View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16611_high_14 (Length: 316)

Name: NF16611_high_14
Description: NF16611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16611_high_14
NF16611_high_14
[»] chr2 (16 HSPs)
chr2 (32-294)||(17188146-17188408)
chr2 (51-158)||(17179893-17180000)
chr2 (229-294)||(15884510-15884575)
chr2 (242-294)||(9470162-9470214)
chr2 (242-294)||(38464244-38464296)
chr2 (229-283)||(16719464-16719518)
chr2 (229-282)||(14489573-14489626)
chr2 (242-294)||(7919317-7919369)
chr2 (242-294)||(44274315-44274367)
chr2 (240-290)||(25238322-25238372)
chr2 (240-294)||(26767806-26767860)
chr2 (240-297)||(30718372-30718429)
chr2 (242-283)||(35316448-35316489)
chr2 (242-294)||(10981599-10981651)
chr2 (242-294)||(34142186-34142238)
chr2 (242-282)||(45554652-45554692)
[»] chr7 (13 HSPs)
chr7 (241-294)||(22190020-22190073)
chr7 (242-294)||(27888363-27888415)
chr7 (229-288)||(25686869-25686928)
chr7 (240-297)||(6442243-6442300)
chr7 (229-294)||(12263470-12263535)
chr7 (242-294)||(36845569-36845621)
chr7 (242-297)||(31502511-31502566)
chr7 (249-297)||(27320452-27320500)
chr7 (229-297)||(46517369-46517437)
chr7 (242-297)||(27949351-27949406)
chr7 (240-294)||(33008185-33008239)
chr7 (240-297)||(3855855-3855912)
chr7 (242-294)||(39254164-39254216)
[»] chr4 (17 HSPs)
chr4 (242-294)||(49077330-49077382)
chr4 (242-297)||(24834656-24834711)
chr4 (242-292)||(43771209-43771259)
chr4 (242-283)||(722249-722290)
chr4 (242-283)||(754627-754668)
chr4 (240-296)||(5044585-5044641)
chr4 (242-297)||(24938462-24938517)
chr4 (242-297)||(26361355-26361410)
chr4 (242-297)||(50164473-50164528)
chr4 (242-283)||(8109048-8109089)
chr4 (240-280)||(37451058-37451098)
chr4 (242-294)||(39471238-39471290)
chr4 (240-294)||(48339385-48339439)
chr4 (242-299)||(20454614-20454671)
chr4 (240-273)||(40991634-40991667)
chr4 (242-294)||(47009270-47009322)
chr4 (242-294)||(49242251-49242303)
[»] chr3 (21 HSPs)
chr3 (229-295)||(24429059-24429125)
chr3 (242-297)||(18427197-18427252)
chr3 (242-292)||(28529334-28529384)
chr3 (242-296)||(52124003-52124057)
chr3 (242-294)||(41451942-41451994)
chr3 (240-283)||(10948605-10948648)
chr3 (229-294)||(752473-752538)
chr3 (242-295)||(46450146-46450199)
chr3 (242-283)||(50156707-50156748)
chr3 (242-294)||(20493492-20493544)
chr3 (242-294)||(24734786-24734838)
chr3 (242-294)||(29755581-29755633)
chr3 (246-294)||(37776754-37776802)
chr3 (246-294)||(41707490-41707538)
chr3 (242-297)||(38414725-38414780)
chr3 (229-294)||(742037-742102)
chr3 (244-297)||(26310495-26310548)
chr3 (242-283)||(29588780-29588821)
chr3 (242-274)||(20791397-20791429)
chr3 (240-280)||(37285378-37285418)
chr3 (240-283)||(44844073-44844117)
[»] chr8 (13 HSPs)
chr8 (240-297)||(35819210-35819267)
chr8 (240-294)||(1977218-1977272)
chr8 (228-294)||(9952790-9952856)
chr8 (242-294)||(8903933-8903985)
chr8 (242-294)||(8914852-8914904)
chr8 (242-294)||(32072178-32072230)
chr8 (242-297)||(17499280-17499335)
chr8 (229-294)||(28413903-28413968)
chr8 (242-294)||(16983475-16983527)
chr8 (242-283)||(24055972-24056013)
chr8 (250-294)||(9192082-9192126)
chr8 (229-297)||(11962716-11962783)
chr8 (240-292)||(36629740-36629792)
[»] chr5 (14 HSPs)
chr5 (240-297)||(25919289-25919346)
chr5 (240-296)||(28223821-28223877)
chr5 (242-294)||(34368441-34368493)
chr5 (240-294)||(5413782-5413836)
chr5 (240-296)||(36337935-36337991)
chr5 (242-294)||(41330440-41330492)
chr5 (229-292)||(28434852-28434915)
chr5 (229-294)||(1923586-1923651)
chr5 (242-283)||(28490769-28490810)
chr5 (229-294)||(41105604-41105669)
chr5 (240-280)||(17434894-17434934)
chr5 (244-296)||(25630886-25630938)
chr5 (240-280)||(28611823-28611863)
chr5 (242-274)||(30325921-30325953)
[»] chr1 (19 HSPs)
chr1 (229-297)||(33193128-33193196)
chr1 (244-294)||(49730945-49730995)
chr1 (242-294)||(32211831-32211883)
chr1 (242-297)||(41958161-41958216)
chr1 (242-294)||(10659815-10659867)
chr1 (242-294)||(30678958-30679010)
chr1 (240-294)||(3872679-3872733)
chr1 (242-280)||(15523305-15523343)
chr1 (242-280)||(15531299-15531337)
chr1 (240-297)||(931452-931509)
chr1 (246-283)||(11987718-11987755)
chr1 (240-297)||(33114049-33114106)
chr1 (229-294)||(35336941-35337006)
chr1 (228-297)||(47644330-47644399)
chr1 (242-294)||(8899095-8899147)
chr1 (240-280)||(12767373-12767413)
chr1 (242-274)||(22540469-22540501)
chr1 (229-297)||(44271996-44272064)
chr1 (238-290)||(50539209-50539261)
[»] chr6 (10 HSPs)
chr6 (242-294)||(34905417-34905469)
chr6 (242-283)||(16852020-16852061)
chr6 (240-297)||(32122873-32122930)
chr6 (242-294)||(5106379-5106431)
chr6 (242-294)||(12780806-12780858)
chr6 (240-283)||(10133203-10133246)
chr6 (242-297)||(16436142-16436197)
chr6 (241-295)||(17144717-17144771)
chr6 (229-294)||(445899-445964)
chr6 (242-274)||(21987393-21987425)
[»] scaffold0018 (1 HSPs)
scaffold0018 (242-294)||(27893-27945)
[»] scaffold0543 (1 HSPs)
scaffold0543 (242-297)||(9742-9797)
[»] scaffold0492 (1 HSPs)
scaffold0492 (242-297)||(11288-11343)
[»] scaffold0204 (1 HSPs)
scaffold0204 (240-294)||(26907-26961)


Alignment Details
Target: chr2 (Bit Score: 215; Significance: 1e-118; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 32 - 294
Target Start/End: Complemental strand, 17188408 - 17188146
Alignment:
Q  32 ttggagaggcaaagtcaataatacttagtagtgaataaaatccttctcgttgagaaggcaaatcactctgttaggagtggagtgaactagctatcagctg 131  Q
    ||||||||||  |||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17188408 ttggagaggccgagtcaaaaatacttattagtgaataaaatccttctcgttgagaaggcaaatcactctgttaggagtggagtgaactagctatcagctg 17188309  T
Q  132 gacaatgaacaagtagaaacatattgcgcgattatctcttcccttatactctttatttactttgagcaagttctatatggtttagagcaatgctagaaat 231  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  17188308 gacaatgaacaagtagaaacatattgcgcgattatctcttcccttatactctttatttactttgagcaagttctatatggtttagagcaatgctagcaat 17188209  T
Q  232 actcgttattttattggtttaaatcattgcgggtctacactttaaaaattgagcccacacaaa 294  Q
    |||| |||||||||||||||||||||||  ||| ||||||||| |||||||||  ||||||||    
T  17188208 actcattattttattggtttaaatcattctgggcctacactttgaaaattgagttcacacaaa 17188146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 51 - 158
Target Start/End: Complemental strand, 17180000 - 17179893
Alignment:
Q  51 aatacttagtagtgaataaaatccttctcgttgagaaggcaaatcactctgttaggagtggagtgaactagctatcagctggacaatgaacaagtagaaa 150  Q
    |||||||| |||||||| |||||||||||||  |||||||||||| ||||| |||| ||||||||||||||||||||  |||| |||||||||| |||||    
T  17180000 aatacttattagtgaattaaatccttctcgtgtagaaggcaaatcgctctggtaggtgtggagtgaactagctatcaaatggataatgaacaagcagaaa 17179901  T
Q  151 catattgc 158  Q
    ||||||||    
T  17179900 catattgc 17179893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 229 - 294
Target Start/End: Complemental strand, 15884575 - 15884510
Alignment:
Q  229 aatactcgttattttattggtttaaatcattgcgggtctacactttaaaaattgagcccacacaaa 294  Q
    ||||||| |||| |||||||||||||| |||| ||||||||| ||| |||||||| ||||||||||    
T  15884575 aatactcattatcttattggtttaaataattgtgggtctacattttgaaaattgaacccacacaaa 15884510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 242 - 294
Target Start/End: Complemental strand, 9470214 - 9470162
Alignment:
Q  242 ttattggtttaaatcattgcgggtctacactttaaaaattgagcccacacaaa 294  Q
    ||||||||||||||||||| ||||||||||||| |||||||| |||| |||||    
T  9470214 ttattggtttaaatcattgtgggtctacactttgaaaattgaacccaaacaaa 9470162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 242 - 294
Target Start/End: Complemental strand, 38464296 - 38464244
Alignment:
Q  242 ttattggtttaaatcattgcgggtctacactttaaaaattgagcccacacaaa 294  Q
    ||||||||||||||||||| ||||||||||||| |||||||| ||||| ||||    
T  38464296 ttattggtttaaatcattgtgggtctacactttgaaaattgaacccacgcaaa 38464244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 229 - 283
Target Start/End: Original strand, 16719464 - 16719518
Alignment:
Q  229 aatactcgttattttattggtttaaatcattgcgggtctacactttaaaaattga 283  Q
    ||||||| || || |||||||||||||||||||||||||||| ||| ||||||||    
T  16719464 aatactcatttttgtattggtttaaatcattgcgggtctacattttgaaaattga 16719518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 229 - 282
Target Start/End: Original strand, 14489573 - 14489626
Alignment:
Q  229 aatactcgttattttattggtttaaatcattgcgggtctacactttaaaaattg 282  Q
    ||||||| || |||||||||||||||| |||| || ||||||||||||||||||    
T  14489573 aatactcattcttttattggtttaaattattgtggatctacactttaaaaattg 14489626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 294
Target Start/End: Original strand, 7919317 - 7919369
Alignment:
Q  242 ttattggtttaaatcattgcgggtctacactttaaaaattgagcccacacaaa 294  Q
    ||||||||||||||||||| || |||||||||| ||||||||  |||||||||    
T  7919317 ttattggtttaaatcattgtggatctacactttgaaaattgaatccacacaaa 7919369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 294
Target Start/End: Complemental strand, 44274367 - 44274315
Alignment:
Q  242 ttattggtttaaatcattgcgggtctacactttaaaaattgagcccacacaaa 294  Q
    ||||||||||||||||||| || |||||||||| ||| |||| ||||||||||    
T  44274367 ttattggtttaaatcattgtggatctacactttgaaagttgaacccacacaaa 44274315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 290
Target Start/End: Original strand, 25238322 - 25238372
Alignment:
Q  240 ttttattggtttaaatcattgcgggtctacactttaaaaattgagcccaca 290  Q
    ||||||||||||||||||||| || |||||||||| ||||| || ||||||    
T  25238322 ttttattggtttaaatcattgtggatctacactttgaaaatagaacccaca 25238372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 294
Target Start/End: Original strand, 26767806 - 26767860
Alignment:
Q  240 ttttattggtttaaatcattgcgggtctacactttaaaaattgagcccacacaaa 294  Q
    ||||||||||||||||||||| | ||||||| ||| |||||||| ||| ||||||    
T  26767806 ttttattggtttaaatcattgtgagtctacaatttgaaaattgaaccctcacaaa 26767860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 297
Target Start/End: Original strand, 30718372 - 30718429
Alignment:
Q  240 ttttattggtttaaatcattgcgggtctacactttaaaaattgagcccacacaaaatg 297  Q
    ||||||||||||||||||||| | ||||||||||| |||||  |  ||||||||||||    
T  30718372 ttttattggtttaaatcattgtgagtctacactttgaaaatacaatccacacaaaatg 30718429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 283
Target Start/End: Original strand, 35316448 - 35316489
Alignment:
Q  242 ttattggtttaaatcattgcgggtctacactttaaaaattga 283  Q
    |||||| |||||||||||| ||||||||| ||||||||||||    
T  35316448 ttattgatttaaatcattgtgggtctacaatttaaaaattga 35316489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 294
Target Start/End: Complemental strand, 10981651 - 10981599
Alignment:
Q  242 ttattggtttaaatcattgcgggtctacactttaaaaattgagcccacacaaa 294  Q
    ||||||||||||||||||| |||||||||| ||  |||| || ||||||||||    
T  10981651 ttattggtttaaatcattgtgggtctacacattggaaatagaacccacacaaa 10981599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 294
Target Start/End: Original strand, 34142186 - 34142238
Alignment:
Q  242 ttattggtttaaatcattgcgggtctacactttaaaaattgagcccacacaaa 294  Q
    ||||||||||||| ||||| |  |||||||||| |||||||| ||||||||||    
T  34142186 ttattggtttaaaccattgtgactctacactttgaaaattgaacccacacaaa 34142238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 282
Target Start/End: Complemental strand, 45554692 - 45554652
Alignment:
Q  242 ttattggtttaaatcattgcgggtctacactttaaaaattg 282  Q
    ||||||||||||||||||| ||||||||||||  |||||||    
T  45554692 ttattggtttaaatcattgtgggtctacacttggaaaattg 45554652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 241 - 294
Target Start/End: Complemental strand, 22190073 - 22190020
Alignment:
Q  241 tttattggtttaaatcattgcgggtctacactttaaaaattgagcccacacaaa 294  Q
    |||||||||||||||||||||||||||||||||| |||||||| ||||||||||    
T  22190073 tttattggtttaaatcattgcgggtctacactttgaaaattgaacccacacaaa 22190020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 242 - 294
Target Start/End: Complemental strand, 27888415 - 27888363
Alignment:
Q  242 ttattggtttaaatcattgcgggtctacactttaaaaattgagcccacacaaa 294  Q
    ||||||||||||||||||| |||||||||||||||||||||| ||||||||||    
T  27888415 ttattggtttaaatcattgtgggtctacactttaaaaattgaacccacacaaa 27888363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 229 - 288
Target Start/End: Original strand, 25686869 - 25686928
Alignment:
Q  229 aatactcgttattttattggtttaaatcattgcgggtctacactttaaaaattgagccca 288  Q
    ||||||| |||| ||||||||||||||||||| ||||||||||||| |||||||| ||||    
T  25686869 aatactcattatcttattggtttaaatcattgtgggtctacactttgaaaattgaaccca 25686928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 240 - 297
Target Start/End: Complemental strand, 6442300 - 6442243
Alignment:
Q  240 ttttattggtttaaatcattgcgggtctacactttaaaaattgagcccacacaaaatg 297  Q
    ||||||||||||||||||||| ||||||||||||| ||||||||  || |||||||||    
T  6442300 ttttattggtttaaatcattgtgggtctacactttgaaaattgaatccccacaaaatg 6442243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 229 - 294
Target Start/End: Original strand, 12263470 - 12263535
Alignment:
Q  229 aatactcgttattttattggtttaaatcattgcgggtctacactttaaaaattgagcccacacaaa 294  Q
    |||||||  ||| ||||||||||||||||||| ||||||||||||| |||||||| || |||||||    
T  12263470 aatactcactatcttattggtttaaatcattgtgggtctacactttgaaaattgatcctacacaaa 12263535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 242 - 294
Target Start/End: Original strand, 36845569 - 36845621
Alignment:
Q  242 ttattggtttaaatcattgcgggtctacactttaaaaattgagcccacacaaa 294  Q
    ||||||||||||||||||| ||||||| ||||| |||||||| ||||||||||    
T  36845569 ttattggtttaaatcattgtgggtctatactttgaaaattgaacccacacaaa 36845621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 242 - 297
Target Start/End: Original strand, 31502511 - 31502566
Alignment:
Q  242 ttattggtttaaatcattgcgggtctacactttaaaaattgagcccacacaaaatg 297  Q
    ||||||||||||||||||| | ||||||||||| |||||||| | |||||||||||    
T  31502511 ttattggtttaaatcattgtgagtctacactttgaaaattgaacgcacacaaaatg 31502566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 249 - 297
Target Start/End: Complemental strand, 27320500 - 27320452
Alignment:
Q  249 tttaaatcattgcgggtctacactttaaaaattgagcccacacaaaatg 297  Q
    ||||||| |||| |||||||||||||||||||||| || ||||||||||    
T  27320500 tttaaataattgtgggtctacactttaaaaattgaacctacacaaaatg 27320452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 229 - 297
Target Start/End: Complemental strand, 46517437 - 46517369
Alignment:
Q  229 aatactcgttattttattggtttaaatcattgcgggtctacactttaaaaattgagcccacacaaaatg 297  Q
    ||||||| || | ||||||||||||||||||| | ||||||||||| |||||||| ||| |||| ||||    
T  46517437 aatactcattctcttattggtttaaatcattgtgagtctacactttgaaaattgaacccccacagaatg 46517369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 242 - 297
Target Start/End: Complemental strand, 27949406 - 27949351
Alignment:
Q  242 ttattggtttaaatcattgcgggtctacactttaaaaattgagcccacacaaaatg 297  Q
    ||||| ||||||||||||| ||||||||||||| ||| |||| | |||||||||||    
T  27949406 ttattagtttaaatcattgtgggtctacactttgaaatttgaactcacacaaaatg 27949351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 294
Target Start/End: Complemental strand, 33008239 - 33008185
Alignment:
Q  240 ttttattggtttaaatcattgcgggtctacactttaaaaattgagcccacacaaa 294  Q
    ||||||||||||||||||||| |||||||||| ||  |||| || ||||||||||    
T  33008239 ttttattggtttaaatcattgtgggtctacacattggaaatagaacccacacaaa 33008185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 297
Target Start/End: Original strand, 3855855 - 3855912
Alignment:
Q  240 ttttattggtttaaatcattgcgggtctacactttaaaaattgagcccacacaaaatg 297  Q
    |||||||||||||||||||||  |||||  ||||| |||||||| |||||| ||||||    
T  3855855 ttttattggtttaaatcattgtaggtctgaactttgaaaattgaacccacataaaatg 3855912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 294
Target Start/End: Complemental strand, 39254216 - 39254164
Alignment:
Q  242 ttattggtttaaatcattgcgggtctacactttaaaaattgagcccacacaaa 294  Q
    |||||| ||||||| |||| ||||||||| |||||||||||| || |||||||    
T  39254216 ttattgatttaaattattgtgggtctacattttaaaaattgaaccaacacaaa 39254164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 242 - 294
Target Start/End: Complemental strand, 49077382 - 49077330
Alignment:
Q  242 ttattggtttaaatcattgcgggtctacactttaaaaattgagcccacacaaa 294  Q
    ||||||||||||||||||| |||||||||||||||||||||| ||||||||||    
T  49077382 ttattggtttaaatcattgtgggtctacactttaaaaattgaacccacacaaa 49077330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 242 - 297
Target Start/End: Complemental strand, 24834711 - 24834656
Alignment:
Q  242 ttattggtttaaatcattgcgggtctacactttaaaaattgagcccacacaaaatg 297  Q
    |||||||||||||| |||| ||||||||||||| |||||||| |||||||||||||    
T  24834711 ttattggtttaaattattgtgggtctacactttgaaaattgaacccacacaaaatg 24834656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 242 - 292
Target Start/End: Complemental strand, 43771259 - 43771209
Alignment:
Q  242 ttattggtttaaatcattgcgggtctacactttaaaaattgagcccacaca 292  Q
    ||||||||||||||||||| ||||||||||||| |||||||| ||||||||    
T  43771259 ttattggtttaaatcattgtgggtctacactttgaaaattgaacccacaca 43771209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 242 - 283
Target Start/End: Complemental strand, 722290 - 722249
Alignment:
Q  242 ttattggtttaaatcattgcgggtctacactttaaaaattga 283  Q
    ||||||||||||||||||| ||||||||||||||||||||||    
T  722290 ttattggtttaaatcattgtgggtctacactttaaaaattga 722249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 242 - 283
Target Start/End: Original strand, 754627 - 754668
Alignment:
Q  242 ttattggtttaaatcattgcgggtctacactttaaaaattga 283  Q
    ||||||||||||||||||| ||||||||||||||||||||||    
T  754627 ttattggtttaaatcattgtgggtctacactttaaaaattga 754668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 240 - 296
Target Start/End: Original strand, 5044585 - 5044641
Alignment:
Q  240 ttttattggtttaaatcattgcgggtctacactttaaaaattgagcccacacaaaat 296  Q
    ||||||||||||||||| ||| ||||||||| |||||||||||| | ||||||||||    
T  5044585 ttttattggtttaaatcgttgtgggtctacattttaaaaattgaactcacacaaaat 5044641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 242 - 297
Target Start/End: Original strand, 24938462 - 24938517
Alignment:
Q  242 ttattggtttaaatcattgcgggtctacactttaaaaattgagcccacacaaaatg 297  Q
    |||||||||||||||||||  |||||||||||||||||||||  ||| ||||||||    
T  24938462 ttattggtttaaatcattgtaggtctacactttaaaaattgaatccaaacaaaatg 24938517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 242 - 297
Target Start/End: Original strand, 26361355 - 26361410
Alignment:
Q  242 ttattggtttaaatcattgcgggtctacactttaaaaattgagcccacacaaaatg 297  Q
    ||||||||||||||||||  ||||||||||||| || ||||| |||||||||||||    
T  26361355 ttattggtttaaatcattatgggtctacactttgaatattgaacccacacaaaatg 26361410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 242 - 297
Target Start/End: Complemental strand, 50164528 - 50164473
Alignment:
Q  242 ttattggtttaaatcattgcgggtctacactttaaaaattgagcccacacaaaatg 297  Q
    ||||||||||||||||||| | ||||||||||| |||||||| ||| |||||||||    
T  50164528 ttattggtttaaatcattgtgagtctacactttgaaaattgaacccccacaaaatg 50164473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 242 - 283
Target Start/End: Complemental strand, 8109089 - 8109048
Alignment:
Q  242 ttattggtttaaatcattgcgggtctacactttaaaaattga 283  Q
    ||||||||||||||||||| ||||||||||||| ||||||||    
T  8109089 ttattggtttaaatcattgtgggtctacactttgaaaattga 8109048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 240 - 280
Target Start/End: Original strand, 37451058 - 37451098
Alignment:
Q  240 ttttattggtttaaatcattgcgggtctacactttaaaaat 280  Q
    ||||||||||||||||||||||| ||||||||||| |||||    
T  37451058 ttttattggtttaaatcattgcgagtctacactttgaaaat 37451098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 294
Target Start/End: Complemental strand, 39471290 - 39471238
Alignment:
Q  242 ttattggtttaaatcattgcgggtctacactttaaaaattgagcccacacaaa 294  Q
    ||||||||||||||||||| ||||||||||||| || ||||| || |||||||    
T  39471290 ttattggtttaaatcattgtgggtctacactttgaagattgaaccaacacaaa 39471238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 294
Target Start/End: Original strand, 48339385 - 48339439
Alignment:
Q  240 ttttattggtttaaatcattgcgggtctacactttaaaaattgagcccacacaaa 294  Q
    ||||||||||||||| ||||  |||||||| |||| |||||||| ||||||||||    
T  48339385 ttttattggtttaaagcattatgggtctacgctttgaaaattgaacccacacaaa 48339439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 299
Target Start/End: Complemental strand, 20454671 - 20454614
Alignment:
Q  242 ttattggtttaaatcattgcgggtctacactttaaaaattgagcccacacaaaatgtg 299  Q
    |||||| |||||||||||| || |||||||||| |||||||| || ||||||| ||||    
T  20454671 ttattgatttaaatcattgtggatctacactttgaaaattgaaccaacacaaagtgtg 20454614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 273
Target Start/End: Original strand, 40991634 - 40991667
Alignment:
Q  240 ttttattggtttaaatcattgcgggtctacactt 273  Q
    ||||||||||||||||||||| ||||||||||||    
T  40991634 ttttattggtttaaatcattgtgggtctacactt 40991667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 294
Target Start/End: Complemental strand, 47009322 - 47009270
Alignment:
Q  242 ttattggtttaaatcattgcgggtctacactttaaaaattgagcccacacaaa 294  Q
    ||||||||||||||||||| |  |||||||||| |||||||| | ||||||||    
T  47009322 ttattggtttaaatcattgtgtatctacactttgaaaattgaactcacacaaa 47009270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 294
Target Start/End: Complemental strand, 49242303 - 49242251
Alignment:
Q  242 ttattggtttaaatcattgcgggtctacactttaaaaattgagcccacacaaa 294  Q
    ||||||||||||||||||| |  ||||||| || |||||||| ||||||||||    
T  49242303 ttattggtttaaatcattgtgaatctacacattgaaaattgaacccacacaaa 49242251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 229 - 295
Target Start/End: Original strand, 24429059 - 24429125
Alignment:
Q  229 aatactcgttattttattggtttaaatcattgcgggtctacactttaaaaattgagcccacacaaaa 295  Q
    |||||||  ||||||||||||||||||||||| || ||||||||||||||||||| ||| |||||||    
T  24429059 aatactcactattttattggtttaaatcattgtggatctacactttaaaaattgaaccctcacaaaa 24429125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 242 - 297
Target Start/End: Original strand, 18427197 - 18427252
Alignment:
Q  242 ttattggtttaaatcattgcgggtctacactttaaaaattgagcccacacaaaatg 297  Q
    ||||||||||||||||||| ||||||||||||| ||||| || |||||||||||||    
T  18427197 ttattggtttaaatcattgtgggtctacactttgaaaatagaacccacacaaaatg 18427252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 242 - 292
Target Start/End: Complemental strand, 28529384 - 28529334
Alignment:
Q  242 ttattggtttaaatcattgcgggtctacactttaaaaattgagcccacaca 292  Q
    ||||||||||||||||||| ||||||||||||| |||||||| ||||||||    
T  28529384 ttattggtttaaatcattgtgggtctacactttgaaaattgaacccacaca 28529334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 242 - 296
Target Start/End: Original strand, 52124003 - 52124057
Alignment:
Q  242 ttattggtttaaatcattgcgggtctacactttaaaaattgagcccacacaaaat 296  Q
    ||||||||||||||||||| ||||||||||||| |||||||| ||| ||||||||    
T  52124003 ttattggtttaaatcattgtgggtctacactttgaaaattgaacccccacaaaat 52124057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 242 - 294
Target Start/End: Original strand, 41451942 - 41451994
Alignment:
Q  242 ttattggtttaaatcattgcgggtctacactttaaaaattgagcccacacaaa 294  Q
    ||||||||||||||||||| |||||||| |||| |||||||| ||||||||||    
T  41451942 ttattggtttaaatcattgtgggtctactctttgaaaattgaacccacacaaa 41451994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 240 - 283
Target Start/End: Original strand, 10948605 - 10948648
Alignment:
Q  240 ttttattggtttaaatcattgcgggtctacactttaaaaattga 283  Q
    ||||||||||||||||||||| |||| |||||||||||||||||    
T  10948605 ttttattggtttaaatcattgtgggtttacactttaaaaattga 10948648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 229 - 294
Target Start/End: Complemental strand, 752538 - 752473
Alignment:
Q  229 aatactcgttattttattggtttaaatcattgcgggtctacactttaaaaattgagcccacacaaa 294  Q
    ||||||| || | ||||| ||||||||||||| |||||||||||||| |||| || ||||||||||    
T  752538 aatactcattctcttattagtttaaatcattgtgggtctacactttagaaatagaacccacacaaa 752473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 242 - 295
Target Start/End: Complemental strand, 46450199 - 46450146
Alignment:
Q  242 ttattggtttaaatcattgcgggtctacactttaaaaattgagcccacacaaaa 295  Q
    ||||||||||||||||||| |||||||||||||  |||| || |||||||||||    
T  46450199 ttattggtttaaatcattgtgggtctacactttgcaaatagaacccacacaaaa 46450146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 242 - 283
Target Start/End: Original strand, 50156707 - 50156748
Alignment:
Q  242 ttattggtttaaatcattgcgggtctacactttaaaaattga 283  Q
    ||||||||||||||||||| ||||||||||||| ||||||||    
T  50156707 ttattggtttaaatcattgtgggtctacacttttaaaattga 50156748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 294
Target Start/End: Original strand, 20493492 - 20493544
Alignment:
Q  242 ttattggtttaaatcattgcgggtctacactttaaaaattgagcccacacaaa 294  Q
    ||||||||||||||||||| ||||||||||||| || ||||| ||| ||||||    
T  20493492 ttattggtttaaatcattgtgggtctacactttgaatattgaacccccacaaa 20493544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 294
Target Start/End: Complemental strand, 24734838 - 24734786
Alignment:
Q  242 ttattggtttaaatcattgcgggtctacactttaaaaattgagcccacacaaa 294  Q
    ||||||||||||||||||| ||| |||| |||| |||||||| ||||||||||    
T  24734838 ttattggtttaaatcattgtgggcctactctttgaaaattgaacccacacaaa 24734786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 294
Target Start/End: Complemental strand, 29755633 - 29755581
Alignment:
Q  242 ttattggtttaaatcattgcgggtctacactttaaaaattgagcccacacaaa 294  Q
    |||||||||||||||||||  | |||||||||| |||||||| ||||||||||    
T  29755633 ttattggtttaaatcattgttgatctacactttgaaaattgaacccacacaaa 29755581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 294
Target Start/End: Original strand, 37776754 - 37776802
Alignment:
Q  246 tggtttaaatcattgcgggtctacactttaaaaattgagcccacacaaa 294  Q
    |||||||||||||||  |||||||||||| |||||||| ||||||||||    
T  37776754 tggtttaaatcattgtaggtctacactttgaaaattgaacccacacaaa 37776802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 294
Target Start/End: Original strand, 41707490 - 41707538
Alignment:
Q  246 tggtttaaatcattgcgggtctacactttaaaaattgagcccacacaaa 294  Q
    |||||||||| |||| ||||||| |||||||||||||| ||||||||||    
T  41707490 tggtttaaattattgtgggtctatactttaaaaattgaacccacacaaa 41707538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 242 - 297
Target Start/End: Complemental strand, 38414780 - 38414725
Alignment:
Q  242 ttattggtttaaatcattgcgggtctacactttaaaaattgagcccacacaaaatg 297  Q
    |||||||||||||| || | || ||||||||||||||||| | |||||||||||||    
T  38414780 ttattggtttaaattatcgtggatctacactttaaaaattaaacccacacaaaatg 38414725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 294
Target Start/End: Complemental strand, 742102 - 742037
Alignment:
Q  229 aatactcgttattttattggtttaaatcattgcgggtctacactttaaaaattgagcccacacaaa 294  Q
    ||||||| || | ||||| ||||||||||||| |||||||||||||| |||| ||  |||||||||    
T  742102 aatactcattctcttattagtttaaatcattgtgggtctacactttagaaatagaatccacacaaa 742037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 297
Target Start/End: Original strand, 26310495 - 26310548
Alignment:
Q  244 attggtttaaatcattgcgggtctacactttaaaaattgagcccacacaaaatg 297  Q
    ||||||||||||||||  ||||||||||||| |||||||| || ||| ||||||    
T  26310495 attggtttaaatcattatgggtctacactttgaaaattgaaccaacaaaaaatg 26310548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 283
Target Start/End: Original strand, 29588780 - 29588821
Alignment:
Q  242 ttattggtttaaatcattgcgggtctacactttaaaaattga 283  Q
    |||||| |||||||||||| ||||||||||||| ||||||||    
T  29588780 ttattgatttaaatcattgtgggtctacactttgaaaattga 29588821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 274
Target Start/End: Complemental strand, 20791429 - 20791397
Alignment:
Q  242 ttattggtttaaatcattgcgggtctacacttt 274  Q
    |||||||||||||||||||||| ||||||||||    
T  20791429 ttattggtttaaatcattgcggatctacacttt 20791397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 240 - 280
Target Start/End: Complemental strand, 37285418 - 37285378
Alignment:
Q  240 ttttattggtttaaatcattgcgggtctacactttaaaaat 280  Q
    |||||||||||||||| |||| |||||| ||||||||||||    
T  37285418 ttttattggtttaaattattgtgggtctgcactttaaaaat 37285378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 240 - 283
Target Start/End: Complemental strand, 44844117 - 44844073
Alignment:
Q  240 ttttattggtttaaatcattgcgggtc-tacactttaaaaattga 283  Q
    ||||||||| ||||||||||| ||||| |||||||||||||||||    
T  44844117 ttttattggattaaatcattgtgggtcatacactttaaaaattga 44844073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 240 - 297
Target Start/End: Complemental strand, 35819267 - 35819210
Alignment:
Q  240 ttttattggtttaaatcattgcgggtctacactttaaaaattgagcccacacaaaatg 297  Q
    ||||||| ||||||||||||| ||||||| ||||| ||||||||||||||||||||||    
T  35819267 ttttattagtttaaatcattgtgggtctatactttgaaaattgagcccacacaaaatg 35819210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 240 - 294
Target Start/End: Original strand, 1977218 - 1977272
Alignment:
Q  240 ttttattggtttaaatcattgcgggtctacactttaaaaattgagcccacacaaa 294  Q
    ||||||||||||||||||||| || |||||||||| |||||||| ||||||||||    
T  1977218 ttttattggtttaaatcattgtggatctacactttgaaaattgaacccacacaaa 1977272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 228 - 294
Target Start/End: Original strand, 9952790 - 9952856
Alignment:
Q  228 aaatactcgttattttattggtttaaatcattgcgggtctacactttaaaaattgagcccacacaaa 294  Q
    |||||||| |||| ||||||||||||||||||| |||| |||||||| |||||||| | ||||||||    
T  9952790 aaatactcattatcttattggtttaaatcattgtgggtttacactttgaaaattgaactcacacaaa 9952856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 242 - 294
Target Start/End: Complemental strand, 8903985 - 8903933
Alignment:
Q  242 ttattggtttaaatcattgcgggtctacactttaaaaattgagcccacacaaa 294  Q
    ||||||||||||||||||| ||||||||||||| |||||||| || |||||||    
T  8903985 ttattggtttaaatcattgtgggtctacactttgaaaattgaaccgacacaaa 8903933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 242 - 294
Target Start/End: Complemental strand, 8914904 - 8914852
Alignment:
Q  242 ttattggtttaaatcattgcgggtctacactttaaaaattgagcccacacaaa 294  Q
    ||||||||||||||||||| ||||||||||||| |||| ||| ||||||||||    
T  8914904 ttattggtttaaatcattgtgggtctacactttgaaaaatgaacccacacaaa 8914852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 242 - 294
Target Start/End: Complemental strand, 32072230 - 32072178
Alignment:
Q  242 ttattggtttaaatcattgcgggtctacactttaaaaattgagcccacacaaa 294  Q
    |||||| ||||||| |||| |||||||||||||||||||||| ||||||||||    
T  32072230 ttattgatttaaataattgtgggtctacactttaaaaattgaacccacacaaa 32072178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 242 - 297
Target Start/End: Original strand, 17499280 - 17499335
Alignment:
Q  242 ttattggtttaaatcattgcgggtctacactttaaaaattgagcccacacaaaatg 297  Q
    ||||||||||||||||||| || |||||||||| |||||||| || ||||||||||    
T  17499280 ttattggtttaaatcattgtggatctacactttgaaaattgaaccaacacaaaatg 17499335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 229 - 294
Target Start/End: Original strand, 28413903 - 28413968
Alignment:
Q  229 aatactcgttattttattggtttaaatcattgcgggtctacactttaaaaattgagcccacacaaa 294  Q
    ||||||| || ||||||||||||||||||||  ||||||| ||||| |||||||| | ||||||||    
T  28413903 aatactcattcttttattggtttaaatcattatgggtctatactttgaaaattgaactcacacaaa 28413968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 294
Target Start/End: Complemental strand, 16983527 - 16983475
Alignment:
Q  242 ttattggtttaaatcattgcgggtctacactttaaaaattgagcccacacaaa 294  Q
    ||||||||||||||||||| | ||||||||||| |||||||| ||| ||||||    
T  16983527 ttattggtttaaatcattgtgagtctacactttgaaaattgaacccccacaaa 16983475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 283
Target Start/End: Original strand, 24055972 - 24056013
Alignment:
Q  242 ttattggtttaaatcattgcgggtctacactttaaaaattga 283  Q
    |||||||||||||| |||| ||||||||||||| ||||||||    
T  24055972 ttattggtttaaataattgtgggtctacactttgaaaattga 24056013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 250 - 294
Target Start/End: Complemental strand, 9192126 - 9192082
Alignment:
Q  250 ttaaatcattgcgggtctacactttaaaaattgagcccacacaaa 294  Q
    ||||||||||| | ||||||| |||||||||||| ||||||||||    
T  9192126 ttaaatcattgtgagtctacaatttaaaaattgaacccacacaaa 9192082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 229 - 297
Target Start/End: Original strand, 11962716 - 11962783
Alignment:
Q  229 aatactcgttattttattggtttaaatcattgcgggtctacactttaaaaattgagcccacacaaaatg 297  Q
    |||||||| | ||||||||||||||||||||  || |||||||||| |||||||| || ||| ||||||    
T  11962716 aatactcgcttttttattggtttaaatcatt-tggatctacactttgaaaattgaacctacataaaatg 11962783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 240 - 292
Target Start/End: Complemental strand, 36629792 - 36629740
Alignment:
Q  240 ttttattggtttaaatcattgcgggtctacactttaaaaattgagcccacaca 292  Q
    ||||||||||||| |||||||||||||||||| ||  |||| || ||||||||    
T  36629792 ttttattggtttagatcattgcgggtctacacattggaaatagaacccacaca 36629740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 240 - 297
Target Start/End: Complemental strand, 25919346 - 25919289
Alignment:
Q  240 ttttattggtttaaatcattgcgggtctacactttaaaaattgagcccacacaaaatg 297  Q
    ||||||||||||||||||||| | ||||||||||| |||||||| |||||||||||||    
T  25919346 ttttattggtttaaatcattgtgagtctacactttgaaaattgatcccacacaaaatg 25919289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 240 - 296
Target Start/End: Original strand, 28223821 - 28223877
Alignment:
Q  240 ttttattggtttaaatcattgcgggtctacactttaaaaattgagcccacacaaaat 296  Q
    ||||||||||||||||||||  ||||||| ||||| |||||||||||||||||||||    
T  28223821 ttttattggtttaaatcattatgggtctatactttgaaaattgagcccacacaaaat 28223877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 242 - 294
Target Start/End: Complemental strand, 34368493 - 34368441
Alignment:
Q  242 ttattggtttaaatcattgcgggtctacactttaaaaattgagcccacacaaa 294  Q
    ||||||||||||||||||| ||||||||||||| |||| ||| ||||||||||    
T  34368493 ttattggtttaaatcattgtgggtctacactttgaaaaatgaacccacacaaa 34368441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 240 - 294
Target Start/End: Original strand, 5413782 - 5413836
Alignment:
Q  240 ttttattggtttaaatcattgcgggtctacactttaaaaattgagcccacacaaa 294  Q
    ||||||||||||||||||||  |||||||||||||  ||||||| ||||||||||    
T  5413782 ttttattggtttaaatcattatgggtctacactttgtaaattgaacccacacaaa 5413836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 240 - 296
Target Start/End: Original strand, 36337935 - 36337991
Alignment:
Q  240 ttttattggtttaaatcattgcgggtctacactttaaaaattgagcccacacaaaat 296  Q
    ||||||||||||||||||||| |||||||||||||  ||||||| |  |||||||||    
T  36337935 ttttattggtttaaatcattgtgggtctacactttggaaattgaacatacacaaaat 36337991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 294
Target Start/End: Original strand, 41330440 - 41330492
Alignment:
Q  242 ttattggtttaaatcattgcgggtctacactttaaaaattgagcccacacaaa 294  Q
    ||||||||||||||||||| | ||||||||||| |||||||| || |||||||    
T  41330440 ttattggtttaaatcattgtgagtctacactttgaaaattgaacctacacaaa 41330492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 229 - 292
Target Start/End: Original strand, 28434852 - 28434915
Alignment:
Q  229 aatactcgttattttattggtttaaatcattgcgggtctacactttaaaaattgagcccacaca 292  Q
    ||||||| || | ||||||||||||||||||| ||||||| ||||| |||||||| || |||||    
T  28434852 aatactcattttcttattggtttaaatcattgtgggtctaaactttgaaaattgaaccaacaca 28434915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 294
Target Start/End: Original strand, 1923586 - 1923651
Alignment:
Q  229 aatactcgttattttattggtttaaatcattgcgggtctacactttaaaaattgagcccacacaaa 294  Q
    ||||||| |||| |||||||||||||||||||     |||||||||||||||||| | ||||||||    
T  1923586 aatactcattatcttattggtttaaatcattgtaaaactacactttaaaaattgaactcacacaaa 1923651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 283
Target Start/End: Original strand, 28490769 - 28490810
Alignment:
Q  242 ttattggtttaaatcattgcgggtctacactttaaaaattga 283  Q
    |||||||||||||| |||| ||||||||||||| ||||||||    
T  28490769 ttattggtttaaattattgtgggtctacactttcaaaattga 28490810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 294
Target Start/End: Original strand, 41105604 - 41105669
Alignment:
Q  229 aatactcgttattttattggtttaaatcattgcgggtctacactttaaaaattgagcccacacaaa 294  Q
    |||||||| | | |||||||||||||||| || |||| | |||||| |||||||| ||||||||||    
T  41105604 aatactcgctctcttattggtttaaatcactgtgggtatgcactttgaaaattgaacccacacaaa 41105669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 240 - 280
Target Start/End: Original strand, 17434894 - 17434934
Alignment:
Q  240 ttttattggtttaaatcattgcgggtctacactttaaaaat 280  Q
    |||||||||||||||||| || |||||||||||||| ||||    
T  17434894 ttttattggtttaaatcaatgtgggtctacactttagaaat 17434934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 244 - 296
Target Start/End: Complemental strand, 25630938 - 25630886
Alignment:
Q  244 attggtttaaatcattgcgggtctacactttaaaaattgagcccacacaaaat 296  Q
    ||||||||||||||| | ||||||||||||| |||||||| || | |||||||    
T  25630938 attggtttaaatcatcgtgggtctacactttgaaaattgaacctatacaaaat 25630886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 240 - 280
Target Start/End: Original strand, 28611823 - 28611863
Alignment:
Q  240 ttttattggtttaaatcattgcgggtctacactttaaaaat 280  Q
    |||||||| |||||||||||| | |||||||||||||||||    
T  28611823 ttttattgatttaaatcattgtgcgtctacactttaaaaat 28611863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 274
Target Start/End: Original strand, 30325921 - 30325953
Alignment:
Q  242 ttattggtttaaatcattgcgggtctacacttt 274  Q
    |||||||||||||||||||||| ||||||||||    
T  30325921 ttattggtttaaatcattgcggatctacacttt 30325953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 229 - 297
Target Start/End: Complemental strand, 33193196 - 33193128
Alignment:
Q  229 aatactcgttattttattggtttaaatcattgcgggtctacactttaaaaattgagcccacacaaaatg 297  Q
    ||||||| || | ||||||||||||||||||| ||||||||||||| |||||||| ||| |||||||||    
T  33193196 aatactcattctcttattggtttaaatcattgtgggtctacactttgaaaattgaaccctcacaaaatg 33193128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 244 - 294
Target Start/End: Complemental strand, 49730995 - 49730945
Alignment:
Q  244 attggtttaaatcattgcgggtctacactttaaaaattgagcccacacaaa 294  Q
    ||||||||||||||||| ||||||||||||| |||||||| ||||||||||    
T  49730995 attggtttaaatcattgtgggtctacactttgaaaattgaacccacacaaa 49730945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 242 - 294
Target Start/End: Original strand, 32211831 - 32211883
Alignment:
Q  242 ttattggtttaaatcattgcgggtctacactttaaaaattgagcccacacaaa 294  Q
    ||||||||||||||||||| |||||||||| ||||||||||| | ||||||||    
T  32211831 ttattggtttaaatcattgtgggtctacaccttaaaaattgaactcacacaaa 32211883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 242 - 297
Target Start/End: Complemental strand, 41958216 - 41958161
Alignment:
Q  242 ttattggtttaaatcattgcgggtctacactttaaaaattgagcccacacaaaatg 297  Q
    |||||||||||||||| || ||||||||||||| |||||||| ||| |||||||||    
T  41958216 ttattggtttaaatcactgtgggtctacactttgaaaattgaacccccacaaaatg 41958161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 294
Target Start/End: Original strand, 10659815 - 10659867
Alignment:
Q  242 ttattggtttaaatcattgcgggtctacactttaaaaattgagcccacacaaa 294  Q
    ||||||||||||||||| | ||||||||||||| |||||||| || |||||||    
T  10659815 ttattggtttaaatcatcgtgggtctacactttgaaaattgaacctacacaaa 10659867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 294
Target Start/End: Original strand, 30678958 - 30679010
Alignment:
Q  242 ttattggtttaaatcattgcgggtctacactttaaaaattgagcccacacaaa 294  Q
    ||||||| ||||||||||| | ||||||||||| |||||||| ||||||||||    
T  30678958 ttattggcttaaatcattgtgagtctacactttgaaaattgaacccacacaaa 30679010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 294
Target Start/End: Original strand, 3872679 - 3872733
Alignment:
Q  240 ttttattggtttaaatcattgcgggtctacactttaaaaattgagcccacacaaa 294  Q
    |||||||||||| |||||||| |||||||||||||  ||||||| || |||||||    
T  3872679 ttttattggtttgaatcattgtgggtctacactttggaaattgaacctacacaaa 3872733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 242 - 280
Target Start/End: Complemental strand, 15523343 - 15523305
Alignment:
Q  242 ttattggtttaaatcattgcgggtctacactttaaaaat 280  Q
    |||||||||||||||||||||| ||||||||||| ||||    
T  15523343 ttattggtttaaatcattgcggatctacactttagaaat 15523305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 242 - 280
Target Start/End: Complemental strand, 15531337 - 15531299
Alignment:
Q  242 ttattggtttaaatcattgcgggtctacactttaaaaat 280  Q
    |||||||||||||||||||||| ||||||||||| ||||    
T  15531337 ttattggtttaaatcattgcggatctacactttagaaat 15531299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 297
Target Start/End: Complemental strand, 931509 - 931452
Alignment:
Q  240 ttttattggtttaaatcattgcgggtctacactttaaaaattgagcccacacaaaatg 297  Q
    ||||||||||||||||||||| |||| || | ||| |||||||| |||||| ||||||    
T  931509 ttttattggtttaaatcattgtgggtgtatattttgaaaattgaacccacaaaaaatg 931452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 283
Target Start/End: Complemental strand, 11987755 - 11987718
Alignment:
Q  246 tggtttaaatcattgcgggtctacactttaaaaattga 283  Q
    ||||||||||||||| ||||||||||||| ||||||||    
T  11987755 tggtttaaatcattgtgggtctacactttgaaaattga 11987718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 297
Target Start/End: Complemental strand, 33114106 - 33114049
Alignment:
Q  240 ttttattggtttaaatcattgcgggtctacactttaaaaattgagcccacacaaaatg 297  Q
    ||||||||||||||||||||  || |||||||||| |||||||| || ||| ||||||    
T  33114106 ttttattggtttaaatcattctggatctacactttgaaaattgaacctacataaaatg 33114049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 294
Target Start/End: Complemental strand, 35337006 - 35336941
Alignment:
Q  229 aatactcgttattttattggtttaaatcattgcgggtctacactttaaaaattgagcccacacaaa 294  Q
    |||||||||| | ||||||||||||||||||| | ||||||| |   |||||||| ||||||||||    
T  35337006 aatactcgttctcttattggtttaaatcattgtgtgtctacattaagaaaattgaacccacacaaa 35336941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 297
Target Start/End: Original strand, 47644330 - 47644399
Alignment:
Q  228 aaatactcgttattttattggtttaaatcattgcgggtctacactttaaaaattgagcccacacaaaatg 297  Q
    ||||||||| | | |||||| |||||||||||| |||| ||||| || ||||| || |||||||||||||    
T  47644330 aaatactcgctctcttattgatttaaatcattgtgggtttacacattgaaaatagaacccacacaaaatg 47644399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 294
Target Start/End: Complemental strand, 8899147 - 8899095
Alignment:
Q  242 ttattggtttaaatcattgcgggtctacactttaaaaattgagcccacacaaa 294  Q
    |||||||||||||| |||| ||  ||||||||| |||||||| ||||||||||    
T  8899147 ttattggtttaaattattgtggacctacactttgaaaattgaacccacacaaa 8899095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 240 - 280
Target Start/End: Original strand, 12767373 - 12767413
Alignment:
Q  240 ttttattggtttaaatcattgcgggtctacactttaaaaat 280  Q
    ||||||||||||||||||||  | |||||||||||||||||    
T  12767373 ttttattggtttaaatcattatgagtctacactttaaaaat 12767413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 274
Target Start/End: Complemental strand, 22540501 - 22540469
Alignment:
Q  242 ttattggtttaaatcattgcgggtctacacttt 274  Q
    |||||||||||||||||||||| ||||||||||    
T  22540501 ttattggtttaaatcattgcggatctacacttt 22540469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 229 - 297
Target Start/End: Complemental strand, 44272064 - 44271996
Alignment:
Q  229 aatactcgttattttattggtttaaatcattgcgggtctacactttaaaaattgagcccacacaaaatg 297  Q
    ||||||| || |||||||| ||||||||||||  | |||||||||| |||||||| || ||| ||||||    
T  44272064 aatactcatttttttattgatttaaatcattgttgttctacactttgaaaattgaacctacaaaaaatg 44271996  T

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Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 238 - 290
Target Start/End: Complemental strand, 50539261 - 50539209
Alignment:
Q  238 tattttattggtttaaatcattgcgggtctacactttaaaaattgagcccaca 290  Q
    ||||||||| ||||||||||||||| |||||||||   |||||||| ||||||    
T  50539261 tattttattagtttaaatcattgcgtgtctacactgagaaaattgaacccaca 50539209  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000007; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 242 - 294
Target Start/End: Complemental strand, 34905469 - 34905417
Alignment:
Q  242 ttattggtttaaatcattgcgggtctacactttaaaaattgagcccacacaaa 294  Q
    ||||||||||||||||||| ||||||||||||| |||||||| |||| |||||    
T  34905469 ttattggtttaaatcattgtgggtctacactttgaaaattgaacccaaacaaa 34905417  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 242 - 283
Target Start/End: Original strand, 16852020 - 16852061
Alignment:
Q  242 ttattggtttaaatcattgcgggtctacactttaaaaattga 283  Q
    ||||||||||||||||||| ||||||||||||| ||||||||    
T  16852020 ttattggtttaaatcattgtgggtctacactttgaaaattga 16852061  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 240 - 297
Target Start/End: Complemental strand, 32122930 - 32122873
Alignment:
Q  240 ttttattggtttaaatcattgcgggtctacactttaaaaattgagcccacacaaaatg 297  Q
    ||||||||| ||||||||||| ||||||||||||| |||||||| | | |||||||||    
T  32122930 ttttattggcttaaatcattgtgggtctacactttgaaaattgaactcccacaaaatg 32122873  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 294
Target Start/End: Complemental strand, 5106431 - 5106379
Alignment:
Q  242 ttattggtttaaatcattgcgggtctacactttaaaaattgagcccacacaaa 294  Q
    ||||||||||||||| ||| |||| |||||||| |||||||| ||||||||||    
T  5106431 ttattggtttaaatccttgtgggtgtacactttgaaaattgatcccacacaaa 5106379  T

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Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 294
Target Start/End: Original strand, 12780806 - 12780858
Alignment:
Q  242 ttattggtttaaatcattgcgggtctacactttaaaaattgagcccacacaaa 294  Q
    ||||||||||||||||||| || |||||||||| |||||||| || |||||||    
T  12780806 ttattggtttaaatcattgtggatctacactttgaaaattgaaccaacacaaa 12780858  T

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Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 240 - 283
Target Start/End: Original strand, 10133203 - 10133246
Alignment:
Q  240 ttttattggtttaaatcattgcgggtctacactttaaaaattga 283  Q
    ||||||||||||||||||||| || |||||||||| ||||||||    
T  10133203 ttttattggtttaaatcattgtggttctacactttgaaaattga 10133246  T

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Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 242 - 297
Target Start/End: Complemental strand, 16436197 - 16436142
Alignment:
Q  242 ttattggtttaaatcattgcgggtctacactttaaaaattgagcccacacaaaatg 297  Q
    ||||||||||||||| ||  |||||||||||||| |||| || |||||||||||||    
T  16436197 ttattggtttaaatctttttgggtctacactttagaaatagaacccacacaaaatg 16436142  T

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Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 241 - 295
Target Start/End: Original strand, 17144717 - 17144771
Alignment:
Q  241 tttattggtttaaatcattgcgggtctacactttaaaaattgagcccacacaaaa 295  Q
    |||||| ||||||||||||| ||||||||||||| |||||| | || ||||||||    
T  17144717 tttattagtttaaatcattgtgggtctacactttgaaaatttaacctacacaaaa 17144771  T

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Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 294
Target Start/End: Complemental strand, 445964 - 445899
Alignment:
Q  229 aatactcgttattttattggtttaaatcattgcgggtctacactttaaaaattgagcccacacaaa 294  Q
    ||||||| || | ||||||||||||||||||| |  |||| ||||| |||||||| ||||||||||    
T  445964 aatactcattctcttattggtttaaatcattgtgactctagactttgaaaattgaacccacacaaa 445899  T

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Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 274
Target Start/End: Complemental strand, 21987425 - 21987393
Alignment:
Q  242 ttattggtttaaatcattgcgggtctacacttt 274  Q
    |||||||||||||||||||||| ||||||||||    
T  21987425 ttattggtttaaatcattgcggatctacacttt 21987393  T

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Target: scaffold0018 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 294
Target Start/End: Complemental strand, 27945 - 27893
Alignment:
Q  242 ttattggtttaaatcattgcgggtctacactttaaaaattgagcccacacaaa 294  Q
    ||||||||||||||||||| |||||||||||||  |||| || ||||||||||    
T  27945 ttattggtttaaatcattgtgggtctacactttggaaatagaacccacacaaa 27893  T

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Target: scaffold0543 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0543
Description:

Target: scaffold0543; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 242 - 297
Target Start/End: Complemental strand, 9797 - 9742
Alignment:
Q  242 ttattggtttaaatcattgcgggtctacactttaaaaattgagcccacacaaaatg 297  Q
    ||||| |||||||| |||| | ||||||||||| |||||||| |||||||||||||    
T  9797 ttattcgtttaaattattgtgagtctacacttttaaaattgaacccacacaaaatg 9742  T

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Target: scaffold0492 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0492
Description:

Target: scaffold0492; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 242 - 297
Target Start/End: Complemental strand, 11343 - 11288
Alignment:
Q  242 ttattggtttaaatcattgcgggtctacactttaaaaattgagcccacacaaaatg 297  Q
    ||||| |||||||| |||| | ||||||||||| |||||||| |||||||||||||    
T  11343 ttattcgtttaaattattgtgagtctacacttttaaaattgaacccacacaaaatg 11288  T

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Target: scaffold0204 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 294
Target Start/End: Original strand, 26907 - 26961
Alignment:
Q  240 ttttattggtttaaatcattgcgggtctacactttaaaaattgagcccacacaaa 294  Q
    ||||||||||||||| ||||  |||||||| |||| |||||||| ||||||||||    
T  26907 ttttattggtttaaagcattatgggtctacgctttgaaaattgaacccacacaaa 26961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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