View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16611_high_12 (Length: 349)
Name: NF16611_high_12
Description: NF16611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16611_high_12 |
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Alignment Details
Target: chr7 (Bit Score: 146; Significance: 7e-77; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 116 - 334
Target Start/End: Original strand, 30277700 - 30277922
Alignment:
| Q |
116 |
gcaactaattaatgtta--aataag-gaatatttta-tatctataagatgattnnnnnnnctcttagtggagtactattgtgtagctagctgcacctcat |
211 |
Q |
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||||||||||||||||| ||||| |||||||| | |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
30277700 |
gcaactaattaatgttataaataaaagaatatttaaatatctataagatgattaaaaaaactcttagtggagtactattgtgtagctagctgcacctcat |
30277799 |
T |
|
| Q |
212 |
tcttaatttattccgcacatnnnnnnnttgctgaccacaaatatcacaaggtggcaataacaaccacacatttgcatgcactaagacatactcgatcgtg |
311 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30277800 |
tcttaatttattccgcacataaaaaaattgctgaccacaaatatcacaaggtggcaataacaaccacacatttgcatgcactaagacatactcgatcgtg |
30277899 |
T |
|
| Q |
312 |
tcacacctcaggaatcaatatat |
334 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
30277900 |
tcacacctcaggaatcaatatat |
30277922 |
T |
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