View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16608_low_3 (Length: 584)
Name: NF16608_low_3
Description: NF16608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16608_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 289; Significance: 1e-162; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 400
Target Start/End: Original strand, 10563157 - 10563543
Alignment:
| Q |
1 |
agaaaagtcaacaagtaaggtaagacaaaaggaggaaattcctagacacttctttttaactagccaatgaatcactatgaaacacgaacacaaacacatg |
100 |
Q |
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| T |
10563157 |
agaaaagtcaacaagtaaggtaagacaaaaggaggaaattcctagacatttctttttaactagcccatgaatcactatgaaacacgaacacaaacacatg |
10563256 |
T |
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| Q |
101 |
gccggacaccagacaaaatgctgacaatgatatgtctagaccccaagtaattgaatgtaactacacgagatcacaagtaattgagtgtaactacatgtgt |
200 |
Q |
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| T |
10563257 |
gacggacaccagacaaaatgctgacaatgatatgtctagaccccaagtaattgaatgtaactacacgagatcacaagtaattgagtgtaactacatgtgt |
10563356 |
T |
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| Q |
201 |
aggtg-tgttttaatgtctaaaaccagacatgtcttaaatctgaagtgtcagtgctacatagtacataacatagaagctaatcacatatgagtagagaca |
299 |
Q |
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| T |
10563357 |
aggtgttgttttaatgtctaaaaccagacatgtcttaaatccaaagtgtcggtgct------------acatagaagctaatcacatatgagtagagaca |
10563444 |
T |
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| Q |
300 |
agacaatataggtaactaagaaaagaagaaagnnnnnnnnnncaagcaggtagtgtttaatagtgcaaaacaaacaattaacacacagagaaacatatta |
399 |
Q |
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| T |
10563445 |
agacgatataggtaactaagaaaagaagaaag--aaaaaaaacaagcaggtagtgtttaatagtgcaaaacaaacaattaacacacagagaaacatatta |
10563542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 437 - 565
Target Start/End: Original strand, 10563579 - 10563716
Alignment:
| Q |
437 |
gactaaacctggtcagaagtagtgctttggtgg---------cggcggcggcgaagaatagtgccaccatgtttgttcattttggcaaatggtgtatgtt |
527 |
Q |
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| T |
10563579 |
gactaaacctggtcagaagtagtgctttggtggtggagacggcggcggcggcgaagaatggtgccaccatgtttgttcattttggcaaatggtgtatgtt |
10563678 |
T |
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| Q |
528 |
gaatttgccaaaggttggcacaaagttttctagcagaa |
565 |
Q |
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| T |
10563679 |
gaatttgccaaaggttggcacaaagttttctagcagaa |
10563716 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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