View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16610_low_2 (Length: 585)

Name: NF16610_low_2
Description: NF16610
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16610_low_2
NF16610_low_2
[»] chr4 (34 HSPs)
chr4 (1-228)||(53958684-53958919)
chr4 (231-452)||(1535726-1535947)
chr4 (234-456)||(49284308-49284530)
chr4 (455-567)||(53958580-53958692)
chr4 (231-455)||(35018888-35019111)
chr4 (300-455)||(25954702-25954857)
chr4 (300-455)||(34240945-34241100)
chr4 (235-455)||(52632470-52632680)
chr4 (236-454)||(46583508-46583716)
chr4 (300-455)||(37801285-37801440)
chr4 (231-410)||(36012138-36012316)
chr4 (344-455)||(16338309-16338420)
chr4 (231-410)||(17888502-17888683)
chr4 (231-457)||(31377339-31377565)
chr4 (231-384)||(16338165-16338318)
chr4 (314-410)||(322584-322682)
chr4 (301-410)||(54090176-54090286)
chr4 (301-389)||(20818584-20818673)
chr4 (301-405)||(9742555-9742661)
chr4 (301-410)||(11054448-11054562)
chr4 (313-410)||(12792265-12792364)
chr4 (301-410)||(46473989-46474100)
chr4 (301-410)||(50328791-50328902)
chr4 (301-389)||(19124760-19124849)
chr4 (313-380)||(10094427-10094495)
chr4 (313-410)||(35322738-35322837)
chr4 (234-283)||(36851342-36851391)
chr4 (231-277)||(11054585-11054631)
chr4 (313-363)||(47084056-47084106)
chr4 (230-260)||(25954885-25954915)
chr4 (301-410)||(33981997-33982110)
chr4 (300-334)||(36851408-36851442)
chr4 (231-260)||(34241128-34241157)
chr4 (315-363)||(5780790-5780838)
[»] chr8 (16 HSPs)
chr8 (231-455)||(22324548-22324772)
chr8 (231-457)||(35806744-35806970)
chr8 (230-455)||(21525310-21525535)
chr8 (231-452)||(42072383-42072604)
chr8 (231-410)||(33934321-33934500)
chr8 (231-455)||(42013824-42014048)
chr8 (301-410)||(26021392-26021502)
chr8 (303-389)||(24065291-24065377)
chr8 (311-410)||(19334779-19334879)
chr8 (300-389)||(21488084-21488173)
chr8 (313-410)||(2271197-2271289)
chr8 (301-355)||(16523158-16523212)
chr8 (301-410)||(10112042-10112153)
chr8 (231-283)||(26021520-26021573)
chr8 (313-389)||(43282885-43282962)
chr8 (358-389)||(34697469-34697500)
[»] chr7 (17 HSPs)
chr7 (231-458)||(34707065-34707292)
chr7 (231-455)||(44164695-44164919)
chr7 (231-455)||(10576625-10576849)
chr7 (231-399)||(34259526-34259694)
chr7 (231-455)||(29555891-29556115)
chr7 (300-454)||(32876551-32876705)
chr7 (231-455)||(29238095-29238319)
chr7 (300-455)||(24320460-24320614)
chr7 (231-392)||(29981065-29981226)
chr7 (301-410)||(17303136-17303248)
chr7 (301-410)||(33057679-33057789)
chr7 (301-454)||(19334582-19334736)
chr7 (301-410)||(10334173-10334284)
chr7 (304-410)||(26284404-26284510)
chr7 (313-384)||(9770682-9770753)
chr7 (301-363)||(15017817-15017879)
chr7 (427-455)||(34259484-34259512)
[»] chr2 (23 HSPs)
chr2 (231-452)||(42769710-42769931)
chr2 (231-455)||(14941996-14942220)
chr2 (231-457)||(14186390-14186616)
chr2 (231-456)||(19181499-19181724)
chr2 (231-410)||(29846439-29846618)
chr2 (231-452)||(40277240-40277461)
chr2 (231-455)||(3956523-3956748)
chr2 (303-410)||(1387312-1387420)
chr2 (301-410)||(6318480-6318592)
chr2 (315-410)||(3597903-3597998)
chr2 (313-410)||(14539738-14539837)
chr2 (231-283)||(3597842-3597894)
chr2 (301-410)||(40780050-40780162)
chr2 (303-410)||(33009667-33009777)
chr2 (315-386)||(43139766-43139839)
chr2 (301-410)||(41674728-41674840)
chr2 (313-410)||(28321737-28321836)
chr2 (315-410)||(23685406-23685503)
chr2 (231-274)||(1386114-1386157)
chr2 (231-268)||(28321667-28321704)
chr2 (315-386)||(25665244-25665316)
chr2 (424-452)||(29846396-29846424)
chr2 (328-410)||(32486239-32486323)
[»] chr5 (26 HSPs)
chr5 (231-462)||(37168985-37169216)
chr5 (231-455)||(23218437-23218661)
chr5 (232-455)||(38397550-38397773)
chr5 (231-449)||(6257362-6257580)
chr5 (231-410)||(16618522-16618701)
chr5 (231-451)||(39862439-39862659)
chr5 (231-452)||(15631568-15631790)
chr5 (301-457)||(10081094-10081251)
chr5 (231-410)||(8456915-8457096)
chr5 (301-410)||(36769096-36769206)
chr5 (301-407)||(614414-614522)
chr5 (304-452)||(9738008-9738156)
chr5 (301-410)||(25560349-25560460)
chr5 (301-410)||(11856290-11856401)
chr5 (301-410)||(42119617-42119728)
chr5 (313-389)||(6174762-6174840)
chr5 (301-381)||(10115185-10115266)
chr5 (301-410)||(27916134-27916246)
chr5 (313-386)||(33271304-33271377)
chr5 (301-450)||(29491436-29491585)
chr5 (301-389)||(29790241-29790328)
chr5 (301-384)||(10052522-10052606)
chr5 (321-389)||(3341162-3341230)
chr5 (231-282)||(10081272-10081323)
chr5 (343-388)||(33188406-33188451)
chr5 (315-363)||(19322058-19322106)
[»] chr6 (19 HSPs)
chr6 (231-455)||(24694603-24694827)
chr6 (231-456)||(9231806-9232031)
chr6 (300-410)||(14309819-14309929)
chr6 (231-454)||(13627494-13627716)
chr6 (300-381)||(1727954-1728035)
chr6 (358-457)||(11084560-11084659)
chr6 (301-389)||(34103703-34103791)
chr6 (313-410)||(27863695-27863793)
chr6 (313-410)||(28750684-28750783)
chr6 (301-405)||(13103140-13103246)
chr6 (313-410)||(11279536-11279634)
chr6 (313-389)||(11212689-11212765)
chr6 (300-351)||(24497595-24497646)
chr6 (231-282)||(11084715-11084765)
chr6 (346-407)||(24500767-24500830)
chr6 (231-277)||(34383363-34383409)
chr6 (300-333)||(11084664-11084697)
chr6 (423-455)||(1728041-1728073)
chr6 (315-355)||(8412717-8412757)
[»] chr3 (27 HSPs)
chr3 (231-455)||(21853148-21853373)
chr3 (231-452)||(40845869-40846090)
chr3 (231-455)||(44994920-44995145)
chr3 (231-454)||(13856052-13856275)
chr3 (231-455)||(5391410-5391633)
chr3 (300-455)||(23467515-23467671)
chr3 (231-454)||(8950456-8950679)
chr3 (303-410)||(32352844-32352951)
chr3 (301-410)||(20382514-20382625)
chr3 (301-410)||(1781757-1781868)
chr3 (301-410)||(43347358-43347468)
chr3 (301-410)||(19649394-19649506)
chr3 (300-410)||(3178699-3178810)
chr3 (301-410)||(36539627-36539738)
chr3 (302-406)||(54546904-54547009)
chr3 (313-410)||(10839414-10839513)
chr3 (301-409)||(8926762-8926872)
chr3 (315-401)||(22845398-22845484)
chr3 (301-387)||(46685805-46685891)
chr3 (301-410)||(48206849-48206959)
chr3 (309-400)||(47889731-47889824)
chr3 (315-410)||(33103739-33103835)
chr3 (313-410)||(6280393-6280491)
chr3 (313-385)||(51336231-51336303)
chr3 (231-283)||(20382642-20382693)
chr3 (231-277)||(36539762-36539808)
chr3 (346-410)||(36826021-36826087)
[»] chr1 (27 HSPs)
chr1 (234-407)||(5974988-5975161)
chr1 (231-455)||(42517246-42517474)
chr1 (231-457)||(7742731-7742957)
chr1 (300-453)||(3346740-3346893)
chr1 (231-410)||(49902465-49902644)
chr1 (231-456)||(48392358-48392581)
chr1 (231-455)||(23908237-23908451)
chr1 (231-410)||(47022699-47022878)
chr1 (231-455)||(10155968-10156192)
chr1 (300-455)||(29149569-29149724)
chr1 (231-407)||(38859849-38860027)
chr1 (301-410)||(10907670-10907781)
chr1 (301-410)||(42456566-42456678)
chr1 (314-382)||(5558334-5558402)
chr1 (301-410)||(26835333-26835444)
chr1 (321-389)||(30252787-30252856)
chr1 (313-389)||(30745361-30745438)
chr1 (313-389)||(30766812-30766889)
chr1 (301-410)||(14796871-14796982)
chr1 (301-410)||(14805745-14805856)
chr1 (301-410)||(44107410-44107521)
chr1 (231-283)||(29149510-29149562)
chr1 (313-385)||(26511667-26511739)
chr1 (346-388)||(8430508-8430551)
chr1 (231-283)||(3346910-3346962)
chr1 (301-389)||(13131914-13132002)
chr1 (313-389)||(45968685-45968761)
[»] scaffold0079 (2 HSPs)
scaffold0079 (344-455)||(54440-54551)
scaffold0079 (231-384)||(54542-54695)
[»] scaffold0045 (1 HSPs)
scaffold0045 (301-389)||(34474-34563)


Alignment Details
Target: chr4 (Bit Score: 174; Significance: 2e-93; HSPs: 34)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 53958919 - 53958684
Alignment:
Q  1 aaaaaacgattcccctaaaaattcaagaagataaattaaatgagaagtattttagaattattata--------ttggataaataagtaaatttactaata 92  Q
    |||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| |||        |||||||||||||||||||||||||||    
T  53958919 aaaaaacgattcacctaaaaattcaagaagttaaattaaatgagaagtattttagaattatcataactaaatattggataaataagtaaatttactaata 53958820  T
Q  93 tttcattcnnnnnnncctgatgtaaaatttgtttataataaaatgaattttgtaaagtaaaaatatgagtcgtttgatgttgattcaatggtagagattc 192  Q
    ||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53958819 tttcattcaaaaaaacctgatgtaaaatttgtttataataaaatgaattttgtaaagtaaaaatatgagtcgtttgatgttgattcaatggtagagattc 53958720  T
Q  193 aataattgcatgacgacatacagaggagctaacatg 228  Q
    ||||||||||||||||||||||||||||||||||||    
T  53958719 aataattgcatgacgacatacagaggagctaacatg 53958684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 231 - 452
Target Start/End: Complemental strand, 1535947 - 1535726
Alignment:
Q  231 gggcggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaannnnnnnnnnnnnnnngtgtaaatccctatgaatttcttatataaac 330  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||                |||||||||||||||||||||||||||||||    
T  1535947 gggcggttctaaggcccggcgacccggggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaac 1535848  T
Q  331 ccctgtaaattaggcaatttctttacattttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaannnnnnnnnngtccgggctt 430  Q
    |||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||          | ||||||||    
T  1535847 ccctataaattgggcaatttctttacattttttattatttgcttgcaatttcttatgtatgccctataaatgtgttgcaaatttttttttgcccgggctt 1535748  T
Q  431 tacaatattcctggctccgcca 452  Q
    ||||||||||||||||||||||    
T  1535747 tacaatattcctggctccgcca 1535726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 234 - 456
Target Start/End: Complemental strand, 49284530 - 49284308
Alignment:
Q  234 cggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaannnnnnnnnnnnnnnngtgtaaatccctatgaatttcttatataaacccc 333  Q
    |||||||||||||| |||| |||||||||||| |||||||||||||||||                ||||||||||||||||||||||||||||||||||    
T  49284530 cggttctaaggcccagcgaacccgggcactcgtccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaacccc 49284431  T
Q  334 tgtaaattaggcaatttctttacattttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaannnnnnnnnngtccgggctttac 433  Q
    | |||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||          | ||||| |||||    
T  49284430 tataaattgggcaatttctttacattttttattatttgtttgcaatttcttatgtacgccctataaatgtgttgcaaatttttttttgcccgggttttac 49284331  T
Q  434 aatattcctggctccgccactgc 456  Q
    |||||||||||||||||||||||    
T  49284330 aatattcctggctccgccactgc 49284308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 455 - 567
Target Start/End: Complemental strand, 53958692 - 53958580
Alignment:
Q  455 gctaacatgggttcatgatttagcaactataaatatgcatgcatggtttgttgaattttcatcctgttcaactcatttgtttccaaaataatcttgtgtt 554  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53958692 gctaacatgggttcatgatttagcaactataaatatgcatgcatggtttgttgaattttcatcctgttcaactcatttgtttccaaaataatcttgtgtt 53958593  T
Q  555 tttgggatatcat 567  Q
    |||||||||||||    
T  53958592 tttgggatatcat 53958580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 231 - 455
Target Start/End: Complemental strand, 35019111 - 35018888
Alignment:
Q  231 gggcggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaannnnnnnnnnnnnnnngtgtaaatccctatgaatttcttatataaac 330  Q
    ||||||||||||||||||||||||| |||||||||||||||||| ||||||||                |||||||||| ||||||||||||||||||||    
T  35019111 gggcggttctaaggcccggcgaccctgggcactcgcccgggctctgggccaaattttttacaatttcttgtgtaaatcc-tatgaatttcttatataaac 35019013  T
Q  331 ccctgtaaattaggcaatttctttacattttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaannnnnnnnnngtccgggctt 430  Q
    || | ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||          ||||||||||    
T  35019012 ccttataaattaggtaatttctttacattttttattatttgcttgcaatttcttatgtacaccttataaatgtgttgcaaatttttttttgtccgggctt 35018913  T
Q  431 tacaatattcctggctccgccactg 455  Q
    |||||||||||||||||||||||||    
T  35018912 tacaatattcctggctccgccactg 35018888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 300 - 455
Target Start/End: Complemental strand, 25954857 - 25954702
Alignment:
Q  300 gtgtaaatccctatgaatttcttatataaacccctgtaaattaggcaatttctttacattttttattatttgcttgcaatttcttatgtacgccctataa 399  Q
    |||||||| |||||||||||||||||||||| ||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25954857 gtgtaaattcctatgaatttcttatataaactcctataaattgggcaatttctttacattttttattatttgcttgcaatttcttatgtacgccctataa 25954758  T
Q  400 atgtgttgcaannnnnnnnnngtccgggctttacaatattcctggctccgccactg 455  Q
    |||||||||||          | |||||||||||||||||||||||||||||||||    
T  25954757 atgtgttgcaaatttttttttgcccgggctttacaatattcctggctccgccactg 25954702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 300 - 455
Target Start/End: Complemental strand, 34241100 - 34240945
Alignment:
Q  300 gtgtaaatccctatgaatttcttatataaacccctgtaaattaggcaatttctttacattttttattatttgcttgcaatttcttatgtacgccctataa 399  Q
    ||||| ||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34241100 gtgtagatccctatgaatttcttatataaacccctataaattgggcaatttctttacattttttattatttgcttgcaatttcttatgtacgccctataa 34241001  T
Q  400 atgtgttgcaannnnnnnnnngtccgggctttacaatattcctggctccgccactg 455  Q
    |||||||| ||          | |||||||||||||||||||||||||||||||||    
T  34241000 atgtgttgtaaaattttttttgcccgggctttacaatattcctggctccgccactg 34240945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 235 - 455
Target Start/End: Complemental strand, 52632680 - 52632470
Alignment:
Q  235 ggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaannnnnnnnnnnnnnnngtgtaaatccctatgaatttcttatataaacccct 334  Q
    ||||||||||||||| ||||||||||||| ||| |||||||||||||||                |||||||||||||||||||||||||||||| ||||    
T  52632680 ggttctaaggcccggtgaccccgggcacttgcctgggctccgggccaaa----------tttcttgtgtaaatccctatgaatttcttatataaatccct 52632591  T
Q  335 gtaaattaggcaatttctttacattttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaannnnnnnnnngtccgggctttaca 434  Q
     |||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||          | ||||||||||||    
T  52632590 ataaattgggcaatttctttacattttttaatatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaatttttttttgcccgggctttaca 52632491  T
Q  435 atattcctggctccgccactg 455  Q
    |||||||||||||||||||||    
T  52632490 atattcctggctccgccactg 52632470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 236 - 454
Target Start/End: Original strand, 46583508 - 46583716
Alignment:
Q  236 gttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaannnnnnnnnnnnnnnngtgtaaatccctatgaatttcttatataaacccctg 335  Q
    ||||||||| ||||||||||||||||||||||||||||||||| ||||                |||||||||||||||||||||||||||||||||||     
T  46583508 gttctaaggtccggcgaccccgggcactcgcccgggctccgggtcaaatttttt----------gtgtaaatccctatgaatttcttatataaaccccta 46583597  T
Q  336 taaattaggcaatttctttacattttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaannnnnnnnnngtccgggctttacaa 435  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||          | |||| ||||||||    
T  46583598 taaattaggcaatttctttacattttttattatttgcttgcaatttcttatgtacgccatataaatgtgttgtaaatttttttttgcccggactttacaa 46583697  T
Q  436 tattcctggctccgccact 454  Q
    |||||||| ||||||||||    
T  46583698 tattcctgactccgccact 46583716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 300 - 455
Target Start/End: Original strand, 37801285 - 37801440
Alignment:
Q  300 gtgtaaatccctatgaatttcttatataaacccctgtaaattaggcaatttctttacattttttattatttgcttgcaatttcttatgtacgccctataa 399  Q
    ||||||||  |||||||||| ||||||||| |||| |||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37801285 gtgtaaatttctatgaattttttatataaatccctataaattgggcaaattctttacattttttattatttgcttgcaatttcttatgtacgccctataa 37801384  T
Q  400 atgtgttgcaannnnnnnnnngtccgggctttacaatattcctggctccgccactg 455  Q
    |||||||||||          | |||||||||||||||||||||||||||||||||    
T  37801385 atgtgttgcaaatttttttttgcccgggctttacaatattcctggctccgccactg 37801440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 231 - 410
Target Start/End: Original strand, 36012138 - 36012316
Alignment:
Q  231 gggcggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaannnnnnnnnnnnnnnngtgtaaatccctatgaatttcttatataaac 330  Q
    ||||||||||||||||||||||||| ||||||||| | ||||| |||||||||                |||||||||||||||||||||||||||||||    
T  36012138 gggcggttctaaggcccggcgaccctgggcactcgtc-gggcttcgggccaaattttttgcaattttttgtgtaaatccctatgaatttcttatataaac 36012236  T
Q  331 ccctgtaaattaggcaatttctttacattttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaa 410  Q
    |||| |||||| ||||||||||||||||||||||||||||||||||||||| ||||||| | | ||||||||||||||||    
T  36012237 ccctataaattgggcaatttctttacattttttattatttgcttgcaattttttatgtatgtcatataaatgtgttgcaa 36012316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 344 - 455
Target Start/End: Original strand, 16338309 - 16338420
Alignment:
Q  344 gcaatttctttacattttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaannnnnnnnnngtccgggctttacaatattcctg 443  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          | ||||||||||||||||| |||    
T  16338309 gcaatttctttacattttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaattttttttttgcccgggctttacaatatttctg 16338408  T
Q  444 gctccgccactg 455  Q
    ||||||||||||    
T  16338409 gctccgccactg 16338420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 231 - 410
Target Start/End: Original strand, 17888502 - 17888683
Alignment:
Q  231 gggcggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaannnnnnnnnnnnnnnngtgtaaatccctatgaatttcttatataaac 330  Q
    ||||||||||| |||| |||||||||||||||||||||||||||||| |||||                 ||||||| |||||||||||||||||||| |    
T  17888502 gggcggttctatggccaggcgaccccgggcactcgcccgggctccggcccaaatttttttcaatttcttatgtaaattcctatgaatttcttatataacc 17888601  T
Q  331 ccctgtaaattaggcaatttctttaca-ttttttattatttgcttgcaatttcttatgt-acgccctataaatgtgttgcaa 410  Q
    |||| |||||| ||||||||||||| | ||||||||||||||||||||||||||||||| |  |||||||||||||||||||    
T  17888602 ccctataaattgggcaatttctttagatttttttattatttgcttgcaatttcttatgtaaacccctataaatgtgttgcaa 17888683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 231 - 457
Target Start/End: Complemental strand, 31377565 - 31377339
Alignment:
Q  231 gggcggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaannnnnnnnnnnnnnnngtgtaaatccctatgaatttcttatataaac 330  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||| |||||                 |||||||||||||||||||||||||||| |    
T  31377565 gggcggttctatggcccggcgaccccgggcactcgcccgggctccggcccaaattttttcaatttctta-tgtaaatccctatgaatttcttatataacc 31377467  T
Q  331 ccctgtaaattaggcaatttctttacatttttt-attatttgcttgcaatttcttatgtacgcc-ctataaatgtgttgcaannnnnnnnnngtccgggc 428  Q
    | || |||||| ||||||||||||| ||||||| | ||||||||||||||||||||||||  || |||||||||||||||||          | ||||||    
T  31377466 ctctataaattgggcaatttctttagattttttaactatttgcttgcaatttcttatgtaaaccgctataaatgtgttgcaa-tttttttttgcccgggc 31377368  T
Q  429 tttacaatattcctggctccgccactgct 457  Q
    ||||||||| |||||||||||||||||||    
T  31377367 tttacaataatcctggctccgccactgct 31377339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 231 - 384
Target Start/End: Original strand, 16338165 - 16338318
Alignment:
Q  231 gggcggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaannnnnnnnnnnnnnnngtgtaaatccctatgaatttcttatataaac 330  Q
    ||||||||||||||||||||||||||||||| ||||||||  ||||||||||                 |||||||| ||||||||||| |||||||||     
T  16338165 gggcggttctaaggcccggcgaccccgggcattcgcccggattccgggccaatttttttgcaattttttgtgtaaattcctatgaattttttatataaat 16338264  T
Q  331 ccctgtaaattaggcaatttctttacattttttattatttgcttgcaatttctt 384  Q
    |||| |||||| | ||||||||||||||||||||||||||||||||||||||||    
T  16338265 ccctataaattggacaatttctttacattttttattatttgcttgcaatttctt 16338318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 314 - 410
Target Start/End: Original strand, 322584 - 322682
Alignment:
Q  314 gaatttcttatataaacccctgtaaattaggcaatttctttacatttttt-attatttgcttgcaatttcttatgtacgc-cctataaatgtgttgcaa 410  Q
    ||||||||||||||||||||| |||||| | ||||||||||| ||||||| ||||||||||||||||||||||||||  | ||| ||||||||||||||    
T  322584 gaatttcttatataaacccctataaattggacaatttctttaaattttttgattatttgcttgcaatttcttatgtaaacacctgtaaatgtgttgcaa 322682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 301 - 410
Target Start/End: Complemental strand, 54090286 - 54090176
Alignment:
Q  301 tgtaaatccctatgaatttcttatataaacccctgtaaattaggcaatttctttacattttttattatttgcttgcaa-tttcttatgtacgccctataa 399  Q
    ||||||||||| ||||||| |||||||||| | | |||||| |||||||| |||| |||||||||||||||||||||| ||| |||||||  |||||||     
T  54090286 tgtaaatccctctgaatttattatataaactcttataaattgggcaatttttttagattttttattatttgcttgcaatttttttatgtaaaccctatag 54090187  T
Q  400 atgtgttgcaa 410  Q
    |||||||||||    
T  54090186 atgtgttgcaa 54090176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 301 - 389
Target Start/End: Complemental strand, 20818673 - 20818584
Alignment:
Q  301 tgtaaatccctatgaatttcttatataaacccctgtaaattaggcaatttctttacatttttt-attatttgcttgcaatttcttatgta 389  Q
    |||||||||||||||||||||||||||||| ||| |||||| | |||||| |||| ||||||| |||||||| |||||||||||||||||    
T  20818673 tgtaaatccctatgaatttcttatataaactcctataaattggtcaatttttttagattttttgattatttgtttgcaatttcttatgta 20818584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 301 - 405
Target Start/End: Original strand, 9742555 - 9742661
Alignment:
Q  301 tgtaaatccctatgaatttcttatataaacccctgtaaattaggcaatttctttacatttttt-attatttgcttgcaatttcttatgtacgc-cctata 398  Q
    ||||||| ||| |||||||||||||| ||||||| |||||| ||||||||||||| ||||||| ||||||| | ||||||||||||||||  | ||||||    
T  9742555 tgtaaattcctctgaatttcttatattaacccctataaattgggcaatttctttagattttttgattattttcatgcaatttcttatgtaaacacctata 9742654  T
Q  399 aatgtgt 405  Q
    |||||||    
T  9742655 aatgtgt 9742661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 301 - 410
Target Start/End: Complemental strand, 11054562 - 11054448
Alignment:
Q  301 tgtaaatccctatgaatttcttatataaacccctgtaaattaggcaatttcttta-catttttt---attatttgcttgcaatttcttatgtacgcc-ct 395  Q
    ||||||||||||||||||||||||||||||| || |||||| |||||| ||||||  |||||||    |||||||||||||||||||||||||  ||  |    
T  11054562 tgtaaatccctatgaatttcttatataaacctctataaattgggcaatctctttagtattttttttatttatttgcttgcaatttcttatgtaaaccttt 11054463  T
Q  396 ataaatgtgttgcaa 410  Q
    |||||||||||||||    
T  11054462 ataaatgtgttgcaa 11054448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 313 - 410
Target Start/End: Original strand, 12792265 - 12792364
Alignment:
Q  313 tgaatttcttatataaacccctgtaaattaggcaatttctttacattttt-tattatttgcttgcaatttcttatgtacgc-cctataaatgtgttgcaa 410  Q
    |||||||||||||||||||||| |||||| ||||||| ||||| ||||||  |||||||||||| |||||||||| ||  |  |||||||||||||||||    
T  12792265 tgaatttcttatataaacccctataaattgggcaattactttagatttttagattatttgcttgaaatttcttatataaacatctataaatgtgttgcaa 12792364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 301 - 410
Target Start/End: Complemental strand, 46474100 - 46473989
Alignment:
Q  301 tgtaaatccctatgaatttcttatataaacccctgtaaattaggcaatttctttacattttt-tattatttgcttgcaatttcttatgt-acgccctata 398  Q
    ||||||| ||| ||||||| |||||||||||| | ||||||   ||||||||||| |||||| ||||||||||||| |||||||||||| |  || ||||    
T  46474100 tgtaaattcctgtgaattttttatataaacccatataaattgtacaatttctttagatttttgtattatttgcttgtaatttcttatgtaaatccttata 46474001  T
Q  399 aatgtgttgcaa 410  Q
    ||||||||||||    
T  46474000 aatgtgttgcaa 46473989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 301 - 410
Target Start/End: Complemental strand, 50328902 - 50328791
Alignment:
Q  301 tgtaaatccctatgaatttcttatataaacccctgtaaattaggcaatttctttaca-ttttttattatttgcttgcaatttcttatgtacgccc-tata 398  Q
    ||||||| ||| | ||||||||||||||||| || |||||| | ||||||||||| | ||||||||||||  |||||||||| |||||||  ||| ||||    
T  50328902 tgtaaattcctcttaatttcttatataaacctctataaattggacaatttctttaaatttttttattattcacttgcaattttttatgtaaacccttata 50328803  T
Q  399 aatgtgttgcaa 410  Q
    ||||||||||||    
T  50328802 aatgtgttgcaa 50328791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 301 - 389
Target Start/End: Original strand, 19124760 - 19124849
Alignment:
Q  301 tgtaaatccctatgaatttcttatataaacccctgtaaattaggcaatttctttaca-ttttttattatttgcttgcaatttcttatgta 389  Q
    ||||||| ||| ||||||||||||||||||  |||||||||   ||||||||||| | ||||||||||||| ||| ||||||||||||||    
T  19124760 tgtaaattcctctgaatttcttatataaacatctgtaaattgatcaatttctttaaatttttttattatttacttacaatttcttatgta 19124849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 313 - 380
Target Start/End: Original strand, 10094427 - 10094495
Alignment:
Q  313 tgaatttcttatataaacccctgtaaattaggcaatttctttacatttttt-attatttgcttgcaatt 380  Q
    |||||||||||||||||||||| |||||| || ||||| |||| ||||||| |||||||||||||||||    
T  10094427 tgaatttcttatataaacccctataaattgggtaatttatttagattttttgattatttgcttgcaatt 10094495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 313 - 410
Target Start/End: Original strand, 35322738 - 35322837
Alignment:
Q  313 tgaatttcttatataaacccctgtaaattaggcaatttctttacatttttt-attatttgcttgcaatttcttatgt-acgccctataaatgtgttgcaa 410  Q
    ||||| ||||||||||||| || ||||||   ||||||||||| ||||||| ||||||||||||||||||||||| | |  ||||||||| |||||||||    
T  35322738 tgaatctcttatataaacctctataaattgaacaatttctttagattttttgattatttgcttgcaatttcttatataaacccctataaaagtgttgcaa 35322837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 234 - 283
Target Start/End: Original strand, 36851342 - 36851391
Alignment:
Q  234 cggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaa 283  Q
    ||||| |||||||| ||||||||||||||||||| |||||||||||||||    
T  36851342 cggttttaaggcccagcgaccccgggcactcgcctgggctccgggccaaa 36851391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 231 - 277
Target Start/End: Complemental strand, 11054631 - 11054585
Alignment:
Q  231 gggcggttctaaggcccggcgaccccgggcactcgcccgggctccgg 277  Q
    ||||||||||| ||||||||||||||| |||||| ||||||||||||    
T  11054631 gggcggttctatggcccggcgaccccgagcactcacccgggctccgg 11054585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 313 - 363
Target Start/End: Complemental strand, 47084106 - 47084056
Alignment:
Q  313 tgaatttcttatataaacccctgtaaattaggcaatttctttacatttttt 363  Q
    |||||||||||||||||||||| |||||| || |||||||||| |||||||    
T  47084106 tgaatttcttatataaacccctataaattgggtaatttctttagatttttt 47084056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 230 - 260
Target Start/End: Complemental strand, 25954915 - 25954885
Alignment:
Q  230 agggcggttctaaggcccggcgaccccgggc 260  Q
    |||||||||||||||||||||||||||||||    
T  25954915 agggcggttctaaggcccggcgaccccgggc 25954885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 301 - 410
Target Start/End: Complemental strand, 33982110 - 33981997
Alignment:
Q  301 tgtaaatccctatgaatttcttatataaacccctgtaaattaggcaatttctttacatt-ttttatta--tttgcttgcaatttcttatgtacgccc-ta 396  Q
    ||||||||||| | |||||||||||||||| | | ||||||||  |||||||||| ||| | ||| ||  |||||||||||||| |||||||  ||| |     
T  33982110 tgtaaatccctctaaatttcttatataaactcttataaattagataatttctttagattgtattaatatttttgcttgcaattttttatgtaaacccatg 33982011  T
Q  397 taaatgtgttgcaa 410  Q
    ||||||||||||||    
T  33982010 taaatgtgttgcaa 33981997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 300 - 334
Target Start/End: Original strand, 36851408 - 36851442
Alignment:
Q  300 gtgtaaatccctatgaatttcttatataaacccct 334  Q
    |||||||||||||||||||| ||||||||||||||    
T  36851408 gtgtaaatccctatgaatttattatataaacccct 36851442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 231 - 260
Target Start/End: Complemental strand, 34241157 - 34241128
Alignment:
Q  231 gggcggttctaaggcccggcgaccccgggc 260  Q
    ||||||||||||||||||||||||||||||    
T  34241157 gggcggttctaaggcccggcgaccccgggc 34241128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 315 - 363
Target Start/End: Original strand, 5780790 - 5780838
Alignment:
Q  315 aatttcttatataaacccctgtaaattaggcaatttctttacatttttt 363  Q
    ||||||||||||||| || | |||||| ||||||||||||| |||||||    
T  5780790 aatttcttatataaatccttataaattgggcaatttctttaaatttttt 5780838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 131; Significance: 1e-67; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 231 - 455
Target Start/End: Complemental strand, 22324772 - 22324548
Alignment:
Q  231 gggcggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaannnnnnnnnnnnnnnngtgtaaatccctatgaatttcttatataaac 330  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||                |||||||||||||||||||||||||||||||    
T  22324772 gggcggttctaaggcccggcaaccccgggcactcgcccgggctccgggccaaattttttgtaatttcttgtgtaaatccctatgaatttcttatataaac 22324673  T
Q  331 ccctgtaaattaggcaatttctttacattttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaannnnnnnnnngtccgggctt 430  Q
    |||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          | ||||||||    
T  22324672 ccctataaattgggcaatttctttacattttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaattttttttttgcccgggctt 22324573  T
Q  431 tacaatattcctggctccgccactg 455  Q
    |||||||||||||||||||||||||    
T  22324572 tacaatattcctggctccgccactg 22324548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 231 - 457
Target Start/End: Complemental strand, 35806970 - 35806744
Alignment:
Q  231 gggcggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaannnnnnnnnnnnnnnngtgtaaatccctatgaatttcttatataaac 330  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||                ||||||||| |||||||||||||||||||||    
T  35806970 gggcggttctaaggcccggcgaccccgggcactcggccgggctccgggccaaattttttgcaatttcttgtgtaaatctctatgaatttcttatataaac 35806871  T
Q  331 ccctgtaaattaggcaatttctttacattttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaannnnnnnnnngtccgggctt 430  Q
    |||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||          | |||| |||    
T  35806870 ccctataaattgggcaatttctttacattttttattatttgcttgcaatttcttatgtacaccctataaatgtgttgcaaatttttttttgcccggactt 35806771  T
Q  431 tacaatattcctggctccgccactgct 457  Q
    || ||||||||||||||||||||||||    
T  35806770 tagaatattcctggctccgccactgct 35806744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 230 - 455
Target Start/End: Complemental strand, 21525535 - 21525310
Alignment:
Q  230 agggcggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaannnnnnnnnnnnnnnngtgtaaatccctatgaatttcttatataaa 329  Q
    |||||||||||||||||||| ||||||||||||||||| |||||||||| ||||                ||||||||||||||||||||||||||||||    
T  21525535 agggcggttctaaggcccggtgaccccgggcactcgccagggctccgggtcaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaa 21525436  T
Q  330 cccctgtaaattaggcaatttctttacattttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaannnnnnnnnngtccgggct 429  Q
    ||||| |||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          | |||| ||    
T  21525435 cccctataaattggacaatttctttacattttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaatttgtttttgcccggact 21525336  T
Q  430 ttacaatattcctggctccgccactg 455  Q
    ||||||||||||||||||| ||||||    
T  21525335 ttacaatattcctggctccaccactg 21525310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 231 - 452
Target Start/End: Complemental strand, 42072604 - 42072383
Alignment:
Q  231 gggcggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaannnnnnnnnnnnnnnngtgtaaatccctatgaatttcttatataaac 330  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||                 |||||||||||||||||||||||||||||||    
T  42072604 gggcggttctatggcccggcgaccccgggcactcgcccgggctccgggccaatttttttgcaatttcttgtgtaaatccctatgaatttcttatataaac 42072505  T
Q  331 ccctgtaaattaggcaatttctttacattttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaannnnnnnnnngtccgggctt 430  Q
    |||| |||||| | |||||||||||||||||||||||||||||||||||||||||||||  |  ||||||||||||||||          | ||||||||    
T  42072504 ccctataaattggacaatttctttacattttttattatttgcttgcaatttcttatgtaaacaatataaatgtgttgcaaatttttttttgcccgggctt 42072405  T
Q  431 tacaatattcctggctccgcca 452  Q
    ||||||||||||||||||||||    
T  42072404 tacaatattcctggctccgcca 42072383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 231 - 410
Target Start/End: Original strand, 33934321 - 33934500
Alignment:
Q  231 gggcggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaannnnnnnnnnnnnnnngtgtaaatccctatgaatttcttatataaac 330  Q
    |||||||| |||||||||||||||||||||||||||||||||||| |||||||                 ||||||| ||||||||||||||||||||||    
T  33934321 gggcggttttaaggcccggcgaccccgggcactcgcccgggctccaggccaaattttttgcaatttcttttgtaaattcctatgaatttcttatataaac 33934420  T
Q  331 ccctgtaaattaggcaatttctttacattttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaa 410  Q
    |||| |||||| |||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33934421 ccctataaattgggcaatttttttatattttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaa 33934500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 231 - 455
Target Start/End: Complemental strand, 42014048 - 42013824
Alignment:
Q  231 gggcggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaannnnnnnnnnnnnnnngtgtaaatccctatgaatttcttatataaac 330  Q
    ||||||||||||||||||||||||||||||||| | ||||| | |||||||||                |||||||||||||||||||||||||||||||    
T  42014048 gggcggttctaaggcccggcgaccccgggcacttgtccgggtttcgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaac 42013949  T
Q  331 ccctgtaaattaggcaatttctttacattttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaannnnnnnnnngtccgggctt 430  Q
     ||| |||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||          | ||||||||    
T  42013948 tcctataaattgggcaatttctttatattttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgaaattttttttttgcccgggctt 42013849  T
Q  431 tacaatattcctggctccgccactg 455  Q
    ||||||||| | |||||||||||||    
T  42013848 tacaatatttcaggctccgccactg 42013824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 301 - 410
Target Start/End: Complemental strand, 26021502 - 26021392
Alignment:
Q  301 tgtaaatccctatgaatttcttatataaacccctgtaaattaggcaatttctttacatttttt-attatttgcttgcaatttcttatgtacgccctataa 399  Q
    |||||||||||||||||||||||||||||||||| |||||| || |||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  26021502 tgtaaatccctatgaatttcttatataaacccctataaattgggtaatttctttacatttttttattatttgcttgcaatttcttatgtacgccctataa 26021403  T
Q  400 atgtgttgcaa 410  Q
    |||||||||||    
T  26021402 atgtgttgcaa 26021392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 303 - 389
Target Start/End: Complemental strand, 24065377 - 24065291
Alignment:
Q  303 taaatccctatgaatttcttatataaacccctgtaaattaggcaatttctttacattttttattatttgcttgcaatttcttatgta 389  Q
    |||||| ||||||||||||||||||||| ||| |||||| |||||||||||||  ||||||||||||||||||||||||||||||||    
T  24065377 taaatctctatgaatttcttatataaactcctataaattgggcaatttctttagcttttttattatttgcttgcaatttcttatgta 24065291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 311 - 410
Target Start/End: Complemental strand, 19334879 - 19334779
Alignment:
Q  311 tatgaatttcttatataaacccctgtaaattaggcaatttctttacatt-ttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgca 409  Q
    ||||||||| ||||||||||| || |||||||| ||||||||||| ||| ||||||||||||||| ||||||||||||||  |||||||||| |||||||    
T  19334879 tatgaattttttatataaacctctataaattagacaatttctttaaattgttttattatttgcttacaatttcttatgtaacccctataaatatgttgca 19334780  T
Q  410 a 410  Q
    |    
T  19334779 a 19334779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 300 - 389
Target Start/End: Complemental strand, 21488173 - 21488084
Alignment:
Q  300 gtgtaaatccctatgaatttcttatataaacccctgtaaattaggcaatttctttacatttttt-attatttgcttgcaatttcttatgta 389  Q
    |||||||| ||| ||||||||||||| |||||||  |||||| | ||||||||||| ||||||| |||||| |||||||||||||||||||    
T  21488173 gtgtaaattcctttgaatttcttatagaaaccccgataaattggacaatttctttagatttttttattatt-gcttgcaatttcttatgta 21488084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 313 - 410
Target Start/End: Complemental strand, 2271289 - 2271197
Alignment:
Q  313 tgaatttcttatataaacccctgtaaattaggcaatttctttacattttttattatttgcttgcaatttcttatgt--acgccctataaatgtgttgcaa 410  Q
    |||||||||||||||||||||| || |||||| |||||||||| ||||||||       ||| |||||||||||||  || |||||||||||||||||||    
T  2271289 tgaatttcttatataaacccctatatattaggtaatttctttagatttttta-------cttacaatttcttatgtaaaccccctataaatgtgttgcaa 2271197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 301 - 355
Target Start/End: Complemental strand, 16523212 - 16523158
Alignment:
Q  301 tgtaaatccctatgaatttcttatataaacccctgtaaattaggcaatttcttta 355  Q
    ||||||||||||||||||||||||||||| |||| |||||| ||||| |||||||    
T  16523212 tgtaaatccctatgaatttcttatataaatccctataaattgggcaacttcttta 16523158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 301 - 410
Target Start/End: Complemental strand, 10112153 - 10112042
Alignment:
Q  301 tgtaaatccctatgaatttcttatataaacccctgtaaattaggcaatttctttacatttttt-attatttgcttgcaatttcttatgt-acgccctata 398  Q
    ||||||| ||| | |||||||||||||||| | | |||||| | ||||||||||  ||||||| |||||||  |||||||||||||||| |  |||||||    
T  10112153 tgtaaattcctcttaatttcttatataaactcttataaattggacaatttcttttaattttttgattatttatttgcaatttcttatgtaaacccctata 10112054  T
Q  399 aatgtgttgcaa 410  Q
    ||| ||||||||    
T  10112053 aatatgttgcaa 10112042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 231 - 283
Target Start/End: Complemental strand, 26021573 - 26021520
Alignment:
Q  231 gggcggttctaaggccc-ggcgaccccgggcactcgcccgggctccgggccaaa 283  Q
    ||||||||||||||||| || ||||||||||||| |||||||||||| ||||||    
T  26021573 gggcggttctaaggccccggtgaccccgggcactagcccgggctccgtgccaaa 26021520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 313 - 389
Target Start/End: Original strand, 43282885 - 43282962
Alignment:
Q  313 tgaatttcttatataaacccctgtaaattaggcaatttctttacat-tttttattatttgcttgcaatttcttatgta 389  Q
    ||||||| ||||||||| |||| |||||| || |||||| ||| |  |||||||||||||||||| ||||||||||||    
T  43282885 tgaatttattatataaatccctataaattgggtaatttcattagaaatttttattatttgcttgctatttcttatgta 43282962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 358 - 389
Target Start/End: Original strand, 34697469 - 34697500
Alignment:
Q  358 ttttttattatttgcttgcaatttcttatgta 389  Q
    ||||||||||||||||||||||||||||||||    
T  34697469 ttttttattatttgcttgcaatttcttatgta 34697500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 130; Significance: 4e-67; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 231 - 458
Target Start/End: Complemental strand, 34707292 - 34707065
Alignment:
Q  231 gggcggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaannnnnnnnnnnnnnnngtgtaaatccctatgaatttcttatataaac 330  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||                |||||||||||||||||||||||||||||||    
T  34707292 gggcggttctaagacccggcgaccccgggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaac 34707193  T
Q  331 ccctgtaaattaggcaatttctttacattttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaannnnnnnnnngtccgggctt 430  Q
    |||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          | ||||||||    
T  34707192 ccctataaattgggcaatttctttacattttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaattttttttttgcccgggctt 34707093  T
Q  431 tacaatattcctggctccgccactgcta 458  Q
    || |||||||||||||||||||||||||    
T  34707092 tagaatattcctggctccgccactgcta 34707065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 231 - 455
Target Start/End: Original strand, 44164695 - 44164919
Alignment:
Q  231 gggcggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaannnnnnnnnnnnnnnngtgtaaatccctatgaatttcttatataaac 330  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||                ||||||||  |||||||||||||||||||||    
T  44164695 gggcggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatttctatgaatttcttatataaac 44164794  T
Q  331 ccctgtaaattaggcaatttctttacattttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaannnnnnnnnngtccgggctt 430  Q
    |||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          | |||| |||    
T  44164795 ccctataaattgggcaatttctttacattttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaatttttttttgcccggactt 44164894  T
Q  431 tacaatattcctggctccgccactg 455  Q
    || ||||||||||||||||||||||    
T  44164895 tagaatattcctggctccgccactg 44164919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 231 - 455
Target Start/End: Complemental strand, 10576849 - 10576625
Alignment:
Q  231 gggcggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaannnnnnnnnnnnnnnngtgtaaatccctatgaatttcttatataaac 330  Q
    |||||||||||||| ||||||||||||||||||| ||||||||||||||||||                |||||||||||||||||||||||||||||||    
T  10576849 gggcggttctaaggtccggcgaccccgggcactcacccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaac 10576750  T
Q  331 ccctgtaaattaggcaatttctttacattttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaannnnnnnnnngtccgggctt 430  Q
    |||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||           |||| ||||    
T  10576749 ccctataaattgggcaatttctttacattttttattatttgcttgcaatttcttatgtacgccctataaatgtattgcaaatttttttttatccgagctt 10576650  T
Q  431 tacaatattcctggctccgccactg 455  Q
    ||||||||||||| |||||||||||    
T  10576649 tacaatattcctgactccgccactg 10576625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 231 - 399
Target Start/End: Complemental strand, 34259694 - 34259526
Alignment:
Q  231 gggcggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaannnnnnnnnnnnnnnngtgtaaatccctatgaatttcttatataaac 330  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||                 |||||||||||||||||||||||||||||||    
T  34259694 gggcggttctaaggcccggcgactccgggcactcgcccgggctccgggccaatttttttgcaatttcttgtgtaaatccctatgaatttcttatataaac 34259595  T
Q  331 ccctgtaaattaggcaatttctttacattttttattatttgcttgcaatttcttatgtacgccctataa 399  Q
    |||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34259594 ccctataaattgggcaatttctttacattttttattatttgcttgcaatttcttatgtacgccctataa 34259526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 231 - 455
Target Start/End: Original strand, 29555891 - 29556115
Alignment:
Q  231 gggcggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaannnnnnnnnnnnnnnngtgtaaatccctatgaatttcttatataaac 330  Q
    ||||||||||| ||||| ||||||| |||||||||||||| |||||||||||                 |||||||| ||||||||||||||||||||||    
T  29555891 gggcggttctatggcccagcgaccctgggcactcgcccggcctccgggccaattttttgacaatttcttgtgtaaattcctatgaatttcttatataaac 29555990  T
Q  331 ccctgtaaattaggcaatttctttacattttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaannnnnnnnnngtccgggctt 430  Q
    |||| |||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          | | ||||||    
T  29555991 ccctataaattggacaatttctttacattttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaatttttttttgcctgggctt 29556090  T
Q  431 tacaatattcctggctccgccactg 455  Q
    |||||||||||||||||||||||||    
T  29556091 tacaatattcctggctccgccactg 29556115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 300 - 454
Target Start/End: Original strand, 32876551 - 32876705
Alignment:
Q  300 gtgtaaatccctatgaatttcttatataaacccctgtaaattaggcaatttctttacattttttattatttgcttgcaatttcttatgtacgccctataa 399  Q
    ||||| ||||||||||||||||||||||||||||| |||||| | |||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  32876551 gtgtagatccctatgaatttcttatataaacccctataaattggacaatttctttacattttttattatttgcttgcaatttcttatgtacgctctataa 32876650  T
Q  400 atgtgttgcaannnnnnnnnngtccgggctttacaatattcctggctccgccact 454  Q
    |||||||||||          | ||||||||||||||||||||||||||||||||    
T  32876651 atgtgttgcaaatttttttttgcccgggctttacaatattcctggctccgccact 32876705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 231 - 455
Target Start/End: Original strand, 29238095 - 29238319
Alignment:
Q  231 gggcggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaannnnnnnnnnnnnnnngtgtaaatccctatgaatttcttatataaac 330  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||                 |||||||||||||||||||||||||||||||    
T  29238095 gggcggttctaaggcccggcaaccccgggcactcgcccgggctccgggccaatttttttgcaatttcttgtgtaaatccctatgaatttcttatataaac 29238194  T
Q  331 ccctgtaaattaggcaatttctttacattttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaannnnnnnnnngtccgggctt 430  Q
    ||||  ||||| |  ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||          | |||| |||    
T  29238195 ccctaaaaattggaaaatttctttacattttttattatttgcttacaatttcttatgtaggccctataaatgtgttgcaaatttttttttgcccggactt 29238294  T
Q  431 tacaatattcctggctccgccactg 455  Q
    ||||||||||||| |||||||||||    
T  29238295 tacaatattcctgactccgccactg 29238319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 300 - 455
Target Start/End: Original strand, 24320460 - 24320614
Alignment:
Q  300 gtgtaaatccctatgaatttcttatataaacccctgtaaattaggcaatttctttacattttttattatttgcttgcaatttcttatgtacgccctataa 399  Q
    |||||||| |||| ||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24320460 gtgtaaattcctacgaatttcttatataaacccctataaattgggcaatttctttacattttttattatttgcttgcaatttcttatgtacgccctataa 24320559  T
Q  400 atgtgttgcaannnnnnnnnngtccgggctttacaatattcctggctccgccactg 455  Q
    |||||||||||          | ||||||||||||||||||||| |||||||||||    
T  24320560 atgtgttgcaa-aatttttttgcccgggctttacaatattcctgactccgccactg 24320614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 231 - 392
Target Start/End: Original strand, 29981065 - 29981226
Alignment:
Q  231 gggcggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaannnnnnnnnnnnnnnngtgtaaatccctatgaatttcttatataaac 330  Q
    ||||||||||||| |||||||||| |||||||||||||||||||||||||||                 |||||||||||||||||||||||||||||||    
T  29981065 gggcggttctaagacccggcgacctcgggcactcgcccgggctccgggccaattcttttgcaatttcttgtgtaaatccctatgaatttcttatataaac 29981164  T
Q  331 ccctgtaaattaggcaatttctttacattttttattatttgcttgcaatttcttatgtacgc 392  Q
      || |||||| | ||||||||||| ||||||||||||||||||||||||||||||||||||    
T  29981165 ttctataaattggacaatttctttatattttttattatttgcttgcaatttcttatgtacgc 29981226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 301 - 410
Target Start/End: Original strand, 17303136 - 17303248
Alignment:
Q  301 tgtaaatccctatgaatttcttatataaacccctgtaaattaggcaatttctttaca--ttttttattatttgcttgcaatttcttatgtacgcc-ctat 397  Q
    ||||||| |||||||||||||||||||||||| |||||||| ||||||||||||| |  ||||||||||||||||||||||||||||||||  || ||||    
T  17303136 tgtaaattcctatgaatttcttatataaacccttgtaaattgggcaatttctttagattttttttattatttgcttgcaatttcttatgtaaaccactat 17303235  T
Q  398 aaatgtgttgcaa 410  Q
    |||||||||||||    
T  17303236 aaatgtgttgcaa 17303248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 301 - 410
Target Start/End: Original strand, 33057679 - 33057789
Alignment:
Q  301 tgtaaatccctatgaatttcttatataaacccctgtaaattaggcaatttctttacatttt-ttattatttgcttgcaatttcttatgtacgccctataa 399  Q
    |||||||||||||||||||||||||||| ||||| ||||||   ||||||||||| ||||| ||||||||||||||||||||||||||||   |||||||    
T  33057679 tgtaaatccctatgaatttcttatataatcccctataaattgaacaatttctttagatttttttattatttgcttgcaatttcttatgtaaatcctataa 33057778  T
Q  400 atgtgttgcaa 410  Q
    |||||||||||    
T  33057779 atgtgttgcaa 33057789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 301 - 454
Target Start/End: Original strand, 19334582 - 19334736
Alignment:
Q  301 tgtaaatccctatgaatttcttatataaacccctgtaaattaggcaatttctttaca--ttttttattatttgcttgcaatttcttatgtacgccctata 398  Q
    ||||||| |||||||||||||||||||||||||| |||||| | ||||||||||| |  ||||||||||||||||||||||||||||| ||  |||||||    
T  19334582 tgtaaatacctatgaatttcttatataaacccctataaattggacaatttctttagattttttttattatttgcttgcaatttcttatataaaccctata 19334681  T
Q  399 aatgtgttgcaannnnnnnnnngtccgggctttacaatattcctggctccgccact 454  Q
    ||| ||||||||          | ||||||||||||||| ||||||||||||||||    
T  19334682 aatttgttgcaa-tatttttttgcccgggctttacaatagtcctggctccgccact 19334736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 301 - 410
Target Start/End: Complemental strand, 10334284 - 10334173
Alignment:
Q  301 tgtaaatccctatgaatttcttatataaacccctgtaaattaggcaatttctttacat-tttttattatttgcttgcaatttcttatgt-acgccctata 398  Q
    ||||||| ||| |||||||||||||||||| | | |||||| ||||||||||||| || |||||| ||||||||||||||||||||||| |  |||||||    
T  10334284 tgtaaattcctctgaatttcttatataaactcttataaattgggcaatttctttagatatttttaatatttgcttgcaatttcttatgtaaacccctata 10334185  T
Q  399 aatgtgttgcaa 410  Q
    ||||||||||||    
T  10334184 aatgtgttgcaa 10334173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 304 - 410
Target Start/End: Original strand, 26284404 - 26284510
Alignment:
Q  304 aaatccctatgaatttcttatataaacccctgtaaattaggcaatttctttacattttttattatttgcttgcaatttcttatgt-acgccctataaatg 402  Q
    |||||||| ||||||||||||| ||||   | |||||| | ||||||||||| |||||||||||||| ||||||||||||| ||| |  |||||||||||    
T  26284404 aaatccctctgaatttcttata-aaactagtataaattggacaatttctttagattttttattattttcttgcaatttcttttgtaaacccctataaatg 26284502  T
Q  403 tgttgcaa 410  Q
    ||||||||    
T  26284503 tgttgcaa 26284510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 313 - 384
Target Start/End: Complemental strand, 9770753 - 9770682
Alignment:
Q  313 tgaatttcttatataaacccctgtaaattaggcaatttctttacattttttattatttgcttgcaatttctt 384  Q
    ||||||||||||||||||| || | |||| | ||||||||||| | |||| |||||||||||||||||||||    
T  9770753 tgaatttcttatataaaccactatgaattggacaatttctttagacttttgattatttgcttgcaatttctt 9770682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 301 - 363
Target Start/End: Complemental strand, 15017879 - 15017817
Alignment:
Q  301 tgtaaatccctatgaatttcttatataaacccctgtaaattaggcaatttctttacatttttt 363  Q
    ||||||| ||| |||||||||||||||||| | | |||||| | ||||||||||| |||||||    
T  15017879 tgtaaattcctctgaatttcttatataaacgcgtataaattggacaatttctttagatttttt 15017817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 427 - 455
Target Start/End: Complemental strand, 34259512 - 34259484
Alignment:
Q  427 gctttacaatattcctggctccgccactg 455  Q
    |||||||||||||||||||||||||||||    
T  34259512 gctttacaatattcctggctccgccactg 34259484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 128; Significance: 7e-66; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 128; E-Value: 7e-66
Query Start/End: Original strand, 231 - 452
Target Start/End: Original strand, 42769710 - 42769931
Alignment:
Q  231 gggcggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaannnnnnnnnnnnnnnngtgtaaatccctatgaatttcttatataaac 330  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||                |||||||||||||||||||||||||||||||    
T  42769710 gggcggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaac 42769809  T
Q  331 ccctgtaaattaggcaatttctttacattttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaannnnnnnnnngtccgggctt 430  Q
    |||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||          | ||||||||    
T  42769810 ccctataaattgggcaatttctttacattttttattatttgcttgcaatttcttatgtatgccctataaatgtgttgcaaatttttttttgcccgggctt 42769909  T
Q  431 tacaatattcctggctccgcca 452  Q
    ||||||||||||||||||||||    
T  42769910 tacaatattcctggctccgcca 42769931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 123; E-Value: 7e-63
Query Start/End: Original strand, 231 - 455
Target Start/End: Original strand, 14941996 - 14942220
Alignment:
Q  231 gggcggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaannnnnnnnnnnnnnnngtgtaaatccctatgaatttcttatataaac 330  Q
    ||||||||||||||| |||||||||||| ||||||||||||||||||||||||                |||||||||||||||||||||||||||||||    
T  14941996 gggcggttctaaggctcggcgaccccggacactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaac 14942095  T
Q  331 ccctgtaaattaggcaatttctttacattttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaannnnnnnnnngtccgggctt 430  Q
    |||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||          | ||||||||    
T  14942096 ccctataaattgggcaatttctttacattttttattatttgcttgcaatttcttatgtacgccttataaatgtgttgcaaatttttttttgcccgggctt 14942195  T
Q  431 tacaatattcctggctccgccactg 455  Q
    |||||||||||||||||||||||||    
T  14942196 tacaatattcctggctccgccactg 14942220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 231 - 457
Target Start/End: Original strand, 14186390 - 14186616
Alignment:
Q  231 gggcggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaannnnnnnnnnnnnnnngtgtaaatccctatgaatttcttatataaac 330  Q
    |||||||||||||||||||||||||| |||||||||||| |||||||||||||                |||||||||||||||||||||||||||||||    
T  14186390 gggcggttctaaggcccggcgaccccaggcactcgcccgagctccgggccaaattttttgtaatttcttgtgtaaatccctatgaatttcttatataaac 14186489  T
Q  331 ccctgtaaattaggcaatttctttacattttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaannnnnnnnnngtccgggctt 430  Q
    |||| |||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||          | ||| ||||    
T  14186490 ccctataaattgggcaatttctttacactttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaatttttttttgcccgagctt 14186589  T
Q  431 tacaatattcctggctccgccactgct 457  Q
    |||||||||||||||||||||||||||    
T  14186590 tacaatattcctggctccgccactgct 14186616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 231 - 456
Target Start/End: Complemental strand, 19181724 - 19181499
Alignment:
Q  231 gggcggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaannnnnnnnnnnnnnnngtgtaaatccctatgaatttcttatataaac 330  Q
    |||||||||||||||||||||||||||| |||||||| |||||  ||||||||                |||||||| ||||||||||||||||||||||    
T  19181724 gggcggttctaaggcccggcgaccccggacactcgcctgggctatgggccaaattttttgcaatttcttgtgtaaattcctatgaatttcttatataaac 19181625  T
Q  331 ccctgtaaattaggcaatttctttacattttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaannnnnnnnnngtccgggctt 430  Q
    |||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||          ||||||||||    
T  19181624 ccctataaattgggcaatttctttacattttttattatttgcttgcaatttcttatgtatgccctataaatgtgttgcaaatttttttttgtccgggctt 19181525  T
Q  431 tacaatattcctggctccgccactgc 456  Q
    ||||||||||||||||||||||||||    
T  19181524 tacaatattcctggctccgccactgc 19181499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 231 - 410
Target Start/End: Complemental strand, 29846618 - 29846439
Alignment:
Q  231 gggcggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaannnnnnnnnnnnnnnngtgtaaatccctatgaatttcttatataaac 330  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||                |||||||||||||||||||||||||||||||    
T  29846618 gggcggttctaaggcccgacgaccccgggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaac 29846519  T
Q  331 ccctgtaaattaggcaatttctttacattttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaa 410  Q
    |||| |||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29846518 ccctataaattggacaatttctttacattttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaa 29846439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 231 - 452
Target Start/End: Original strand, 40277240 - 40277461
Alignment:
Q  231 gggcggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaannnnnnnnnnnnnnnngtgtaaatccctatgaatttcttatataaac 330  Q
    ||||||||||||||||||||||||||||||||| | |||||||||||||||||                 ||||||||||||| |||||||||||||||     
T  40277240 gggcggttctaaggcccggcgaccccgggcacttgtccgggctccgggccaaattttttgcaattttttatgtaaatccctataaatttcttatataaat 40277339  T
Q  331 ccctgtaaattaggcaatttctttacattttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaannnnnnnnnngtccgggctt 430  Q
    |||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          | ||||||||    
T  40277340 ccctataaattgggcaatttctttacattttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaatttttttttgcccgggctt 40277439  T
Q  431 tacaatattcctggctccgcca 452  Q
    ||||||||||||||||||||||    
T  40277440 tacaatattcctggctccgcca 40277461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 231 - 455
Target Start/End: Complemental strand, 3956748 - 3956523
Alignment:
Q  231 gggcggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaannnnnnnnnnnnnnnngtgtaaatccctatgaatttcttatataaac 330  Q
    ||||||||||| ||||||| ||||||||||||||||||||||||||| |||||                 ||||||||||||||||||| ||||||||||    
T  3956748 gggcggttctatggcccggtgaccccgggcactcgcccgggctccggcccaaaaaattttcaattttttatgtaaatccctatgaatttattatataaac 3956649  T
Q  331 ccctgtaaattaggcaatttcttt-acattttttattatttgcttgcaatttcttatgtacgcc-ctataaatgtgttgcaannnnnnnnnngtccgggc 428  Q
    ||||||||||| | |||||||||| | ||||||||||||||||||||||||||  |||||  || |||||||||||||||||          | ||||||    
T  3956648 ccctgtaaattggacaatttctttaaaattttttattatttgcttgcaatttcaaatgtaaacctctataaatgtgttgcaa-tttttttttgcccgggc 3956550  T
Q  429 tttacaatattcctggctccgccactg 455  Q
    ||||||||| |||||||||||||||||    
T  3956549 tttacaataatcctggctccgccactg 3956523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 303 - 410
Target Start/End: Original strand, 1387312 - 1387420
Alignment:
Q  303 taaatccctatgaatttcttatataaacccctgtaaattaggcaatttctttacattttttattatttgcttgcaatttcttatgtacgccc-tataaat 401  Q
    ||||||||||||||||||||| |||||||||| |||||| || |||||||||| |||||||||||||||||||||||||||||||||  ||| || ||||    
T  1387312 taaatccctatgaatttcttagataaacccctataaattgggtaatttctttagattttttattatttgcttgcaatttcttatgtaaacccttacaaat 1387411  T
Q  402 gtgttgcaa 410  Q
    |||||||||    
T  1387412 gtgttgcaa 1387420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 301 - 410
Target Start/End: Original strand, 6318480 - 6318592
Alignment:
Q  301 tgtaaatccctatgaatttcttatataaacccctgtaaattaggcaatttctttaca--ttttttattatttgcttgcaatttcttatgtacg-ccctat 397  Q
    ||||||||||||||||||||||||||||| |||| |||||| ||||||||||||| |  |||||||||||||||||||||||||  ||||| | ||||||    
T  6318480 tgtaaatccctatgaatttcttatataaatccctataaattgggcaatttctttagattttttttattatttgcttgcaatttcaaatgtaagcccctat 6318579  T
Q  398 aaatgtgttgcaa 410  Q
    |||||||||||||    
T  6318580 aaatgtgttgcaa 6318592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 315 - 410
Target Start/End: Original strand, 3597903 - 3597998
Alignment:
Q  315 aatttcttatataaacccctgtaaattaggcaatttctttacattttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaa 410  Q
    |||||||| | |||| |||| |||||| | |||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||    
T  3597903 aatttcttgtgtaaatccctataaattggacaatttctttacattttttattatttacttgcaatttcttacgtacgccctataaatgtattgcaa 3597998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 313 - 410
Target Start/End: Original strand, 14539738 - 14539837
Alignment:
Q  313 tgaatttcttatataaacccctgtaaattaggcaatttctttaca-ttttttattatttgcttgcaatttcttatgtacgc-cctataaatgtgttgcaa 410  Q
    |||||||||||||||||  ||| |||||||||||||||||||| | ||||||||||||| ||||||||||||||| ||  | ||||||||||||||||||    
T  14539738 tgaatttcttatataaattcctataaattaggcaatttctttagatttttttattattttcttgcaatttcttatataaacacctataaatgtgttgcaa 14539837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 231 - 283
Target Start/End: Original strand, 3597842 - 3597894
Alignment:
Q  231 gggcggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaa 283  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  3597842 gggcggttctaaggcccggcgaccccaggcactcgcccgggctccgggccaaa 3597894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 301 - 410
Target Start/End: Complemental strand, 40780162 - 40780050
Alignment:
Q  301 tgtaaatccctatgaatttcttatataaac-ccctgtaaattaggcaatttctttacatttttta-ttatttgcttgcaatttcttatgtacgcc-ctat 397  Q
    ||||||| ||| |||||||||||||||||| |||| |||||| | |||||| |||| |||||||| |||||||||||||||||||||||||  || ||||    
T  40780162 tgtaaattcctctgaatttcttatataaacaccctataaatttgacaatttttttaaattttttaattatttgcttgcaatttcttatgtaaaccgctat 40780063  T
Q  398 aaatgtgttgcaa 410  Q
    |||| ||||||||    
T  40780062 aaatatgttgcaa 40780050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 303 - 410
Target Start/End: Complemental strand, 33009777 - 33009667
Alignment:
Q  303 taaatccctatgaatttcttatataaacccctgtaaattaggcaatttctttacatttt--ttattatttgcttgcaatttcttatgtacgccc-tataa 399  Q
    ||||||||||||||||| ||||||||| || | |||||| | ||||||||||| |||||  |||||||||||||||||||| |||||||  ||| |||||    
T  33009777 taaatccctatgaatttgttatataaatccttataaattggacaatttctttagatttttattattatttgcttgcaattttttatgtaaacccatataa 33009678  T
Q  400 atgtgttgcaa 410  Q
    | |||||||||    
T  33009677 acgtgttgcaa 33009667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 315 - 386
Target Start/End: Complemental strand, 43139839 - 43139766
Alignment:
Q  315 aatttcttatataaacccctgtaaattaggcaatttctttaca--ttttttattatttgcttgcaatttcttat 386  Q
    |||||||||||||||||||| ||||||  |||||||||||| |  |||||||||||||||||||||||||||||    
T  43139839 aatttcttatataaacccctataaattgagcaatttctttagattttttttattatttgcttgcaatttcttat 43139766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 301 - 410
Target Start/End: Original strand, 41674728 - 41674840
Alignment:
Q  301 tgtaaatccctatgaatttcttatataaacccctgtaaattaggcaatttctttacatttttt--attatttgcttgcaatttcttatgt-acgccctat 397  Q
    |||||||| || ||||||| |||||||||||| | |||||| | ||||||||||| |||||||  | ||||||||||||||||||||| | |  ||||||    
T  41674728 tgtaaatctctctgaattttttatataaacccttataaattggacaatttctttagatttttttaactatttgcttgcaatttcttatataaatccctat 41674827  T
Q  398 aaatgtgttgcaa 410  Q
    |||||||||||||    
T  41674828 aaatgtgttgcaa 41674840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 313 - 410
Target Start/End: Original strand, 28321737 - 28321836
Alignment:
Q  313 tgaatttcttatataaacccctgtaaattaggcaatttctttacatttttt-attatttgcttgcaatttcttatgt-acgccctataaatgtgttgcaa 410  Q
    ||||| |||||||||||||| | |||||| ||||||||| ||  ||||||| ||||||||||| ||||||||||| | |  |||||||||||||||||||    
T  28321737 tgaatatcttatataaacccttataaattgggcaatttcattgaattttttgattatttgcttccaatttcttatataaacccctataaatgtgttgcaa 28321836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 315 - 410
Target Start/End: Original strand, 23685406 - 23685503
Alignment:
Q  315 aatttcttatataaacccctgtaaattaggcaatttctttacatttttt-attatttgcttgcaatttcttatgtacgccc-tataaatgtgttgcaa 410  Q
    ||||||||||||||| || | |||||| | |||||| |||| || |||| ||||||||||||||||||||||||||  ||| ||||||| ||||||||    
T  23685406 aatttcttatataaatccttataaatttgacaatttatttatatattttgattatttgcttgcaatttcttatgtaaacccttataaatatgttgcaa 23685503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 231 - 274
Target Start/End: Original strand, 1386114 - 1386157
Alignment:
Q  231 gggcggttctaaggcccggcgaccccgggcactcgcccgggctc 274  Q
    ||||||||||| ||| || |||||||||||||||||||||||||    
T  1386114 gggcggttctatggctcgacgaccccgggcactcgcccgggctc 1386157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 231 - 268
Target Start/End: Original strand, 28321667 - 28321704
Alignment:
Q  231 gggcggttctaaggcccggcgaccccgggcactcgccc 268  Q
    |||||||||||||||||||||| |||||||||| ||||    
T  28321667 gggcggttctaaggcccggcgagcccgggcacttgccc 28321704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 315 - 386
Target Start/End: Complemental strand, 25665316 - 25665244
Alignment:
Q  315 aatttcttatataaacccctgtaaattaggcaatttctttacatttttt-attatttgcttgcaatttcttat 386  Q
    ||||||||||||||||   | |||||| || ||||||||||  |||||| |||||||||||||||||| ||||    
T  25665316 aatttcttatataaacatttataaattgggtaatttctttaagttttttgattatttgcttgcaattttttat 25665244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 424 - 452
Target Start/End: Complemental strand, 29846424 - 29846396
Alignment:
Q  424 cgggctttacaatattcctggctccgcca 452  Q
    |||||||||||||||||||||||||||||    
T  29846424 cgggctttacaatattcctggctccgcca 29846396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 328 - 410
Target Start/End: Complemental strand, 32486323 - 32486239
Alignment:
Q  328 aacccctgtaaattaggcaatttctttacatttttta-ttatttgcttgcaatttcttatgtacgc-cctataaatgtgttgcaa 410  Q
    ||||||| |||||| || ||||| || | |||||||| |||||||||||||||||||||| ||  | | ||||||||||||||||    
T  32486323 aacccctataaattgggtaattttttaagattttttaattatttgcttgcaatttcttatataaacacttataaatgtgttgcaa 32486239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 126; Significance: 1e-64; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 231 - 462
Target Start/End: Original strand, 37168985 - 37169216
Alignment:
Q  231 gggcggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaannnnnnnnnnnnnnnngtgtaaatccctatgaatttcttatataaac 330  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||                |||||||||||||||||||||||||||||||    
T  37168985 gggcggttctaaggcccggcgaccccgggcacttgcccgggctccgggccaaattttttgcaattttttgtgtaaatccctatgaatttcttatataaac 37169084  T
Q  331 ccctgtaaattaggcaatttctttacattttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaannnnnnnnnngtccgggctt 430  Q
    |||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||          | ||||||||    
T  37169085 ccctataaattgggcaatttctttacattttttattatttgcttgcaatttcttatgtacgccctataaatgtgtggcaaatttttttttgcccgggctt 37169184  T
Q  431 tacaatattcctggctccgccactgctaacat 462  Q
    ||||||||||||||||| ||||||||| ||||    
T  37169185 tacaatattcctggctctgccactgctcacat 37169216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 123; E-Value: 7e-63
Query Start/End: Original strand, 231 - 455
Target Start/End: Complemental strand, 23218661 - 23218437
Alignment:
Q  231 gggcggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaannnnnnnnnnnnnnnngtgtaaatccctatgaatttcttatataaac 330  Q
    |||||||||||||||||||||| |||||||||||||||||| |||||||||||                |||||||||||||||||||||||||||||||    
T  23218661 gggcggttctaaggcccggcgatcccgggcactcgcccgggttccgggccaaagtttttgcaatttcttgtgtaaatccctatgaatttcttatataaac 23218562  T
Q  331 ccctgtaaattaggcaatttctttacattttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaannnnnnnnnngtccgggctt 430  Q
    |||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||          | ||||||||    
T  23218561 ccctataaattgggcaatttctttacattttttattatttgcttgcaatttcttatgtactccctataaatgtgttgcaaatttttttttgcccgggctt 23218462  T
Q  431 tacaatattcctggctccgccactg 455  Q
    |||||||||||||||||||||||||    
T  23218461 tacaatattcctggctccgccactg 23218437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 232 - 455
Target Start/End: Complemental strand, 38397773 - 38397550
Alignment:
Q  232 ggcggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaannnnnnnnnnnnnnnngtgtaaatccctatgaatttcttatataaacc 331  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||                ||||||||||||||||||||||||||||||||    
T  38397773 ggcggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaacc 38397674  T
Q  332 cctgtaaattaggcaatttctttacattttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaannnnnnnnnngtccgggcttt 431  Q
    ||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||          | || ||||||    
T  38397673 cctataaattgggcaatttctttacattttttattatttgcttgcaatttcttatgtacgtcctataaatgtgttgcaatttgttttttgcccaggcttt 38397574  T
Q  432 acaatattcctggctccgccactg 455  Q
    | ||||||||||||||||||||||    
T  38397573 ataatattcctggctccgccactg 38397550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 231 - 449
Target Start/End: Original strand, 6257362 - 6257580
Alignment:
Q  231 gggcggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaannnnnnnnnnnnnnnngtgtaaatccctatgaatttcttatataaac 330  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||                |||||||||||||||||||||||||| ||||    
T  6257362 gggcggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatacaaac 6257461  T
Q  331 ccctgtaaattaggcaatttctttacattttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaannnnnnnnnngtccgggctt 430  Q
    |||| |||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||          | |||| |||    
T  6257462 ccctataaattgggcaatttctttacattttttattatttgcttgcaatttcttatatacgccctataaatgtgttgcaaaattttttttgcccggactt 6257561  T
Q  431 tacaatattcctggctccg 449  Q
    |||||||||||||||||||    
T  6257562 tacaatattcctggctccg 6257580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 231 - 410
Target Start/End: Original strand, 16618522 - 16618701
Alignment:
Q  231 gggcggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaannnnnnnnnnnnnnnngtgtaaatccctatgaatttcttatataaac 330  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||                |||||||||||||||||||||||||||||||    
T  16618522 gggcggttctaaggcccggcgaccccgggcactcgtccgggctccgggccaaattttttacaatttcttgtgtaaatccctatgaatttcttatataaac 16618621  T
Q  331 ccctgtaaattaggcaatttctttacattttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaa 410  Q
     ||| |||||| | |||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16618622 tcctataaattggacaatttttttatattttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaa 16618701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 231 - 451
Target Start/End: Original strand, 39862439 - 39862659
Alignment:
Q  231 gggcggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaannnnnnnnnnnnnnnngtgtaaatccctatgaatttcttatataaac 330  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||                 |||||||| ||||||||||||||||||||||    
T  39862439 gggcggttctaaggcccggcgaccccgggcactcgcccgagctccgggccaatttttttgcaatttcttgtgtaaattcctatgaatttcttatataaac 39862538  T
Q  331 ccctgtaaattaggcaatttctttacattttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaannnnnnnnnngtccgggctt 430  Q
    |||| |||||| ||||||||||||| |||||||||||||||||||||||||||||| ||||||||| |||||||||||||          | || |||||    
T  39862539 ccctataaattgggcaatttctttagattttttattatttgcttgcaatttcttatatacgccctaaaaatgtgttgcaaatttttttttgcccaggctt 39862638  T
Q  431 tacaatattcctggctccgcc 451  Q
    |||||||||||||||||||||    
T  39862639 tacaatattcctggctccgcc 39862659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 231 - 452
Target Start/End: Complemental strand, 15631790 - 15631568
Alignment:
Q  231 gggcggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaannnnnnnnnnnnnnnngtgtaaatccctatgaatttcttatataaac 330  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||                || ||||||||||||||||||||||||||||    
T  15631790 gggcggttctaaggcccggcgaccccgggcactcgcccgggctccaggccaaattttttacaatttcttgtataaatccctatgaatttcttatataaac 15631691  T
Q  331 ccc-tgtaaattaggcaatttctttacattttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaannnnnnnnnngtccgggct 429  Q
    ||| | |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||          | | |||||    
T  15631690 cccctataaattggacaatttctttacattttttattatttgcttgcaatttcttatgtacgccctataaatgcgttgtaaatttttttttgcctgggct 15631591  T
Q  430 ttacaatattcctggctccgcca 452  Q
    |||||||||||||||||||||||    
T  15631590 ttacaatattcctggctccgcca 15631568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 301 - 457
Target Start/End: Complemental strand, 10081251 - 10081094
Alignment:
Q  301 tgtaaatccctatgaatttcttatataaacccctgtaaattaggcaatttctttaca-ttttttattatttgcttgcaatttcttatgtacgc-cctata 398  Q
    |||||||||||||||||||||||||||||||||| |||||| ||||||||||||| | ||||||||||||||||| ||||||||||||||  | ||||||    
T  10081251 tgtaaatccctatgaatttcttatataaacccctataaattgggcaatttctttagatttttttattatttgcttacaatttcttatgtaaactcctata 10081152  T
Q  399 aatgtgttgcaannnnnnnnnngtccgggctttacaatattcctggctccgccactgct 457  Q
    ||||||||||||          | ||||||||||||||| |||||||||||||||||||    
T  10081151 aatgtgttgcaa-tttttttttgcccgggctttacaataatcctggctccgccactgct 10081094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 231 - 410
Target Start/End: Original strand, 8456915 - 8457096
Alignment:
Q  231 gggcggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaannnnnnnnnnnnnnnngtgtaaatccctatgaatttcttatataaac 330  Q
    ||||||||||| ||||||||||||||  ||||||||||||||||||| |||||                 |||||||||||||||||||||||||||| |    
T  8456915 gggcggttctatggcccggcgaccccatgcactcgcccgggctccggcccaaatttttttcaatttcttatgtaaatccctatgaatttcttatataacc 8457014  T
Q  331 ccctgtaaattaggcaatttctttaca-ttttttattatttgcttgcaatttcttatgt-acgccctataaatgtgttgcaa 410  Q
    |||| |||||| ||||||||||||| | ||||||||||||||||||||||||||||||| |  |||||||||| ||||||||    
T  8457015 ccctataaattgggcaatttctttagatttttttattatttgcttgcaatttcttatgtaaacccctataaatatgttgcaa 8457096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 301 - 410
Target Start/End: Original strand, 36769096 - 36769206
Alignment:
Q  301 tgtaaatccctatgaatttcttatataaacccctgtaaattaggcaatttctttacattttttattatttgcttgcaatttcttatgt-acgccctataa 399  Q
    ||||||| ||| ||||||||||||||||||| || | |||||||||||||||||| |||||| ||||||||||||||||||| ||||| |  ||||||||    
T  36769096 tgtaaattcctctgaatttcttatataaacctctatgaattaggcaatttctttagatttttgattatttgcttgcaatttcatatgtaaacccctataa 36769195  T
Q  400 atgtgttgcaa 410  Q
    |||||||||||    
T  36769196 atgtgttgcaa 36769206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 301 - 407
Target Start/End: Original strand, 614414 - 614522
Alignment:
Q  301 tgtaaatccctatgaatttcttatataaacccctgtaaattaggcaatttctttaca-ttttttattatttgcttgcaatttcttatgtacgc-cctata 398  Q
    ||||||| ||| ||||||| ||||||||| |||| |||||| ||||||||||||| | ||||||||||||||||||||||||||||||||  | ||||||    
T  614414 tgtaaattcctctgaattttttatataaatccctataaatttggcaatttctttagatttttttattatttgcttgcaatttcttatgtaaacacctata 614513  T
Q  399 aatgtgttg 407  Q
    |||||||||    
T  614514 aatgtgttg 614522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 304 - 452
Target Start/End: Original strand, 9738008 - 9738156
Alignment:
Q  304 aaatccctatgaatttcttatataaacccctgtaaattaggcaatttctttacatttttt-attatttgcttgcaatttcttatgt-acgccctataaat 401  Q
    |||||||||||||||||||||||||| |||| |||||| | ||||||||||| |||||||  |||||||||||||||||||||||| |  ||||||||||    
T  9738008 aaatccctatgaatttcttatataaatccctataaattggacaatttctttagattttttgtttatttgcttgcaatttcttatgtaaacccctataaat 9738107  T
Q  402 gtgttgcaannnnnnnnnngtccgggctttacaatattcctggctccgcca 452  Q
    | | |||||          ||||||||||||||||| ||||||||||||||    
T  9738108 gcgatgcaa--ttttttttgtccgggctttacaataatcctggctccgcca 9738156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 301 - 410
Target Start/End: Original strand, 25560349 - 25560460
Alignment:
Q  301 tgtaaatccctatgaatttcttatataaacccctgtaaattaggcaatttctttacatt-ttttattatttgcttgcaatttcttatgtacgccc-tata 398  Q
    ||||||||| ||| ||||||||||||||||  || |||||| | ||||||||||| ||| ||||||||||||||||||||||||||||||  ||| ||||    
T  25560349 tgtaaatccttataaatttcttatataaacatctataaattggacaatttctttagattattttattatttgcttgcaatttcttatgtaaacccatata 25560448  T
Q  399 aatgtgttgcaa 410  Q
    ||||||||||||    
T  25560449 aatgtgttgcaa 25560460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 301 - 410
Target Start/End: Complemental strand, 11856401 - 11856290
Alignment:
Q  301 tgtaaatccctatgaatttcttatataaacccctgtaaattaggcaatttctttacatttttt-attatttgcttgcaatttcttatgtacgc-cctata 398  Q
    |||||||| || ||||||||||||||||| | || |||||| ||||||||||||| ||||||| ||||||| ||||||||||||||||||  | ||||||    
T  11856401 tgtaaatcgctctgaatttcttatataaatcactataaattgggcaatttctttagattttttgattatttacttgcaatttcttatgtaaactcctata 11856302  T
Q  399 aatgtgttgcaa 410  Q
    ||| ||||||||    
T  11856301 aatatgttgcaa 11856290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 301 - 410
Target Start/End: Complemental strand, 42119728 - 42119617
Alignment:
Q  301 tgtaaatccctatgaatttcttatataaacccctgtaaattaggcaatttctttaca-ttttttattatttgcttgcaatttcttatgt-acgccctata 398  Q
    ||||||| ||| ||||||||||||||||||| || |||||| | ||||||||||| | |||||||||||||| ||| |||||||||||| |  |||||||    
T  42119728 tgtaaattcctctgaatttcttatataaacctctataaattggacaatttctttagatttttttattatttgtttgtaatttcttatgtaaacccctata 42119629  T
Q  399 aatgtgttgcaa 410  Q
    ||||||||||||    
T  42119628 aatgtgttgcaa 42119617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 313 - 389
Target Start/End: Complemental strand, 6174840 - 6174762
Alignment:
Q  313 tgaatttcttatataaacccc--tgtaaattaggcaatttctttacattttttattatttgcttgcaatttcttatgta 389  Q
    |||||||||||||||||||||  | |||||| | ||||||||||| |||||||||||||||||||||||||| ||||||    
T  6174840 tgaatttcttatataaacccccctataaattggacaatttctttatattttttattatttgcttgcaatttcctatgta 6174762  T

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Target: chr5; HSP #17
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 301 - 381
Target Start/End: Complemental strand, 10115266 - 10115185
Alignment:
Q  301 tgtaaatccctatgaatttcttatataaacccctgtaaattaggcaatttctttacatttttt-attatttgcttgcaattt 381  Q
    ||||||| ||| || ||||||||||||||||||  |||||||| ||||||||||| ||||||| ||||||||||||||||||    
T  10115266 tgtaaattcctctggatttcttatataaaccccaataaattagacaatttctttagattttttaattatttgcttgcaattt 10115185  T

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Target: chr5; HSP #18
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 301 - 410
Target Start/End: Complemental strand, 27916246 - 27916134
Alignment:
Q  301 tgtaaatccctatgaatttcttatataaacccctgtaaattaggcaatttctttaca-ttttttattatttgcttgcaatttcttatgt--acgccctat 397  Q
    ||||||| ||| |||||||||||||||||| ||| ||||||  |||||||| ||| | |||||||||||||| |||||||||||||| |  ||  |||||    
T  27916246 tgtaaattcctctgaatttcttatataaactcctataaattgagcaatttcattagatttttttattatttgtttgcaatttcttatataaacctcctat 27916147  T
Q  398 aaatgtgttgcaa 410  Q
    |||||||||||||    
T  27916146 aaatgtgttgcaa 27916134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 313 - 386
Target Start/End: Original strand, 33271304 - 33271377
Alignment:
Q  313 tgaatttcttatataaacccctgtaaattaggcaatttctttacattttttattatttgcttgcaatttcttat 386  Q
    ||||||||||||||||||| || |||||| | ||||||||||| ||||||||||||||| ||| ||||||||||    
T  33271304 tgaatttcttatataaacctctataaattggacaatttctttatattttttattatttgtttgtaatttcttat 33271377  T

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Target: chr5; HSP #20
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 301 - 450
Target Start/End: Original strand, 29491436 - 29491585
Alignment:
Q  301 tgtaaatccctatgaatttcttatataaacccctgtaaattaggcaatttctttacatttttt-attatttgcttgcaatttcttatgtacgc-cctata 398  Q
    |||||||  ||||||||||||||||||| ||||| |||||| | ||||| ||||| ||||||| |||||||||||||||||||||||| |  | | ||||    
T  29491436 tgtaaatttctatgaatttcttatataa-cccctataaattggacaatt-ctttaaattttttgattatttgcttgcaatttcttatgcaaacacatata 29491533  T
Q  399 aatgtgttgcaannnnnnnnnngtccgggctttacaatattcctggctccgc 450  Q
    ||||||||||||          | ||||||||||||||| ||||||||||||    
T  29491534 aatgtgttgcaattttttttttgcccgggctttacaataatcctggctccgc 29491585  T

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Target: chr5; HSP #21
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 301 - 389
Target Start/End: Original strand, 29790241 - 29790328
Alignment:
Q  301 tgtaaatccctatgaatttcttatataaacccctgtaaattaggcaatttctttacattttttattatttgcttgcaatttcttatgta 389  Q
    ||||||| | |||||||||||||||||||||  | |||||| |||||||||||||  ||||| |||||||||||  |||||||||||||    
T  29790241 tgtaaattcttatgaatttcttatataaacctttataaattgggcaatttcttta-gtttttgattatttgcttttaatttcttatgta 29790328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 301 - 384
Target Start/End: Original strand, 10052522 - 10052606
Alignment:
Q  301 tgtaaatccctatgaatttcttatataaacccctgtaaattaggcaatttcttt-acattttttattatttgcttgcaatttctt 384  Q
    ||||||||||| |||| | |||||||||||  || ||||||||| ||||||||| | |||||  |||||||||||||||||||||    
T  10052522 tgtaaatccctctgaactacttatataaacgtctataaattaggtaatttctttaaaattttagattatttgcttgcaatttctt 10052606  T

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Target: chr5; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 321 - 389
Target Start/End: Original strand, 3341162 - 3341230
Alignment:
Q  321 ttatataaacccctgtaaattaggcaatttctttacattttttattatttgcttgcaatttcttatgta 389  Q
    |||||||| ||||| |||||| || ||||||||||  ||||| ||||||||||| |||||| |||||||    
T  3341162 ttatataatcccctataaattgggaaatttctttagctttttgattatttgctttcaattttttatgta 3341230  T

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Target: chr5; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 231 - 282
Target Start/End: Complemental strand, 10081323 - 10081272
Alignment:
Q  231 gggcggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaa 282  Q
    ||||||||||| |||||||||| ||| ||||||||||||||||| || ||||    
T  10081323 gggcggttctatggcccggcgatcccaggcactcgcccgggctctggcccaa 10081272  T

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Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 343 - 388
Target Start/End: Original strand, 33188406 - 33188451
Alignment:
Q  343 ggcaatttctttacattttttattatttgcttgcaatttcttatgt 388  Q
    |||||||||  || ||||||||||||||||||| ||||||||||||    
T  33188406 ggcaatttcaataaattttttattatttgcttgtaatttcttatgt 33188451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 315 - 363
Target Start/End: Original strand, 19322058 - 19322106
Alignment:
Q  315 aatttcttatataaacccctgtaaattaggcaatttctttacatttttt 363  Q
    |||||||||||||||| ||| |||||| ||||||| ||||| |||||||    
T  19322058 aatttcttatataaactcctataaattgggcaattactttagatttttt 19322106  T

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Target: chr6 (Bit Score: 123; Significance: 7e-63; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 123; E-Value: 7e-63
Query Start/End: Original strand, 231 - 455
Target Start/End: Original strand, 24694603 - 24694827
Alignment:
Q  231 gggcggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaannnnnnnnnnnnnnnngtgtaaatccctatgaatttcttatataaac 330  Q
    |||||||||||||||||||| |||| |||||||||||||||||||||||||||                |||||||||||||||||||||||||||||||    
T  24694603 gggcggttctaaggcccggcaaccctgggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaac 24694702  T
Q  331 ccctgtaaattaggcaatttctttacattttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaannnnnnnnnngtccgggctt 430  Q
     ||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          | ||||||||    
T  24694703 tcctataaattgggcaatttctttacattttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaatttttttttgcccgggctt 24694802  T
Q  431 tacaatattcctggctccgccactg 455  Q
    |||||||||||||||||||||||||    
T  24694803 tacaatattcctggctccgccactg 24694827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 231 - 456
Target Start/End: Original strand, 9231806 - 9232031
Alignment:
Q  231 gggcggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaannnnnnnnnnnnnnnngtgtaaatccctatgaatttcttatataaac 330  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||                 ||||||||| |||||||||||||||||||||    
T  9231806 gggcggttctaaggctcggcgaccccgggcactcgcccgggctccgggccaatttttttgcaatttcttgtgtaaatctctatgaatttcttatataaac 9231905  T
Q  331 ccctgtaaattaggcaatttctttacattttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaannnnnnnnnngtccgggctt 430  Q
    |||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||          | ||||||||    
T  9231906 ccctataaattgggcaatttctttacattttttattatttgcttgcaatttcttatgtatgccctataaatgtgttgcaattttttttttgcccgggctt 9232005  T
Q  431 tacaatattcctggctccgccactgc 456  Q
    ||||||||||||||||||||||||||    
T  9232006 tacaatattcctggctccgccactgc 9232031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 300 - 410
Target Start/End: Original strand, 14309819 - 14309929
Alignment:
Q  300 gtgtaaatccctatgaatttcttatataaacccctgtaaattaggcaatttctttacattttttattatttgcttgcaatttcttatgtacgccctataa 399  Q
    |||||||||||||||||||||||||||||| |||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14309819 gtgtaaatccctatgaatttcttatataaatccctataaattgggcaatttctttacattttttattatttgcttgcaatttcttatgtacgccctataa 14309918  T
Q  400 atgtgttgcaa 410  Q
    |||||||||||    
T  14309919 atgtgttgcaa 14309929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 231 - 454
Target Start/End: Complemental strand, 13627716 - 13627494
Alignment:
Q  231 gggcggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaannnnnnnnnnnnnnnngtgtaaatccctatgaatttcttatataaac 330  Q
    ||||||||||||||||||||||||||  ||||||| |||||||||||||||||                |||||||||||||||||||||||||||||||    
T  13627716 gggcggttctaaggcccggcgaccccaagcactcgtccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaac 13627617  T
Q  331 ccctgtaaattaggcaatttctttacattttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaannnnnnnnnngtccgggctt 430  Q
    |||| ||||||  |||||||||||||||||||||||||||||||| | ||||||||||||| ||||||||| ||||||||          | ||||||||    
T  13627616 ccctataaattgagcaatttctttacattttttattatttgcttgtactttcttatgtacgtcctataaatatgttgcaa-aatttttttgcccgggctt 13627518  T
Q  431 tacaatattcctggctccgccact 454  Q
    || |||||||||||||||||||||    
T  13627517 tagaatattcctggctccgccact 13627494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 300 - 381
Target Start/End: Original strand, 1727954 - 1728035
Alignment:
Q  300 gtgtaaatccctatgaatttcttatataaacccctgtaaattaggcaatttctttacattttttattatttgcttgcaattt 381  Q
    ||||||||||||||||||||||||||||||||||| ||||||  ||||||||||||||||||||||||||| ||||||||||    
T  1727954 gtgtaaatccctatgaatttcttatataaacccctataaattgagcaatttctttacattttttattatttccttgcaattt 1728035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 358 - 457
Target Start/End: Complemental strand, 11084659 - 11084560
Alignment:
Q  358 ttttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaannnnnnnnnngtccgggctttacaatattcctggctccgccactgct 457  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||          | |||| ||||||||||||||||||||||||||||||    
T  11084659 ttttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaatttttttttgcccggactttacaatattcctggctccgccactgct 11084560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 301 - 389
Target Start/End: Complemental strand, 34103791 - 34103703
Alignment:
Q  301 tgtaaatccctatgaatttcttatataaacccctgtaaattaggcaatttctttacattttttattatttgcttgcaatttcttatgta 389  Q
    ||||||| ||| |||||||||||||||||||| | |||||| || |||||||||| ||||||||||||||| |||||||||||||||||    
T  34103791 tgtaaattcctctgaatttcttatataaacccgtataaattgggaaatttctttagattttttattatttgtttgcaatttcttatgta 34103703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 313 - 410
Target Start/End: Complemental strand, 27863793 - 27863695
Alignment:
Q  313 tgaatttcttatataaacccctgtaaattaggcaatttctttacattttttattatttgcttgcaatttcttatgtacgc-cctataaatgtgttgcaa 410  Q
    |||||||||||||||||||| | |||||| | ||||||||||| ||||||||||||||| |||||||||||||||||  |  |||||||||||||||||    
T  27863793 tgaatttcttatataaacccttataaattggacaatttctttagattttttattatttgtttgcaatttcttatgtaaacatctataaatgtgttgcaa 27863695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 313 - 410
Target Start/End: Original strand, 28750684 - 28750783
Alignment:
Q  313 tgaatttcttatataaacccctgtaaattaggcaatttctttacatttttt-attatttgcttgcaatttcttatgtacgc-cctataaatgtgttgcaa 410  Q
    |||||||||||||||||||||| |||||| |||||||||||||  |||||| |||||||||||| |||||||||||||  | | ||||||||||||||||    
T  28750684 tgaatttcttatataaacccctataaattgggcaatttctttaatttttttgattatttgcttgtaatttcttatgtaaactcttataaatgtgttgcaa 28750783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 301 - 405
Target Start/End: Original strand, 13103140 - 13103246
Alignment:
Q  301 tgtaaatccctatgaatttcttatataaacccctgtaaattaggcaatttctttacatttttt-attatttgcttgcaatttcttatgtacgc-cctata 398  Q
    ||||||| ||| |||||||||||||||||||  | |||||| ||||||||||||| ||||||| |||||||||||||||||||| |||||  | ||||||    
T  13103140 tgtaaattcctctgaatttcttatataaacctttataaattgggcaatttctttagattttttgattatttgcttgcaatttctaatgtaaacacctata 13103239  T
Q  399 aatgtgt 405  Q
    |||||||    
T  13103240 aatgtgt 13103246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 313 - 410
Target Start/End: Complemental strand, 11279634 - 11279536
Alignment:
Q  313 tgaatttcttatataaacccctgtaaattaggcaatttctttacattttttattatttgcttgcaatttcttatgt-acgccctataaatgtgttgcaa 410  Q
    ||||||| |||||||||  | | |||||| || |||||||||| |||||||||||||||||||||||||||||||| |  | |||||||||||||||||    
T  11279634 tgaattttttatataaattcttataaatttggtaatttctttagattttttattatttgcttgcaatttcttatgtaaatctctataaatgtgttgcaa 11279536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 313 - 389
Target Start/End: Complemental strand, 11212765 - 11212689
Alignment:
Q  313 tgaatttcttatataaacccctgtaaattaggcaatttctttacattttttattatttgcttgcaatttcttatgta 389  Q
    ||||||| || |||||| |||| |||||| ||||||||||||| |||||| |||||||||||| |||||||||||||    
T  11212765 tgaattttttctataaatccctataaattgggcaatttctttagatttttaattatttgcttgtaatttcttatgta 11212689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 300 - 351
Target Start/End: Original strand, 24497595 - 24497646
Alignment:
Q  300 gtgtaaatccctatgaatttcttatataaacccctgtaaattaggcaatttc 351  Q
    |||||||| ||| |||||||||||||||||||||| |||||| |||||||||    
T  24497595 gtgtaaattcctctgaatttcttatataaacccctataaattgggcaatttc 24497646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 231 - 282
Target Start/End: Complemental strand, 11084765 - 11084715
Alignment:
Q  231 gggcggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaa 282  Q
    ||||||||||||||||||| ||||||||||| ||||||||| |||| |||||    
T  11084765 gggcggttctaaggcccggtgaccccgggca-tcgcccgggttccgagccaa 11084715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 346 - 407
Target Start/End: Original strand, 24500767 - 24500830
Alignment:
Q  346 aatttctttacatttt-ttattatttgcttgcaatttcttatgtacgccc-tataaatgtgttg 407  Q
    |||||||||| ||||| ||||||||||||||||||||| ||||||  ||| |||||||||||||    
T  24500767 aatttctttagatttttttattatttgcttgcaatttcatatgtaaacccttataaatgtgttg 24500830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 231 - 277
Target Start/End: Original strand, 34383363 - 34383409
Alignment:
Q  231 gggcggttctaaggcccggcgaccccgggcactcgcccgggctccgg 277  Q
    ||||||||||| |||| |||||||||||| | |||||||||||||||    
T  34383363 gggcggttctatggcctggcgaccccgggtattcgcccgggctccgg 34383409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 300 - 333
Target Start/End: Complemental strand, 11084697 - 11084664
Alignment:
Q  300 gtgtaaatccctatgaatttcttatataaacccc 333  Q
    |||||||| |||||||||||||||||||||||||    
T  11084697 gtgtaaattcctatgaatttcttatataaacccc 11084664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 423 - 455
Target Start/End: Original strand, 1728041 - 1728073
Alignment:
Q  423 ccgggctttacaatattcctggctccgccactg 455  Q
    |||||||||||||||||| ||||||||||||||    
T  1728041 ccgggctttacaatattcttggctccgccactg 1728073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 315 - 355
Target Start/End: Original strand, 8412717 - 8412757
Alignment:
Q  315 aatttcttatataaacccctgtaaattaggcaatttcttta 355  Q
    |||||||||||||||| ||| |||||| |||||||||||||    
T  8412717 aatttcttatataaacgcctataaattgggcaatttcttta 8412757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 120; Significance: 4e-61; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 231 - 455
Target Start/End: Complemental strand, 21853373 - 21853148
Alignment:
Q  231 gggcggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaannnnnnnnnnnnnnnngtgtaaatccctatgaatttcttatataaac 330  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||                ||||||||||||||||||||||||||||||     
T  21853373 gggcggttctaaggcccggcgaccccgggcactcggccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaaa 21853274  T
Q  331 ccctgtaaattaggcaatttctttacattttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaa-nnnnnnnnnngtccgggct 429  Q
    |||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           ||| |||||    
T  21853273 ccctataaattgggcaatttctttacattttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaatttttttttttgtctgggct 21853174  T
Q  430 ttacaatattcctggctccgccactg 455  Q
    ||||||||||||||||||||||||||    
T  21853173 ttacaatattcctggctccgccactg 21853148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 231 - 452
Target Start/End: Original strand, 40845869 - 40846090
Alignment:
Q  231 gggcggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaannnnnnnnnnnnnnnngtgtaaatccctatgaatttcttatataaac 330  Q
    |||||||||||||||||||||||| |||||| ||||||||| |||||| ||||                |||||||||||||||||||||||||||||||    
T  40845869 gggcggttctaaggcccggcgacctcgggcattcgcccgggttccgggtcaaattttttgcaattttttgtgtaaatccctatgaatttcttatataaac 40845968  T
Q  331 ccctgtaaattaggcaatttctttacattttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaannnnnnnnnngtccgggctt 430  Q
    |||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          | ||||||||    
T  40845969 ccctataaattgggcaatttctttacattttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaatttttttttgcccgggctt 40846068  T
Q  431 tacaatattcctggctccgcca 452  Q
    ||||||||||||||||||||||    
T  40846069 tacaatattcctggctccgcca 40846090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 231 - 455
Target Start/End: Original strand, 44994920 - 44995145
Alignment:
Q  231 gggcggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaannnnnnnnnnnnnnnngtgtaaatccctatgaatttcttatataaac 330  Q
    ||||||||||||||||||||||||||||| |||||| ||||||||||||||||                |||||||||||||||||||||||||||||||    
T  44994920 gggcggttctaaggcccggcgaccccgggtactcgctcgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaac 44995019  T
Q  331 ccctg-taaattaggcaatttctttacattttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaannnnnnnnnngtccgggct 429  Q
    ||||  |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          | |||||||    
T  44995020 cccttataaattgggcaatttctttacattttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaatttttttttgcccgggct 44995119  T
Q  430 ttacaatattcctggctccgccactg 455  Q
    |||| |||||||||||||||||||||    
T  44995120 ttactatattcctggctccgccactg 44995145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 231 - 454
Target Start/End: Complemental strand, 13856275 - 13856052
Alignment:
Q  231 gggcggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaannnnnnnnnnnnnnnngtgtaaatccctatgaatttcttatataaac 330  Q
    ||||||||||||||||||||||||| ||||||| |||||||||||||||||||                ||||||||||||||||||||||||||||||     
T  13856275 gggcggttctaaggcccggcgacccagggcacttgcccgggctccgggccaaatttttttcaatttcttgtgtaaatccctatgaatttcttatataaat 13856176  T
Q  331 ccctgtaaattaggcaatttctttacattttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaannnnnnnnnngtccgggctt 430  Q
    |||| |||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          | | ||||||    
T  13856175 ccctataaattggacaatttctttacattttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaattttttttttgcctgggctt 13856076  T
Q  431 tacaatattcctggctccgccact 454  Q
    ||||||||||||||||||||||||    
T  13856075 tacaatattcctggctccgccact 13856052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 231 - 455
Target Start/End: Complemental strand, 5391633 - 5391410
Alignment:
Q  231 gggcggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaannnnnnnnnnnnnnnngtgtaaatccctatgaatttcttatataaac 330  Q
    ||||||||||| ||||||||||||| |||||||||||||||||||| |||||                 |||||||||||||||||||||||||||||||    
T  5391633 gggcggttctatggcccggcgaccctgggcactcgcccgggctccgcgccaattttttgacaatttcttgtgtaaatccctatgaatttcttatataaac 5391534  T
Q  331 ccctgtaaattaggcaatttctttacattttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaannnnnnnnnngtccgggctt 430  Q
    |||| |||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          | ||||||||    
T  5391533 ccctataaattggacaatttctttacattttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaa-attttttttgcccgggctt 5391435  T
Q  431 tacaatattcctggctccgccactg 455  Q
    |||||||||||||||||||||||||    
T  5391434 tacaatattcctggctccgccactg 5391410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 300 - 455
Target Start/End: Original strand, 23467515 - 23467671
Alignment:
Q  300 gtgtaaatccctatgaatttcttatataaacccctgtaaattaggcaatttctttacattttttattatttgcttgcaatttcttatgtacgccctataa 399  Q
    ||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23467515 gtgtaaatccctatgaatttcttatataaacccctataaattgggcaatttctttacattttttattatttgcttgcaatttcttatgtacgccctataa 23467614  T
Q  400 atgtgttgcaannnnnnnnnn-gtccgggctttacaatattcctggctccgccactg 455  Q
    |||||||||||           | || ||||||||||||||||||||||||||||||    
T  23467615 atgtgttgcaaaaaaattttccgcccaggctttacaatattcctggctccgccactg 23467671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 231 - 454
Target Start/End: Original strand, 8950456 - 8950679
Alignment:
Q  231 gggcggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaannnnnnnnnnnnnnnngtgtaaatccctatgaatttcttatataaac 330  Q
    |||||||||||||||| ||||||||||||||||||||||||||| ||||||||                |||||||| |||||||||||||||||||||     
T  8950456 gggcggttctaaggcctggcgaccccgggcactcgcccgggctctgggccaaattttttgcaatttcttgtgtaaattcctatgaatttcttatataaat 8950555  T
Q  331 ccctgtaaattaggcaatttctttacattttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaannnnnnnnnngtccgggctt 430  Q
    |||| |||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||          | |||  |||    
T  8950556 ccctataaattgggcaatttctttacattttttattatttgcttgaaatttcttatgtacgccctataaatatgttgcaaatttttttttgcccgaactt 8950655  T
Q  431 tacaatattcctggctccgccact 454  Q
    ||||||||||||||||||||||||    
T  8950656 tacaatattcctggctccgccact 8950679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 303 - 410
Target Start/End: Complemental strand, 32352951 - 32352844
Alignment:
Q  303 taaatccctatgaatttcttatataaacccctgtaaattaggcaatttctttacattttttattatttgcttgcaatttcttatgtacgccctataaatg 402  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  32352951 taaatccctatgaatttcttatataaacccctataaattaggcaatttctttacattttttattatttgcttacaatttcttatgtacgccctataaatg 32352852  T
Q  403 tgttgcaa 410  Q
    ||||||||    
T  32352851 tgttgcaa 32352844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 301 - 410
Target Start/End: Complemental strand, 20382625 - 20382514
Alignment:
Q  301 tgtaaatccctatgaatttcttatataaacccctgtaaattaggcaatttctttaca-ttttttattatttgcttgcaatttcttatgtacgc-cctata 398  Q
    |||||||||||||||||||||||||||||||||| |||||| || |||||||||| | ||||||||||||||||||||||||||||||||  | ||||||    
T  20382625 tgtaaatccctatgaatttcttatataaacccctataaattgggaaatttctttagatttttttattatttgcttgcaatttcttatgtaaactcctata 20382526  T
Q  399 aatgtgttgcaa 410  Q
    |||| |||||||    
T  20382525 aatgcgttgcaa 20382514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 301 - 410
Target Start/End: Complemental strand, 1781868 - 1781757
Alignment:
Q  301 tgtaaatccctatgaatttcttatataaacccctgtaaattaggcaatttctttacatttttt-attatttgcttgcaatttcttatgt-acgccctata 398  Q
    ||||||||||| |||||||||||||||||||||  |||||| ||||||||||||| ||||||| ||||||||||||||||||| ||||| |  |||||||    
T  1781868 tgtaaatccctctgaatttcttatataaaccccaataaattgggcaatttctttagattttttgattatttgcttgcaatttcgtatgtaaacccctata 1781769  T
Q  399 aatgtgttgcaa 410  Q
    ||||||||||||    
T  1781768 aatgtgttgcaa 1781757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 301 - 410
Target Start/End: Original strand, 43347358 - 43347468
Alignment:
Q  301 tgtaaatccctatgaatttcttatataaacccctgtaaattaggcaatttctttacatttttt-attatttgcttgcaatttcttatgtacgccctataa 399  Q
    ||||||| ||| ||||||||||||||||||||||  ||||| ||||||||||||| ||||||| ||||||||||||||||||||||||||  ||||||||    
T  43347358 tgtaaattcctctgaatttcttatataaacccctacaaattgggcaatttctttagattttttgattatttgcttgcaatttcttatgtaaaccctataa 43347457  T
Q  400 atgtgttgcaa 410  Q
     | ||||||||    
T  43347458 ttatgttgcaa 43347468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 301 - 410
Target Start/End: Original strand, 19649394 - 19649506
Alignment:
Q  301 tgtaaatccctatgaatttcttatataaacccctgtaaattaggcaatttctttacatttttt--attatttgcttgcaatttcttatgt-acgccctat 397  Q
    |||||||| ||||||||||||||||||||||| | |||||| | ||||||||||| |||||||  ||||||||||||||||||||||||| |  ||||||    
T  19649394 tgtaaatcgctatgaatttcttatataaacccttataaattggacaatttctttagattttttggattatttgcttgcaatttcttatgtaattccctat 19649493  T
Q  398 aaatgtgttgcaa 410  Q
    |||||||||||||    
T  19649494 aaatgtgttgcaa 19649506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 300 - 410
Target Start/End: Complemental strand, 3178810 - 3178699
Alignment:
Q  300 gtgtaaatccctatgaatttcttatataaacccctgtaaattaggcaatttctttacattttttattatttgcttgcaatttcttatgtacgc-cctata 398  Q
    |||||||||||||||||||||||||||||| | || |||||| |||||||||||||  |||||| |||||||||||||||||| ||||||  | ||||||    
T  3178810 gtgtaaatccctatgaatttcttatataaatctctataaattgggcaatttctttagttttttttttatttgcttgcaatttcgtatgtaaactcctata 3178711  T
Q  399 aatgtgttgcaa 410  Q
    ||| ||||||||    
T  3178710 aatatgttgcaa 3178699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 301 - 410
Target Start/End: Complemental strand, 36539738 - 36539627
Alignment:
Q  301 tgtaaatccctatgaatttcttatataaacccctgtaaattaggcaatttctttacatttttt-attatttgcttgcaatttcttatgt-acgccctata 398  Q
    ||||||||||||| |||||||||||||| ||||| |||||| ||||||||||||| ||||||| |||||||| |||||||||| ||||| |  |||||||    
T  36539738 tgtaaatccctataaatttcttatataatcccctataaattgggcaatttctttaaattttttgattatttgtttgcaatttcctatgtaaacccctata 36539639  T
Q  399 aatgtgttgcaa 410  Q
    ||||||||||||    
T  36539638 aatgtgttgcaa 36539627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 302 - 406
Target Start/End: Complemental strand, 54547009 - 54546904
Alignment:
Q  302 gtaaatccctatgaatttcttatataaacccctgtaaattaggcaatttctttacattttttattatttgcttgcaatttcttatgt-acgccctataaa 400  Q
    |||||| ||| |||||||||||||||||||||| |||||| | ||||||||||| |||||| ||||||||||| ||||||||||||| |  |||||||||    
T  54547009 gtaaattcctttgaatttcttatataaacccctataaattggacaatttctttagatttttgattatttgcttacaatttcttatgtaaatccctataaa 54546910  T
Q  401 tgtgtt 406  Q
    ||||||    
T  54546909 tgtgtt 54546904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 313 - 410
Target Start/End: Original strand, 10839414 - 10839513
Alignment:
Q  313 tgaatttcttatataaacccctgtaaattaggcaatttctttacatttttt-attatttgcttgcaatttcttatgtacgc-cctataaatgtgttgcaa 410  Q
    ||||||||||||||||||| || |||||| ||||||||||||| ||||||| ||||||||||||||||||||||||||  | |||||| |||||||||||    
T  10839414 tgaatttcttatataaacctctataaattgggcaatttctttagattttttgattatttgcttgcaatttcttatgtaaacacctatacatgtgttgcaa 10839513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 301 - 409
Target Start/End: Complemental strand, 8926872 - 8926762
Alignment:
Q  301 tgtaaatccctatgaatttcttatataaacccctgtaaattaggcaatttctttacatttttt-attatttgcttgcaatttcttatg-tacgccctata 398  Q
    ||||||| ||| ||||||||| |||||||||||| |||||| |||||||||| || ||||||| |||||||||||||||||||||||| ||  || ||||    
T  8926872 tgtaaattcctctgaatttctgatataaacccctataaatttggcaatttctgtagattttttgattatttgcttgcaatttcttatgttaacccttata 8926773  T
Q  399 aatgtgttgca 409  Q
    |||||||||||    
T  8926772 aatgtgttgca 8926762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 315 - 401
Target Start/End: Original strand, 22845398 - 22845484
Alignment:
Q  315 aatttcttatataaacccctgtaaattaggcaatttctttacattttttattatttgcttgcaatttcttatgtacgccctataaat 401  Q
    |||||||||||||||||||| |||||| | ||||||||||| ||||||||||||||||||||||||| |||| ||  ||||||||||    
T  22845398 aatttcttatataaacccctataaatttgacaatttctttagattttttattatttgcttgcaattttttatataaaccctataaat 22845484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 301 - 387
Target Start/End: Original strand, 46685805 - 46685891
Alignment:
Q  301 tgtaaatccctatgaatttcttatataaacccctgtaaattaggcaatttctttacattttttattatttgcttgcaatttcttatg 387  Q
    ||||||||||  | |||||||||||||||| ||| |||||| | ||||||||||| ||||||||||||||| |||||||||||||||    
T  46685805 tgtaaatccccctaaatttcttatataaactcctataaatttgacaatttctttatattttttattatttgtttgcaatttcttatg 46685891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 301 - 410
Target Start/End: Complemental strand, 48206959 - 48206849
Alignment:
Q  301 tgtaaatccctatgaatttcttatataaacccctgtaaattaggcaatttctttacatttttt-attatttgcttgcaatttcttatgtacgc-cctata 398  Q
    ||||||| ||| |||||| ||||||||||||||| |||||| | |||||| |||| ||||||| ||||||| ||||||||||||||||||  | | ||||    
T  48206959 tgtaaattcctctgaatt-cttatataaacccctataaatttgacaatttttttagattttttgattatttacttgcaatttcttatgtaaacacttata 48206861  T
Q  399 aatgtgttgcaa 410  Q
    ||||||||||||    
T  48206860 aatgtgttgcaa 48206849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 309 - 400
Target Start/End: Complemental strand, 47889824 - 47889731
Alignment:
Q  309 cctatgaatttcttatataaacccctgtaaattaggcaatttctttaca-ttttttattatttgcttg-caatttcttatgtacgccctataaa 400  Q
    |||||||||||||||||||||  ||| |||||| ||||||||||||| | ||||||||||||| |||| |||||||| |||||  |||||||||    
T  47889824 cctatgaatttcttatataaattcctataaattgggcaatttctttaaatttttttattatttacttgacaatttctaatgtaaaccctataaa 47889731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 315 - 410
Target Start/End: Complemental strand, 33103835 - 33103739
Alignment:
Q  315 aatttcttatataaacccctgtaaattaggcaatttctttacattttttattatttgcttgcaatttcttatgt-acgccctataaatgtgttgcaa 410  Q
    ||||||||||||||  |||| |||||| |  ||||| |||| ||||||||||||||||||| |||||||||||| |  || ||||||||||||||||    
T  33103835 aatttcttatataagtccctataaattggataatttatttaaattttttattatttgcttgtaatttcttatgtaaatccttataaatgtgttgcaa 33103739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 313 - 410
Target Start/End: Original strand, 6280393 - 6280491
Alignment:
Q  313 tgaatttcttatataaacccctgtaaattaggcaatttctttacattttttattatttgcttgcaatttcttatgtacgcc-ctataaatgtgttgcaa 410  Q
    ||||||||||||||||||| || |||||| | |||||| |||| |||||| || |||||||||| |||| |||||||  ||  ||||||||||||||||    
T  6280393 tgaatttcttatataaacctctataaatttgacaatttatttagatttttgataatttgcttgccattttttatgtaaacctttataaatgtgttgcaa 6280491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 313 - 385
Target Start/End: Complemental strand, 51336303 - 51336231
Alignment:
Q  313 tgaatttcttatataaacccctgtaaattaggcaatttctttacattttttattatttgcttgcaatttctta 385  Q
    ||||||| ||||||||| |  | |||||| | ||||||||||| |||||||||||||| ||||||||||||||    
T  51336303 tgaattttttatataaatctttataaatttgacaatttctttaaattttttattatttacttgcaatttctta 51336231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 231 - 283
Target Start/End: Complemental strand, 20382693 - 20382642
Alignment:
Q  231 gggcggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaa 283  Q
    ||||||||||| |||| |||||||||||||||| ||||||||||||| |||||    
T  20382693 gggcggttctatggcc-ggcgaccccgggcacttgcccgggctccggcccaaa 20382642  T

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Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 231 - 277
Target Start/End: Complemental strand, 36539808 - 36539762
Alignment:
Q  231 gggcggttctaaggcccggcgaccccgggcactcgcccgggctccgg 277  Q
    |||||||||||||||| ||||| | |||||| |||||||||||||||    
T  36539808 gggcggttctaaggcctggcgagctcgggcagtcgcccgggctccgg 36539762  T

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Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 346 - 410
Target Start/End: Original strand, 36826021 - 36826087
Alignment:
Q  346 aatttctttacattttttatt-atttgcttgcaatttcttatgt-acgccctataaatgtgttgcaa 410  Q
    |||||||||| |||||||| | ||||||||||| |||||||||| |  |||||||||||||||||||    
T  36826021 aatttctttaaattttttaatgatttgcttgcagtttcttatgtaaacccctataaatgtgttgcaa 36826087  T

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Target: chr1 (Bit Score: 118; Significance: 6e-60; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 234 - 407
Target Start/End: Complemental strand, 5975161 - 5974988
Alignment:
Q  234 cggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaannnnnnnnnnnnnnnngtgtaaatccctatgaatttcttatataaacccc 333  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||                ||||||||||||| ||||||||||||||||||||    
T  5975161 cggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaatttttttcaatttcttgtgtaaatccctaagaatttcttatataaacccc 5975062  T
Q  334 tgtaaattaggcaatttctttacattttttattatttgcttgcaatttcttatgtacgccctataaatgtgttg 407  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5975061 tataaattaggcaatttctttacattttttattatttgcttgcaatttcttatgtacgccctataaatgtgttg 5974988  T

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Target: chr1; HSP #2
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 231 - 455
Target Start/End: Original strand, 42517246 - 42517474
Alignment:
Q  231 gggcggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaannnnnnnnnnnnnnnngtgtaaatccctatgaatttcttatataaac 330  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||                |||||||||||||||||||||||||||||||    
T  42517246 gggcggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaac 42517345  T
Q  331 ----ccctgtaaattaggcaatttctttacattttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaannnnnnnnnngtccgg 426  Q
        |||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          |  |||    
T  42517346 aaacccctataaattgggcaatttctttacattttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaatttttttttgcacgg 42517445  T
Q  427 gctttacaatattcctggctccgccactg 455  Q
    |||||||||||||||||||||||||||||    
T  42517446 gctttacaatattcctggctccgccactg 42517474  T

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Target: chr1; HSP #3
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 231 - 457
Target Start/End: Original strand, 7742731 - 7742957
Alignment:
Q  231 gggcggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaannnnnnnnnnnnnnnngtgtaaatccctatgaatttcttatataaac 330  Q
    |||||||||||||||||||||||||||||||||||||||||||||| || ||                 |||||||||| ||||||||||||||||||||    
T  7742731 gggcggttctaaggcccggcgaccccgggcactcgcccgggctccgagcaaatttttttgcaatttcttgtgtaaatccttatgaatttcttatataaac 7742830  T
Q  331 ccctgtaaattaggcaatttctttacattttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaannnnnnnnnngtccgggctt 430  Q
    |||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          |  ||| |||    
T  7742831 ccctataaattgggcaatttctttacattttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaatttttttttgctcggactt 7742930  T
Q  431 tacaatattcctggctccgccactgct 457  Q
    |||||||||||||||||||||||||||    
T  7742931 tacaatattcctggctccgccactgct 7742957  T

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Target: chr1; HSP #4
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 300 - 453
Target Start/End: Complemental strand, 3346893 - 3346740
Alignment:
Q  300 gtgtaaatccctatgaatttcttatataaacccctgtaaattaggcaatttctttacattttttattatttgcttgcaatttcttatgtacgccctataa 399  Q
    ||||||||||||||||||||||||||||||||||| |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3346893 gtgtaaatccctatgaatttcttatataaacccctataaattggacaatttctttacattttttattatttgcttgcaatttcttatgtacgccctataa 3346794  T
Q  400 atgtgttgcaannnnnnnnnngtccgggctttacaatattcctggctccgccac 453  Q
    |||||||||||          | |||||||||||||||||||||||||||||||    
T  3346793 atgtgttgcaaatttttttttgcccgggctttacaatattcctggctccgccac 3346740  T

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Target: chr1; HSP #5
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 231 - 410
Target Start/End: Complemental strand, 49902644 - 49902465
Alignment:
Q  231 gggcggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaannnnnnnnnnnnnnnngtgtaaatccctatgaatttcttatataaac 330  Q
    |||||||||||||| |||||||| |||||||||||| ||||||||||||||||                |||||||||||||||||||||||||||||||    
T  49902644 gggcggttctaaggtccggcgactccgggcactcgctcgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaac 49902545  T
Q  331 ccctgtaaattaggcaatttctttacattttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaa 410  Q
    |||| |||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49902544 ccctataaatagggcaatttctttacattttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaa 49902465  T

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Target: chr1; HSP #6
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 231 - 456
Target Start/End: Original strand, 48392358 - 48392581
Alignment:
Q  231 gggcggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaannnnnnnnnnnnnnnngtgtaaatccctatgaatttcttatataaac 330  Q
    |||||||||||||||||||||||| ||||||||||||||||||||| |||||                 ||||||||||||||||||||||||||||||     
T  48392358 gggcggttctaaggcccggcgacctcgggcactcgcccgggctccgagccaatttttttgcaatttcttgtgtaaatccctatgaatttcttatataaat 48392457  T
Q  331 ccctgtaaattaggcaatttctttacattttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaannnnnnnnnngtccgggctt 430  Q
    |||| |||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          | |||| |||    
T  48392458 ccctataaattgggcaatttcattacattttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaa--atttttttgcccggactt 48392555  T
Q  431 tacaatattcctggctccgccactgc 456  Q
    ||||||||||||||||||||||||||    
T  48392556 tacaatattcctggctccgccactgc 48392581  T

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Target: chr1; HSP #7
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 231 - 455
Target Start/End: Complemental strand, 23908451 - 23908237
Alignment:
Q  231 gggcggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaannnnnnnnnnnnnnnngtgtaaatccctatgaatttcttatataaac 330  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||                |||||||| |||||||||||||||||||||     
T  23908451 gggcggttctaaggcccggcgaccccaggcactcgcccgggctccgggccaaatttttt----------gtgtaaattcctatgaatttcttatataaat 23908362  T
Q  331 ccctgtaaattaggcaatttctttacattttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaannnnnnnnnngtccgggctt 430  Q
    |||| |||||| | |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||          | ||||||||    
T  23908361 ccctataaattggacaatttctttatgttttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaattttttttttgcccgggctt 23908262  T
Q  431 tacaatattcctggctccgccactg 455  Q
    |||||||||||||||||||||||||    
T  23908261 tacaatattcctggctccgccactg 23908237  T

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Target: chr1; HSP #8
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 231 - 410
Target Start/End: Complemental strand, 47022878 - 47022699
Alignment:
Q  231 gggcggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaannnnnnnnnnnnnnnngtgtaaatccctatgaatttcttatataaac 330  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||                ||||||||| |||||||||||||||||||||    
T  47022878 gggcggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatctctatgaatttcttatataaac 47022779  T
Q  331 ccctgtaaattaggcaatttctttacattttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaa 410  Q
     ||| |||||||||||||||||||| |||||||||||||| |||| ||||||||||||||||||||||||| ||||||||    
T  47022778 tcctataaattaggcaatttctttatattttttattatttacttgtaatttcttatgtacgccctataaatatgttgcaa 47022699  T

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Target: chr1; HSP #9
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 231 - 455
Target Start/End: Original strand, 10155968 - 10156192
Alignment:
Q  231 gggcggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaannnnnnnnnnnnnnnngtgtaaatccctatgaatttcttatataaac 330  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||                 |||||||| ||||||||||||||||||||||    
T  10155968 gggcggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaatttttttgcaatttcttgtgtaaattcctatgaatttcttatataaac 10156067  T
Q  331 ccctgtaaattaggcaatttctttacattttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaannnnnnnnnngtccgggctt 430  Q
      || |||||| | ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||          | || |||||    
T  10156068 ttctataaattggacaatttctttatattttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaatttttttttgcccaggctt 10156167  T
Q  431 tacaatattcctggctccgccactg 455  Q
    ||||||||| |||||||||||||||    
T  10156168 tacaatatttctggctccgccactg 10156192  T

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Target: chr1; HSP #10
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 300 - 455
Target Start/End: Original strand, 29149569 - 29149724
Alignment:
Q  300 gtgtaaatccctatgaatttcttatataaacccctgtaaattaggcaatttctttacattttttattatttgcttgcaatttcttatgtacgccctataa 399  Q
    ||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||     
T  29149569 gtgtaaatccctatgaatttcttatataaacccctataaattgggcaatttctttacgttttttattatttgcttgcaatttcttatgtacgccctatac 29149668  T
Q  400 atgtgttgcaannnnnnnnnngtccgggctttacaatattcctggctccgccactg 455  Q
    |||||||||||          | |||| ||||||||||||||||||||||||||||    
T  29149669 atgtgttgcaaatttttttttgcccggactttacaatattcctggctccgccactg 29149724  T

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Target: chr1; HSP #11
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 231 - 407
Target Start/End: Complemental strand, 38860027 - 38859849
Alignment:
Q  231 gggcggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaannnnnnnnnnnnnnnngtgtaaatccctatgaatttcttatataaac 330  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||| |||||                 ||||||| ||||||||||||||||||||||    
T  38860027 gggcggttctatggcccggcgaccccgggcactcgcccgggctccggcccaaatttttttcaatttcttatgtaaattcctatgaatttcttatataaac 38859928  T
Q  331 ccctgtaaattaggcaatttctttaca-ttttttattatttgcttgcaatttcttatgt-acgccctataaatgtgttg 407  Q
    |||| |||||| |||||||| |||| | ||||||||||||||||||||||||||||||| |  ||||||||||||||||    
T  38859927 ccctataaattgggcaatttttttagatttttttattatttgcttgcaatttcttatgtaaacccctataaatgtgttg 38859849  T

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Target: chr1; HSP #12
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 301 - 410
Target Start/End: Original strand, 10907670 - 10907781
Alignment:
Q  301 tgtaaatccctatgaatttcttatataaacccctgtaaattaggcaatttctttacatttttt-attatttgcttgcaatttcttatgtacgc-cctata 398  Q
    ||||||| ||| |||||||||||||||||||||| ||||| || ||||||||||| ||||||| ||||||||||||||||||||||||||  | ||||||    
T  10907670 tgtaaattcctctgaatttcttatataaacccctataaatcagacaatttctttagattttttgattatttgcttgcaatttcttatgtagacacctata 10907769  T
Q  399 aatgtgttgcaa 410  Q
    ||||||||||||    
T  10907770 aatgtgttgcaa 10907781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 301 - 410
Target Start/End: Complemental strand, 42456678 - 42456566
Alignment:
Q  301 tgtaaatccctatgaatttcttatataaacccctgtaaattaggcaatttcttt-acattttttattatttgcttgcaatttcttatgt--acgccctat 397  Q
    ||||||| |||||||||||||||||||||||||| |||||| |||||||||||| | |   |||||||| | |||||||||||||||||  |  ||||||    
T  42456678 tgtaaattcctatgaatttcttatataaacccctataaattgggcaatttctttaaaaaaatttattatctacttgcaatttcttatgtaaatcccctat 42456579  T
Q  398 aaatgtgttgcaa 410  Q
    |||||||||||||    
T  42456578 aaatgtgttgcaa 42456566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 314 - 382
Target Start/End: Complemental strand, 5558402 - 5558334
Alignment:
Q  314 gaatttcttatataaacccctgtaaattaggcaatttctttacattttttattatttgcttgcaatttc 382  Q
    ||||||||||||||||||||| |||||| | ||||||||||| |||||| |||||||||||||||||||    
T  5558402 gaatttcttatataaacccctataaattggacaatttctttagatttttgattatttgcttgcaatttc 5558334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 301 - 410
Target Start/End: Complemental strand, 26835444 - 26835333
Alignment:
Q  301 tgtaaatccctatgaatttcttatataaacccctgtaaattaggcaatttctttacatttttt-attatttgcttgcaatttcttatgtacgccc-tata 398  Q
    ||||||| | |||||||||||||||||||| ||| ||||||   |||||| |||| ||||||| |||||||||||||||||||| |||||  ||| ||||    
T  26835444 tgtaaattcatatgaatttcttatataaactcctataaattgaacaatttttttagattttttgattatttgcttgcaatttctcatgtaaacccatata 26835345  T
Q  399 aatgtgttgcaa 410  Q
    ||||||||||||    
T  26835344 aatgtgttgcaa 26835333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 321 - 389
Target Start/End: Original strand, 30252787 - 30252856
Alignment:
Q  321 ttatataaacccctgtaaattaggcaatttctttacatttttt-attatttgcttgcaatttcttatgta 389  Q
    ||||||||| |||| |||||||| ||| ||||||| ||||||| ||||||||||||||||||||||||||    
T  30252787 ttatataaatccctataaattagacaacttctttagattttttgattatttgcttgcaatttcttatgta 30252856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 313 - 389
Target Start/End: Complemental strand, 30745438 - 30745361
Alignment:
Q  313 tgaatttcttatataaacccctgtaaattaggcaatttctttacatttttt-attatttgcttgcaatttcttatgta 389  Q
    |||||||||| |||||| |||| |||||| | ||||||||||| ||||||| ||||||| ||||||||||||||||||    
T  30745438 tgaatttcttttataaatccctataaattggacaatttctttaaattttttgattatttacttgcaatttcttatgta 30745361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 313 - 389
Target Start/End: Complemental strand, 30766889 - 30766812
Alignment:
Q  313 tgaatttcttatataaacccctgtaaattaggcaatttctttacatttttt-attatttgcttgcaatttcttatgta 389  Q
    |||||||||| |||||| |||| |||||| | ||||||||||| ||||||| ||||||| ||||||||||||||||||    
T  30766889 tgaatttcttttataaatccctataaattggacaatttctttaaattttttgattatttacttgcaatttcttatgta 30766812  T

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Target: chr1; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 301 - 410
Target Start/End: Complemental strand, 14796982 - 14796871
Alignment:
Q  301 tgtaaatccctatgaatttcttatataaacccctgtaaattaggcaatttctttacattttt-tattatttgcttgcaatttcttatgtacgccc-tata 398  Q
    ||||||| ||| ||||||||||||||| || | | |||||||||| ||| ||||| ||||||  | ||||||||||||||||||||||||  ||| ||||    
T  14796982 tgtaaattcctctgaatttcttatatacacacttataaattaggccattactttagatttttcgaatatttgcttgcaatttcttatgtaaacccgtata 14796883  T
Q  399 aatgtgttgcaa 410  Q
    ||||| ||||||    
T  14796882 aatgtattgcaa 14796871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 301 - 410
Target Start/End: Complemental strand, 14805856 - 14805745
Alignment:
Q  301 tgtaaatccctatgaatttcttatataaacccctgtaaattaggcaatttctttacattttt-tattatttgcttgcaatttcttatgtacgccc-tata 398  Q
    ||||||| ||| ||||||||||||||| || | | |||||||||| ||| ||||| ||||||  | ||||||||||||||||||||||||  ||| ||||    
T  14805856 tgtaaattcctctgaatttcttatatacacacttataaattaggccattactttagatttttcgaatatttgcttgcaatttcttatgtaaacccgtata 14805757  T
Q  399 aatgtgttgcaa 410  Q
    ||||| ||||||    
T  14805756 aatgtattgcaa 14805745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 301 - 410
Target Start/End: Original strand, 44107410 - 44107521
Alignment:
Q  301 tgtaaatccctatgaatttcttatataaacccctgtaaattaggcaatttctttacatttttt-attatttgcttgcaatttcttatgt-acgccctata 398  Q
    ||||||| ||| ||| ||| |||||||||||||| |||||||   |||||||| | ||||||| ||||||| ||||||||||||||||| |  || ||||    
T  44107410 tgtaaattcctctgatttttttatataaacccctataaattaattaatttcttcagattttttgattatttacttgcaatttcttatgtaaaaccttata 44107509  T
Q  399 aatgtgttgcaa 410  Q
    ||||||||||||    
T  44107510 aatgtgttgcaa 44107521  T

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Target: chr1; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 231 - 283
Target Start/End: Original strand, 29149510 - 29149562
Alignment:
Q  231 gggcggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaa 283  Q
    |||||||| ||||||| ||||||||| |||||||||||||||||||| |||||    
T  29149510 gggcggttttaaggcctggcgaccccaggcactcgcccgggctccggaccaaa 29149562  T

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Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 313 - 385
Target Start/End: Original strand, 26511667 - 26511739
Alignment:
Q  313 tgaatttcttatataaacccctgtaaattaggcaatttctttacattttttattatttgcttgcaatttctta 385  Q
    |||||||||||||||||  ||||||||||    |||||||||| |||||| ||||||| ||| ||||||||||    
T  26511667 tgaatttcttatataaattcctgtaaattgaataatttctttaaatttttgattatttacttacaatttctta 26511739  T

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Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 346 - 388
Target Start/End: Original strand, 8430508 - 8430551
Alignment:
Q  346 aatttctttacatttt-ttattatttgcttgcaatttcttatgt 388  Q
    |||||||||| ||||| |||||||||||||||||||||||||||    
T  8430508 aatttctttaaatttttttattatttgcttgcaatttcttatgt 8430551  T

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Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 231 - 283
Target Start/End: Complemental strand, 3346962 - 3346910
Alignment:
Q  231 gggcggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaa 283  Q
    ||||| |||||||| || |||| |||||||||||||||| ||| |||||||||    
T  3346962 gggcgattctaaggtccagcgatcccgggcactcgcccgagcttcgggccaaa 3346910  T

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Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 301 - 389
Target Start/End: Complemental strand, 13132002 - 13131914
Alignment:
Q  301 tgtaaatccctatgaatttcttatataaacccctgtaaattaggcaatttctttacattttttattatttgcttgcaatttcttatgta 389  Q
    ||||||| ||| | ||||| ||||||||| | || |||||| | |||||||||||  |||||  |||| | ||||||||||||||||||    
T  13132002 tgtaaattcctctaaattttttatataaatcactataaattggacaatttctttagctttttacttatctccttgcaatttcttatgta 13131914  T

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Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 313 - 389
Target Start/End: Complemental strand, 45968761 - 45968685
Alignment:
Q  313 tgaatttcttatataaacccctgtaaattaggcaatttctttacattttttattatttgcttgcaatttcttatgta 389  Q
    ||||||| |||||||| | | | |||||| | |||||| | || |||||| ||||||| ||||||||||||||||||    
T  45968761 tgaattttttatataatctcttataaattggacaatttttatagatttttgattatttacttgcaatttcttatgta 45968685  T

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Target: scaffold0079 (Bit Score: 74; Significance: 1e-33; HSPs: 2)
Name: scaffold0079
Description:

Target: scaffold0079; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 344 - 455
Target Start/End: Complemental strand, 54551 - 54440
Alignment:
Q  344 gcaatttctttacattttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaannnnnnnnnngtccgggctttacaatattcctg 443  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          | ||||||||||||||||| |||    
T  54551 gcaatttctttacattttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaattttttttttgcccgggctttacaatatttctg 54452  T
Q  444 gctccgccactg 455  Q
    ||||||||||||    
T  54451 gctccgccactg 54440  T

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Target: scaffold0079; HSP #2
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 231 - 384
Target Start/End: Complemental strand, 54695 - 54542
Alignment:
Q  231 gggcggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaannnnnnnnnnnnnnnngtgtaaatccctatgaatttcttatataaac 330  Q
    ||||||||||||||||||||||||||||||| ||||||||  ||||||||||                 |||||||| ||||||||||| |||||||||     
T  54695 gggcggttctaaggcccggcgaccccgggcattcgcccggattccgggccaatttttttgcaattttttgtgtaaattcctatgaattttttatataaat 54596  T
Q  331 ccctgtaaattaggcaatttctttacattttttattatttgcttgcaatttctt 384  Q
    |||| |||||| | ||||||||||||||||||||||||||||||||||||||||    
T  54595 ccctataaattggacaatttctttacattttttattatttgcttgcaatttctt 54542  T

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Target: scaffold0045 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 301 - 389
Target Start/End: Original strand, 34474 - 34563
Alignment:
Q  301 tgtaaatccctatgaatttcttatataaacccctgtaaattaggcaatttctttacatttttt-attatttgcttgcaatttcttatgta 389  Q
    ||||||||||| ||||||  ||||||||| | || |||||| | || |||||||| ||||||| ||||||||||| ||||||||||||||    
T  34474 tgtaaatccctctgaattctttatataaatctctataaattggacagtttctttagattttttgattatttgcttacaatttcttatgta 34563  T

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