View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16610_low_1 (Length: 626)
Name: NF16610_low_1
Description: NF16610
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16610_low_1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 603; Significance: 0; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 603; E-Value: 0
Query Start/End: Original strand, 1 - 615
Target Start/End: Complemental strand, 40110415 - 40109801
Alignment:
| Q |
1 |
gtcctccatatcttaattcatcttagtttgatctgtcagggaacatatttaacttccacagctcgcagttatgctgccgataacaatctccacgaaggcg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40110415 |
gtcctccatatcttaattcatcttagtttgatctgtcagggaacatatttaacttccacagctcgcagttatgctgccgataacaatctccacgaaggcg |
40110316 |
T |
|
| Q |
101 |
caataattggcgacttcaatggagaattctgggctctatttgcactccatcaggtcatcaaattatatcttcactcctgacattgttttatgtttctttg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40110315 |
caataattggcgacttcaatggagaattctgggctctatttgcactccatcaggtcatcaaattatatcttcactcctgacattgttttatgtttctttg |
40110216 |
T |
|
| Q |
201 |
aatgaaaattgtttattttagaagtcaaaaaattgactttcttttctttctgatacatgctttgcaggttattggaaatcttattacatttgctctactc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40110215 |
aatgaaaattgtttattttagaagtcaaaaaaatgattttcttttctttctgatacatgctttgcaggttattggaaatcttattacatttgctctactc |
40110116 |
T |
|
| Q |
301 |
agaaataaccaagtatgtggtggttaatcttcacattttgcaaatattcttataatcatctatttgcttaatccaatcttgttagaaattaagaattgtt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40110115 |
agaaataaccaagtatgtggtggttaatcttcacattttgcaaatattcttataatcatctatttgcttaatccaatcttgttagaaattaagaattgtt |
40110016 |
T |
|
| Q |
401 |
ggtgtttatcatacaggtgggaagtatcaaaggcacaaccttattgtttgttgtattcctttctgttatgacctttggtgcaatactaatgtgctttctt |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40110015 |
ggtgtttatcatacaggtgggaagtatcaaaggcacaaccttattgtttgttgtattcctttctgttatgacctttggtgcaatactaatgtgctttctt |
40109916 |
T |
|
| Q |
501 |
tgtaaaaggagtagcaataaaacacgagaatacaaaaatttaggtactgatattgatgcaagtgaatcatcatccctgaagtctctatgtagatcactca |
600 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40109915 |
cgtaaaaggagtagcaataaaacacgagaatacaaaaatttaggtactgatattgatgcaagtgaatcatcatccctgaagtctctatgtagatcactca |
40109816 |
T |
|
| Q |
601 |
agagttcattctctg |
615 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
40109815 |
agagttcattctctg |
40109801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 23 - 155
Target Start/End: Complemental strand, 40148604 - 40148472
Alignment:
| Q |
23 |
ttagtttgatctgtcagggaacatatttaacttccacagctcgcagttatgctgccgataacaatctccacgaaggcgcaataattggcgacttcaatgg |
122 |
Q |
| |
|
||||||||| || ||||||||||||| |||||||||| || | |||| ||||| |||||||||||||||||||| || ||||||| |||||||| || |
|
|
| T |
40148604 |
ttagtttgaactttcagggaacatatctaacttccactgcacacagtcatgctatagataacaatctccacgaaggtgctgtaattggtgacttcaacgg |
40148505 |
T |
|
| Q |
123 |
agaattctgggctctatttgcactccatcaggt |
155 |
Q |
| |
|
|||||||||||| | | ||||||||||||||| |
|
|
| T |
40148504 |
ggaattctgggctgtttatgcactccatcaggt |
40148472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 419 - 499
Target Start/End: Complemental strand, 40154345 - 40154265
Alignment:
| Q |
419 |
gggaagtatcaaaggcacaaccttattgtttgttgtattcctttctgttatgacctttggtgcaatactaatgtgctttct |
499 |
Q |
| |
|
|||||||| ||| |||||||| ||||||||||| ||||||||||| ||||||||||||||||||||| ||| ||||||||| |
|
|
| T |
40154345 |
gggaagtaccaatggcacaactttattgtttgtcgtattcctttccgttatgacctttggtgcaatattaacgtgctttct |
40154265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 414 - 492
Target Start/End: Complemental strand, 40147708 - 40147630
Alignment:
| Q |
414 |
caggtgggaagtatcaaaggcacaaccttattgtttgttgtattcctttctgttatgacctttggtgcaatactaatgt |
492 |
Q |
| |
|
|||| |||||||| ||| ||||| || |||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
40147708 |
caggggggaagtaccaacggcaccactttattgtttgttgtattccttttcgttatgacctttggtgcaatactaatgt |
40147630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 20 - 159
Target Start/End: Complemental strand, 40155146 - 40155007
Alignment:
| Q |
20 |
atcttagtttgatctgtcagggaacatatttaacttccacagctcgcagttatgctgccgataacaatctccacgaaggcgcaataattggcgacttcaa |
119 |
Q |
| |
|
||||||| || | |||||||||||||||| |||||||||| || |||||| ||||| ||||||||| |||||||||| || ||||||| |||||||| |
|
|
| T |
40155146 |
atcttagattaacctgtcagggaacatatctaacttccactgcacgcagtcatgctatagataacaatttccacgaaggtgcggtaattggtgacttcaa |
40155047 |
T |
|
| Q |
120 |
tggagaattctgggctctatttgcactccatcaggtcatc |
159 |
Q |
| |
|
||||| ||||||| | ||| |||| |||||||||||| |
|
|
| T |
40155046 |
cggagagttctggggtgtatacacacttcatcaggtcatc |
40155007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 261 - 340
Target Start/End: Complemental strand, 40148345 - 40148266
Alignment:
| Q |
261 |
tttgcaggttattggaaatcttattacatttgctctactcagaaataaccaagtatgtggtggttaatcttcacattttg |
340 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||| || || ||||||||||||| |||||| |||||| |
|
|
| T |
40148345 |
tttgcagtttattggaaatcttattacatttgctctactcagtgatgggcaggtatgtggtggttggtcttcatattttg |
40148266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 262 - 331
Target Start/End: Complemental strand, 40154906 - 40154837
Alignment:
| Q |
262 |
ttgcaggttattggaaatcttattacatttgctctactcagaaataaccaagtatgtggtggttaatctt |
331 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||| ||||| || || |||||||||||||| |||| |
|
|
| T |
40154906 |
ttgcagtttattggaaatcttattacatttgctcttctcagtgatgggcaggtatgtggtggttagtctt |
40154837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University