View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16609_low_1 (Length: 522)
Name: NF16609_low_1
Description: NF16609
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16609_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 397; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 17 - 505
Target Start/End: Original strand, 49729338 - 49729848
Alignment:
| Q |
17 |
agagaccatagatttttccgcgttgactttggctaaacagtatgtaataaataaactaattttgcctcatagtttcttgaattag----ttaatttgtac |
112 |
Q |
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| T |
49729338 |
agagaccatagatttttccgcgttgactttggctaaacagtatgtaataaataaactaattttgcctcatagtttcttgaattagttagttaatttgtac |
49729437 |
T |
|
| Q |
113 |
tttatgcagcaatcatgttcaagtctcaatatctttccttccaatacctaatcatcatcctcctcctctcaatactgttcattcacttctctcaagctga |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49729438 |
tttatgcagcaatcatgttcaagtctcaatatctttccttccaatacctaatcatcatcctcctcctctcaatactgttcattcacttctctcaagctga |
49729537 |
T |
|
| Q |
213 |
cgttggcactgcttcccattacagccctccctttttacgtaagtgccccctcctatgcctcaactcaacaatagcagcatcctcggccg----gtgtatc |
308 |
Q |
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| T |
49729538 |
cgttggcactgcttcccattacagccctccctttttacgtaagtgccccctcctatgcctcaactcaacaatagcagcatccttggccggtacgtgtatc |
49729637 |
T |
|
| Q |
309 |
agttgcaggaaccgttagatttaaaaagagaataatctttctctcgaaactcaacggttcttaccac-------------tgaaacaacggtagaggatg |
395 |
Q |
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| T |
49729638 |
agttgtaggaaccgttagatttaaaaagagaataatctttctctcgaaactcaacggttcttaccactgatcgatgcaagtgaaacaacggtagaggatg |
49729737 |
T |
|
| Q |
396 |
tacgcttgaaaataaattattagctca----taaataacaaatttgttgtgctttgtggaacgtgacaagacagcgacggcgtgttttgggggagatgcg |
491 |
Q |
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| T |
49729738 |
tacgcttgaaaataa---attagctcataattaaataacaaatttgttgtgctttgtggaacgtgacaagacagcgacggcgtgttttgggggagatgcg |
49729834 |
T |
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| Q |
492 |
tcacaatttccatc |
505 |
Q |
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| T |
49729835 |
tcacaatttccatc |
49729848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 427 - 501
Target Start/End: Complemental strand, 32958909 - 32958835
Alignment:
| Q |
427 |
taacaaatttgttgtgctttgtggaacgtgacaagacagcgacggcgtgttttgggggagatgcgtcacaatttc |
501 |
Q |
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|||||||||||||||| ||| ||||| |||||||| |||| || ||| |||||||||||||||||||||||||| |
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| T |
32958909 |
taacaaatttgttgtgttttatggaatgtgacaaggcagcaacaacgtattttgggggagatgcgtcacaatttc |
32958835 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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