View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16611_high_7 (Length: 462)
Name: NF16611_high_7
Description: NF16611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16611_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 439; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 1 - 455
Target Start/End: Complemental strand, 43908475 - 43908021
Alignment:
| Q |
1 |
atttcaaatcaccatgatcattttgttgaccatgttttggtttctctttctcctgcaaaaagtagcattcctttcaataagtcatccctggtaggagata |
100 |
Q |
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| T |
43908475 |
atttcaaatcaccatgatcattttgttgaccatgttttggtttctctttctcctgcaaaaagtagcattcctttcaacaagtcatccctggtaggagata |
43908376 |
T |
|
| Q |
101 |
tcaagttttaagtgaatgttaggattaacgatgaaattgacataaccacggcggatcactatgatgttagcaaaaactacattttagtgtttcaacaaat |
200 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
43908375 |
tcaagttttaagtgaatgtttggattaacgatgaaattgacataaccacggcggatcaccatgatgttagcaaaaactacattttagtgtttcaacaaat |
43908276 |
T |
|
| Q |
201 |
tcatatttagtctcactgtggtttcgccaaacatactgtgaatccaaacatggactaagctgaaagcatagctttatatttattctaaagatatgttaga |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43908275 |
tcatatttagtctcactgtggtttcgccaaacatactgtgaatccaaacatggactaagctgaaagcatagctttatatttattctaaagatatgttaga |
43908176 |
T |
|
| Q |
301 |
atcattaaaatagcaaacaaaacaatgataggtgaaagatatttactttatgtaaaacaggaggaggtaaataaagtttctgctccaaagccttcctatc |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43908175 |
atcattaaaatagcaaacaaaacaatgataggtgaaagatatttactttatgtaaaacaggaggaggtaaataaagtttctgctccaaagccttcctatc |
43908076 |
T |
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| Q |
401 |
ccattcaatagagtgctcttgtgctaattcatgcaatagttggatcttcatttct |
455 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
43908075 |
ccattcaatagagtgctcttgtgctaattcatgcaatagctggatcttcatttct |
43908021 |
T |
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