View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16611_high_4 (Length: 545)
Name: NF16611_high_4
Description: NF16611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16611_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 490; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 490; E-Value: 0
Query Start/End: Original strand, 17 - 534
Target Start/End: Complemental strand, 24890317 - 24889800
Alignment:
| Q |
17 |
aaaaaggaggtcctccagatattatagtgaacggcgctggcgtcattaacaagaacagtaagatgtgggaggttccctctgaagagtttgattcggtgat |
116 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24890317 |
aaaaaggaggtcctccagatattatagtgaacggcgctggcgtcattaacaagaacagtaagatgtgggaggttccctctgaagagtttgattcggtgat |
24890218 |
T |
|
| Q |
117 |
ggataccaacttgaaaggtactgccaatgtgttgaggcacttcattcctctgatgatcgccaagaacaagaatgaaatgggagggataatagtgaacatg |
216 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24890217 |
ggataccaacttgaaaggtactgccaatgtgttgaggcacttcattcctctaatgatcgccaagaacaagaatgaaatgggagggataatagtgaacatg |
24890118 |
T |
|
| Q |
217 |
tcttctggttggggaagatcaggtgcagcacttgtagcaccttattctgcatccaaatgggcaattgaaggactcactaagtctgttgctgaagagttgc |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24890117 |
tcttctggttggggaagatcaggtgcagcacttgtagcaccttattgtgcatccaaatgggcaattgaaggactcactaagtctgttgctgaagagttgc |
24890018 |
T |
|
| Q |
317 |
cgaaaggaatggcagtagtggcactcaatccaggagtcatcaacactgacatgcttgcttcatgctatggtgcttcctcatcgctttatcaatccccaga |
416 |
Q |
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| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24890017 |
ctaaaggaatggcagtagtggcactgaatccaggagtcatcaacactgacatgcttgcttcatgctatggtgcttcctcatcgctttatcaatccccaga |
24889918 |
T |
|
| Q |
417 |
atcatgggattcagaggcagccaccaagatactcaatcttacacctgcagacaatggtgcttctctctctatttgaagtctcctagctacgtgattgatt |
516 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
24889917 |
atcatgggcttcagaggcagccaccaagatactcaatcttacacctgcagacaatggtgcttctctctctatttgaagtctcctagctacatgattgatt |
24889818 |
T |
|
| Q |
517 |
atcaactttattagtatt |
534 |
Q |
| |
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||||||| |||||||||| |
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| T |
24889817 |
atcaactctattagtatt |
24889800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 17 - 496
Target Start/End: Complemental strand, 26560858 - 26560379
Alignment:
| Q |
17 |
aaaaaggaggtcctccagatattatagtgaacggcgctggcgtcattaacaagaacagtaagatgtgggaggttccctctgaagagtttgattcggtgat |
116 |
Q |
| |
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|||| ||||||||| |||||||||||||||||||||| || ||| |||||||||||| ||||||||||||||||| |||||||||||||||| |||||| |
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| T |
26560858 |
aaaatggaggtccttcagatattatagtgaacggcgccggagtcgttaacaagaacaacaagatgtgggaggttccgtctgaagagtttgatttggtgat |
26560759 |
T |
|
| Q |
117 |
ggataccaacttgaaaggtactgccaatgtgttgaggcacttcattcctctgatgatcgccaagaacaagaatgaaatgggagggataatagtgaacatg |
216 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||| |||||| ||| ||||| | || || ||| ||||| |||||||||||||||||||||| |
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| T |
26560758 |
ggataccaacttgaaaggtgctgccaatgtgttgaggcccttcatacctttgatggttaaaaataaaaagtatgaagagggagggataatagtgaacatg |
26560659 |
T |
|
| Q |
217 |
tcttctggttggggaagatcaggtgcagcacttgtagcaccttattctgcatccaaatgggcaattgaaggactcactaagtctgttgctgaagagttgc |
316 |
Q |
| |
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||||| |||||||||||||||| ||| ||||||||||||||||| | || |||||||||||||||||||||||| || |||||||||| ||||||||||| |
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| T |
26560658 |
tcttcaggttggggaagatcagttgctgcacttgtagcaccttactgtgtatccaaatgggcaattgaaggacttaccaagtctgttgttgaagagttgc |
26560559 |
T |
|
| Q |
317 |
cgaaaggaatggcagtagtggcactcaatccaggagtcatcaacactgacatgcttgcttcatgctatggtgcttcctcatcgctttatcaatccccaga |
416 |
Q |
| |
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| |||| ||||||||| ||||||||||||||||| |||||||||||| |||||||||||| |||||||||||||||||||| ||||||| || |||||| |
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|
| T |
26560558 |
ctaaagtaatggcagtggtggcactcaatccaggggtcatcaacactaacatgcttgctttttgctatggtgcttcctcatctctttatcgattcccaga |
26560459 |
T |
|
| Q |
417 |
atcatgggattcagaggcagccaccaagatactcaatcttacacctgcagacaatggtgcttctctctctatttgaagtc |
496 |
Q |
| |
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|||||||| || |||||||||||||||||||||||||||||||| |||| |||||| ||||||||||||||||||||| |
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| T |
26560458 |
atcatgggttttggaggcagccaccaagatactcaatcttacaccaacagataatggttcttctctctctatttgaagtc |
26560379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 158; E-Value: 8e-84
Query Start/End: Original strand, 231 - 496
Target Start/End: Original strand, 26562943 - 26563208
Alignment:
| Q |
231 |
aagatcaggtgcagcacttgtagcaccttattctgcatccaaatgggcaattgaaggactcactaagtctgttgctgaagagttgccgaaaggaatggca |
330 |
Q |
| |
|
|||||||||||| ||||| ||||||||||| | |||||||||||||| ||||||||||||||| |||||||||||||||||||| || |||||||||||| |
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| T |
26562943 |
aagatcaggtgctgcactcgtagcaccttactttgcatccaaatgggaaattgaaggactcaccaagtctgttgctgaagagtttcctaaaggaatggca |
26563042 |
T |
|
| Q |
331 |
gtagtggcactcaatccaggagtcatcaacactgacatgcttgcttcatgctatggtgcttcctcatcgctttatcaatccccagaatcatgggattcag |
430 |
Q |
| |
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|| ||||||||||| |||||||||||| |||| |||| ||||| || ||||| |||||||||||||| || |||||||||||||||||||||| || | |
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| T |
26563043 |
gtgatggcactcaatacaggagtcatcagcactaacatacttgcgtcttgctacggtgcttcctcatctctctatcaatccccagaatcatgggttttgg |
26563142 |
T |
|
| Q |
431 |
aggcagccaccaagatactcaatcttacacctgcagacaatggtgcttctctctctatttgaagtc |
496 |
Q |
| |
|
||| ||||||||| ||||||||||||||||| || |||||||||||||||||||||||||||||| |
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| T |
26563143 |
aggaagccaccaaaatactcaatcttacacccacaaacaatggtgcttctctctctatttgaagtc |
26563208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 64 - 423
Target Start/End: Original strand, 56436799 - 56437152
Alignment:
| Q |
64 |
aacaagaacagtaagatgtgggaggttccctctgaagagtttgattcggtgatggataccaacttgaaaggtactgccaatgtgttgaggcacttcattc |
163 |
Q |
| |
|
|||||||||| ||||||||||| ||||| ||| |||||||||||| |||||||||||| ||||||||||| ||||||||||||||||| || ||||| | |
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| T |
56436799 |
aacaagaacaacaagatgtgggaagttccttctcaagagtttgatttggtgatggatacaaacttgaaaggaactgccaatgtgttgagacatttcatcc |
56436898 |
T |
|
| Q |
164 |
ctctgatgatcgccaagaacaagaatgaaatgggagggataatagtgaacatgtcttctggttggggaagatcaggtgcagcacttgtagcaccttattc |
263 |
Q |
| |
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|||| |||||| ||||| | | | ||| || ||||| ||| |||||||||||||||||||||| |||||||||||||| || ||||| | |
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| T |
56436899 |
ctctcatgatc------aacaatggaggaggagaaggtattatagttaacttgtcttctggttggggaagatcgggtgcagcacttgttgctccttactg |
56436992 |
T |
|
| Q |
264 |
tgcatccaaatgggcaattgaaggactcactaagtctgttgctgaagagttgccgaaaggaatggcagtagtggcactcaatccaggagtcatcaacact |
363 |
Q |
| |
|
||||||||||||||| |||||||||||||| |||||||| ||| ||||||| || |||||||||| || || ||||||||||| || |||||||||||| |
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|
| T |
56436993 |
tgcatccaaatgggctattgaaggactcacaaagtctgtagctaaagagttaccacaaggaatggctgttgtcgcactcaatcctggtgtcatcaacact |
56437092 |
T |
|
| Q |
364 |
gacatgcttgcttcatgctatggtgcttcctcatcgctttatcaatccccagaatcatgg |
423 |
Q |
| |
|
|||||||||||||| |||| |||||||||| | || |||||||||||||| ||||||||| |
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|
| T |
56437093 |
gacatgcttgcttcttgctttggtgcttccgcttctctttatcaatcccctgaatcatgg |
56437152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 17 - 205
Target Start/End: Original strand, 26562756 - 26562944
Alignment:
| Q |
17 |
aaaaaggaggtcctccagatattatagtgaacggcgctggcgtcattaacaagaacagtaagatgtgggaggttccctctgaagagtttgattcggtgat |
116 |
Q |
| |
|
|||| |||||||||||| ||||||||||||||| |||||| |||||||||||||||| ||||||||||||||| |||||||||||||||| |||||| |
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| T |
26562756 |
aaaatggaggtcctccaaatattatagtgaacgacgctggagtcattaacaagaacaacaagatgtgggaggttttgtctgaagagtttgatttggtgat |
26562855 |
T |
|
| Q |
117 |
ggataccaacttgaaaggtactgccaatgtgttgaggcacttcattcctctgatgatcgccaagaacaagaatgaaatgggagggataa |
205 |
Q |
| |
|
|||||||||||||||||||| || |||||||||||||||||||||| || ||||| | ||||||||||||||| ||||||||||| |
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|
| T |
26562856 |
ggataccaacttgaaaggtaatgtcaatgtgttgaggcacttcatttctttgatggttaaaaagaacaagaatgaagagggagggataa |
26562944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 431 - 498
Target Start/End: Original strand, 56437245 - 56437312
Alignment:
| Q |
431 |
aggcagccaccaagatactcaatcttacacctgcagacaatggtgcttctctctctatttgaagtctc |
498 |
Q |
| |
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|||||||||||| ||| ||||||||||| || ||||| ||||||||||||||||| ||||||||||| |
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| T |
56437245 |
aggcagccaccatgattctcaatcttactccagcagataatggtgcttctctctccgtttgaagtctc |
56437312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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