End: Complemental strand, 39187599 - 39187486
Alignment:
Q  76 ccgatacccaaacaagttaacgggtccgaccaccattgctgacaaccaaaaaccaaatcggcattattagccttcaaccaccaatatgaatgaaatttaa 175  Q
    |||||||||| ||||   ||||| ||||||||||||||| |||||||| | || || | | |||||||| ||||||||||||| || |||||||||||||    
T  39187599 ccgatacccatacaaaacaacggatccgaccaccattgccgacaaccatacacaaagt-gacattattatccttcaaccaccagtaagaatgaaatttaa 39187501  T
Q  176 cgttttcaataagct 190  Q
    | || || |||||||    
T  39187500 ctttatccataagct 39187486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 71 - 176
Target Start/End: Complemental strand, 6093040 - 6092936
Alignment:
Q  71 gtcagccgatacccaaacaagttaacgggtccgaccaccattgctgacaaccaaaaaccaaatcggcattattagccttcaaccaccaatatgaatgaaa 170  Q
    ||||| |||||||||||||    ||||| ||||||||||||  ||||||| |||| || |||  | |||||||||| |||||||||||||||||||||||    
T  6093040 gtcagtcgatacccaaacattacaacggatccgaccaccatctctgacaatcaaacacaaaagtgacattattagc-ttcaaccaccaatatgaatgaaa 6092942  T
Q  171 tttaac 176  Q
     |||||    
T  6092941 cttaac 6092936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 102 - 176
Target Start/End: Original strand, 4422268 - 4422342
Alignment:
Q  102 cgaccaccattgctgacaaccaaaaaccaaatcggcattattagccttcaaccaccaatatgaatgaaatttaac 176  Q
    ||||||||| ||||||||| ||||||  |||  |||||||||| ||  ||||||||| || ||||||||||||||    
T  4422268 cgaccaccactgctgacaatcaaaaataaaagtggcattattaacccgcaaccaccactaggaatgaaatttaac 4422342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 111
Target Start/End: Original strand, 22565641 - 22565682
Alignment:
Q  70 agtcagccgatacccaaacaagttaacgggtccgaccaccat 111  Q
    |||||||||||||||||||||  ||||||||| |||||||||    
T  22565641 agtcagccgatacccaaacaaagtaacgggtctgaccaccat 22565682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 21 - 96
Target Start/End: Original strand, 29049 - 29124
Alignment:
Q  21 aggaccctcaaaaatacagagttgctgtcaaacaattacacaaacaggcagtcagccgatacccaaacaagttaac 96  Q
    ||||| || |||||||| | ||| || ||||||||||||||||||||||| |||||||||| ||||||||||||||    
T  29049 aggacgctaaaaaatacggggttcctatcaaacaattacacaaacaggcaatcagccgatatccaaacaagttaac 29124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.000000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 74 - 191
Target Start/End: Complemental strand, 30793714 - 30793597
Alignment:
Q  74 agccgatacccaaacaagttaacgggtccgaccaccattgctgacaaccaaaaaccaaatcggcattattagccttcaaccaccaatatgaatgaaattt 173  Q
    ||||||||||||||||  | || || |||||||||||| |||||| |||||| || |||   |  ||||| ||||||| ||||||||| |||| ||||||    
T  30793714 agccgatacccaaacatctcaaaggctccgaccaccatcgctgactaccaaatacaaaagaagtgttatttgccttcagccaccaataagaataaaattt 30793615  T
Q  174 aacgttttcaataagctc 191  Q
    ||| || || ||||||||    
T  30793614 aactttatctataagctc 30793597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 108
Target Start/End: Complemental strand, 52958217 - 52958158
Alignment:
Q  49 caaacaattacacaaacaggcagtcagccgatacccaaacaagttaacgggtccgaccac 108  Q
    ||||||| |||| | | |||| ||||||||||| |||||||| |||||||||||||||||    
T  52958217 caaacaaatacaaagataggcggtcagccgatatccaaacaaattaacgggtccgaccac 52958158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 191
Target Start/End: Complemental strand, 25725963 - 25725846
Alignment:
Q  74 agccgatacccaaacaagttaacgggtccgaccaccattgctgacaaccaaaaaccaaatcggcattattagccttcaaccaccaatatgaatgaaattt 173  Q
    |||||||||||| |||  |||| ||||  |||||||||  ||||| ||||||||| |||  ||   ||| |||||||||||||||||| |||||| | ||    
T  25725963 agccgatacccatacattttaaggggtatgaccaccatctctgactaccaaaaacaaaaatggtgctatgagccttcaaccaccaataagaatgatactt 25725864  T
Q  174 aacgttttcaataagctc 191  Q
    ||| ||||| | ||||||    
T  25725863 aactttttccaaaagctc 25725846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 111
Target Start/End: Original strand, 55366194 - 55366235
Alignment:
Q  70 agtcagccgatacccaaacaagttaacgggtccgaccaccat 111  Q
    |||||| ||||||||||||||  |||||||||||||||||||    
T  55366194 agtcagtcgatacccaaacaaagtaacgggtccgaccaccat 55366235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University