View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16610_low_4 (Length: 311)
Name: NF16610_low_4
Description: NF16610
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16610_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 66 - 293
Target Start/End: Original strand, 33043010 - 33043237
Alignment:
| Q |
66 |
tatcttctaataccatattagagcatgacactcaagagaaaaaactagctgtgattgcaatatgcatttcattattgatcaaatgaactttaaagtaaac |
165 |
Q |
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| T |
33043010 |
tatcttctaataccgtattagagcatgacactcgagagaaaaaactagttgtgattgcaatatgcatttcattattgatcaaatgaactttaaagtaaac |
33043109 |
T |
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| Q |
166 |
gagctagctcaccatacataagctagtgatgaagctctaactactaactgaacagtgaaagaaaacatttacaattagttagcaactaacaaccatctat |
265 |
Q |
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| T |
33043110 |
gagctagctcaccatccataagctagtgatgaagctctaactactaactgaacaatgaaagaaaacatttacaattagttagcaactaacaaccatctat |
33043209 |
T |
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| Q |
266 |
aacttgctaactaaaaattactcataat |
293 |
Q |
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| T |
33043210 |
aacttgctaactaacaattactcataat |
33043237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 91 - 157
Target Start/End: Original strand, 33040962 - 33041028
Alignment:
| Q |
91 |
tgacactcaagagaaaaaactagctgtgattgcaatatgcatttcattattgatcaaatgaacttta |
157 |
Q |
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|||||||||||||| |||| || ||||||||||| |||||||||| ||||||||| ||||||||| |
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| T |
33040962 |
tgacactcaagagagaaaattaattgtgattgcaagatgcatttcactattgatcatctgaacttta |
33041028 |
T |
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