View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16611_high_17 (Length: 275)
Name: NF16611_high_17
Description: NF16611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16611_high_17 |
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Alignment Details
Target: chr1 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 258
Target Start/End: Original strand, 5051813 - 5052070
Alignment:
| Q |
1 |
aagttctccatgttgattgtagtatatattgctaatagattgtatgttcacgagctattacctaccaaattttaattggataatggattttgatacttag |
100 |
Q |
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| T |
5051813 |
aagttctccatgttgattgtagtatatattgctaatagattgtatgttcacgagctattacctaccaaatttaaattggataattgattctgatacttag |
5051912 |
T |
|
| Q |
101 |
ttgaacaattatgatagccctttgcccaactgttaaattatgtattattgctgacttgattgatcccggccccaatcacgaggagaagattgaggggaca |
200 |
Q |
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| T |
5051913 |
ttgaacaattatgatagccctttgcccaactgtcaaattatgtattgttgctgacttgattgatcccggccccgatcacgaggagaagattgaggggaca |
5052012 |
T |
|
| Q |
201 |
tgacatttgatatctattagttgtgtactttaaccccctcattccctttacttactgc |
258 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5052013 |
tgacatttgatatctattagttgtgtactttaaccccctcattccctttacttactgc |
5052070 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 4 - 103
Target Start/End: Complemental strand, 51273552 - 51273452
Alignment:
| Q |
4 |
ttctccatgttgattgtagtatatattgctaatagattgt-atgttcacgagctattacctaccaaattttaattggataatggattttgatacttagtt |
102 |
Q |
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||||||||||||||| ||||||||||||||| | ||||| ||||||| ||||||| | ||||||||||||||||||||||| |||| |||||||| ||| |
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| T |
51273552 |
ttctccatgttgattttagtatatattgctagaatattgttatgttcaagagctataagctaccaaattttaattggataatcgattctgatacttggtt |
51273453 |
T |
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| Q |
103 |
g |
103 |
Q |
| |
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| |
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| T |
51273452 |
g |
51273452 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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