View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16610_low_3 (Length: 389)
Name: NF16610_low_3
Description: NF16610
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16610_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 11 - 373
Target Start/End: Original strand, 28022620 - 28022982
Alignment:
| Q |
11 |
agaacctgtggtagaaatatcggtatcagaacttgtttttgatcttaaaagcaaaatcgaagacgagttggaggtgggagtacacaggcaaaatctctgg |
110 |
Q |
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| T |
28022620 |
agaacctgtggtagaaatatcggtatcagaacttgtttttgatcttaaaagcaaaatcgaaaacgagttggaggtgggagtacacaggcaaaatctctgg |
28022719 |
T |
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| Q |
111 |
tacaagggtatagagttggataatgagaaaaggattggattctatgctttgtgcggagatgaaacagaaacagttactctcattgttgatccactgccat |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
28022720 |
tacaagggtatagagttggataatgagaaaaggattggattctatgctttgcgcggagatgaaacagaaacagttactctcattgttgatccgctgccat |
28022819 |
T |
|
| Q |
211 |
cagacctgaaactacatgttttagtgaagtttcttggccatggcagcaatggctatgtgagggtgaaggagaccgataaggtgagtgacctgtgcgacaa |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
28022820 |
cagacctgaaactacatgttttagtgaagtttcttggccatggcagcaatggctatgtgagggtgaaggagaccgataaggtgagtgacctgtgcaacaa |
28022919 |
T |
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| Q |
311 |
agtttcacgatattggggcattccccttgatactttcacccttcatcgtctcaatgttgaaat |
373 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28022920 |
agtttcacggtattggggcattccccttgatactttcacccttcatcgtctcaatgttgaaat |
28022982 |
T |
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