View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16610_high_4 (Length: 309)
Name: NF16610_high_4
Description: NF16610
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16610_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 173; Significance: 5e-93; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 16 - 291
Target Start/End: Original strand, 13663118 - 13663391
Alignment:
| Q |
16 |
tatactattgctagaattctaacctgtaaatgagaaattcaacagaagaataaaacagtaaacatgaacatcaattctagagtnnnnnnnnnnnnnnnnn |
115 |
Q |
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| T |
13663118 |
tatactattgcaagaattctaacctttaaatgagaaattcaacagaagaataaaacagtaaacatgaacatcaatcctagagtaaaaaaaataaaaaaa- |
13663216 |
T |
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| Q |
116 |
ntcattccaacaagaaatgtaaatttacactaatgtagtttatatatgaatacatgatatttctcatgattcttaataatcgtagacaaactttcaattg |
215 |
Q |
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|||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| ||||||||||||||||||| |
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| T |
13663217 |
-tcattctaacaaaaaatgtaaatttacactaatgtagtttatatatgaataaatgatatttctcatgattcctaataacagtagacaaactttcaattg |
13663315 |
T |
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| Q |
216 |
ctttgtatcatattatccaactgctttattattagattttaacgatatggaacaaatccattatagttgcataact |
291 |
Q |
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|||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
13663316 |
ctttatatcatattatccaactgctttattattagatcttaacgatatggaacaaatccattatagttgcataact |
13663391 |
T |
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