View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16611_high_15 (Length: 303)
Name: NF16611_high_15
Description: NF16611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16611_high_15 |
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Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 13 - 285
Target Start/End: Original strand, 36582232 - 36582504
Alignment:
| Q |
13 |
aatatgcaggtcagtgagtgcttttgaatttggattgtatgcggtcatcaatcacccgcattcacacaatctgcacattagacggttcaaatttaaaatt |
112 |
Q |
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| T |
36582232 |
aatatgcaggtcagtgagtgtttttgaatttggattgtatgcggtcatcaatcacccgcattcacacaatctgcacattagacggttcaaatttaaaatt |
36582331 |
T |
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| Q |
113 |
ccgactgtattgaaatttgaaatatttgatctagaatcaacaacccttgatgtgccgactgcataaatgtgggtattaacaattgtagacaatctgaann |
212 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
36582332 |
ccgatcgtattgaaatttgaaatatttgatctagaatcaacaacccttgatgtgctgactgcataaatgtgggtattaacaattgtagacaatctgaatt |
36582431 |
T |
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| Q |
213 |
nnnnnnnnnnctacatatactagttataaagaattattacctggagctgctacctttcaactggtgaacatga |
285 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
36582432 |
tttgttttttctacatatactagttataaagaattattacctggagctgctacctttcaattggtgaacatga |
36582504 |
T |
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