View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16608_low_9 (Length: 261)
Name: NF16608_low_9
Description: NF16608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16608_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 162; Significance: 2e-86; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 26 - 243
Target Start/End: Complemental strand, 32000295 - 32000091
Alignment:
| Q |
26 |
acttaaataatttagatttttggtgaaatattgaaattaggacttttgttccaagttaagactctttttgagagactatgaactgcatattggttgttgt |
125 |
Q |
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| T |
32000295 |
acttaaataatttagatttttggtgaaatattgaaattaggacttttgttc-------------tttttgagagactatgaactgcatattggttgttgt |
32000209 |
T |
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| Q |
126 |
aacatatacatccatatataaaagctacatatactagtatagtggtcaactttccaagttaggatgagtactatagaatagtaagcaatcattcatgtgg |
225 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| |
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| T |
32000208 |
aacatatacatccatatataaaagctacatatactactatagtggtcaactttccaagttaggatgagtactgtagtatagtaagcaatcattcatgtgg |
32000109 |
T |
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| Q |
226 |
taactaactggagtatat |
243 |
Q |
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|||||||||||||||||| |
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| T |
32000108 |
taactaactggagtatat |
32000091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 26 - 243
Target Start/End: Complemental strand, 31940985 - 31940764
Alignment:
| Q |
26 |
acttaaataatttagatttttggtgaaatattgaaattaggactttt-gttccaagttaagactctttttgagagactatgaactgcatattggttgttg |
124 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||| ||| |||||||||||||||| |||||||||||||| |||||||||||||| |
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| T |
31940985 |
acttaaataatttaggtttttggtgaaatattgaaattaggactttttgttttaagttaagactctttt-gagagactatgaacatcatattggttgttg |
31940887 |
T |
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| Q |
125 |
taacatatacatccatatataaaagctacatatactagtatagtggtcaactttccaagttaggatgagtactatag----aatagtaagcaatcattca |
220 |
Q |
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|||||||||||||||||||||||||||||||||||| || ||||||||||||||| ||||| |||||||||||| |||||||||||||||||| |
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| T |
31940886 |
taacatatacatccatatataaaagctacatatactgctagtatggtcaactttccaaattagggtgagtactatagtatatatagtaagcaatcattca |
31940787 |
T |
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| Q |
221 |
tgtggtaactaactggagtatat |
243 |
Q |
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| ||||||||||||||||||||| |
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| T |
31940786 |
tatggtaactaactggagtatat |
31940764 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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