View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16608_low_5 (Length: 418)
Name: NF16608_low_5
Description: NF16608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16608_low_5 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 166; Significance: 1e-88; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 175 - 400
Target Start/End: Original strand, 36167366 - 36167574
Alignment:
| Q |
175 |
atgatatggggcaatgactattctagagaggaatgatgatgtgtgccatctgccatgttttgaatttctcatcacgggatttgaaagtctatatgtaact |
274 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
36167366 |
atgatatggggcaatgactattctagagaggaatgatgatgtgtgccatctgccatgttttgaatttctcatcacgggatttgaaagtctatatttaact |
36167465 |
T |
|
| Q |
275 |
aatttaaatataacacgtttatttccgaaannnnnnnaaaaaggaaaatgaaacgattatttttatatattttagtgacatgcaaccggtatggacagat |
374 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36167466 |
aatttaaatataacacgttt-----------------aaaaaggaaaatgaaacgattatttttatatattttagtgacatgcaaccggtatggacagat |
36167548 |
T |
|
| Q |
375 |
attttgagagattcaccacaaaaaag |
400 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
36167549 |
attttgagagattcaccacaaaaaag |
36167574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 16 - 154
Target Start/End: Original strand, 36167202 - 36167340
Alignment:
| Q |
16 |
attatactttggattcatatattcattccttccctcttgactttgaatttgaaatccatgcactttcggtaaaatgcgtatgaaaaaggctacattatac |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36167202 |
attatactttggattcatatattcattccttccctcttgactttgaatgtgaaatccatgcactttcggtaaaatgcgtatgaaaaaggctacattatac |
36167301 |
T |
|
| Q |
116 |
atttggatacctgcacgtaaactaatgcctgcatcaata |
154 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36167302 |
atttggatacctgcacgtaaactaatgcctgcatcaata |
36167340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University