View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16611_high_9 (Length: 435)
Name: NF16611_high_9
Description: NF16611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16611_high_9 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 17 - 424
Target Start/End: Original strand, 52920326 - 52920740
Alignment:
| Q |
17 |
acaagagaatcagaaaaggcaaatgcacctttttgcactcgaaaaatgaattaagtgctgacatgccatattcatccatagatt--------gattctag |
108 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
52920326 |
acaagagaatcggaaaaggcaaatgcacctttttgcactcgaaaaatgaattaagtgctgacatgccatattcatccatagattcatatattgattctag |
52920425 |
T |
|
| Q |
109 |
ctgttcagcaagactgcaatacaacaaattgagaagtgaaatcattaaaattattcttttcaagcagctaattagttccatgtcaaaataatttaaaatc |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52920426 |
ctgttcagcaagactgcaatacaacaaattgagaagtgaaatcattaaaattattcttttcaagcagctaattagttccatgtcaaaataatttaaaatc |
52920525 |
T |
|
| Q |
209 |
tctccgatatttagtatactttcttcactcgaaggtgcactccaatagtgataacagattaaggtttgctactttatttccctaactattattacaggtt |
308 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | |
|
|
| T |
52920526 |
tctctgatatttagtatactttcttcactcgaaggtgcactccaatagtgataacagattaaggttggctactttatttccctaactattattacaggct |
52920625 |
T |
|
| Q |
309 |
tcacaaactatgtcaagtctcattgcaacagtaaggttgttgtgacattggaggttagatcttacacattctagacctggaaatggcccccctagacaca |
408 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52920626 |
tcacaaactatgtcaagtctcagtgcaacagtaaggttgttgtgacattggaggttagatcttacacattctagacctggaaatggcccccctagacaca |
52920725 |
T |
|
| Q |
409 |
ataaggttccattcat |
424 |
Q |
| |
|
|||||| ||||||||| |
|
|
| T |
52920726 |
ataagg-tccattcat |
52920740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 17 - 424
Target Start/End: Original strand, 35232053 - 35232468
Alignment:
| Q |
17 |
acaagagaatcagaaaaggcaaatgcacctttttgcactcgaaaaatgaattaagtgctgacatgccatattcatccatagatt--------gattctag |
108 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
35232053 |
acaagcgaatcagaaaaggcaaatgcacctttttgcactcgaaaaacgaattaagtgctgacatgccatattcatccatagattcatatattgattctag |
35232152 |
T |
|
| Q |
109 |
ctgttcagcaagactgcaatacaacaaattgagaagtgaaatcattaaaattattcttttcaagcagctaattagttccatgtcaaaataatttaaaatc |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| |||||| |
|
|
| T |
35232153 |
ctgttcagcaagactgcaatacaacaaattgataagtgaaatcattaaaattattgttttcaagcagctaattagttccatgccaaaataattcaaaatc |
35232252 |
T |
|
| Q |
209 |
tctccgatatttagtatactttcttcactcgaaggtgcactccaatagtgataacagattaaggtttgctactttatttccctaactattattacaggtt |
308 |
Q |
| |
|
|||| ||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | |
|
|
| T |
35232253 |
tctctgatatttagtatactttattcactcaaaggtgcactccaatagtgataacagattaaggtcggctactttatttccctaactattattacaggct |
35232352 |
T |
|
| Q |
309 |
tcacaaactatgtcaagtctcattgcaacagtaaggttgttgtgacattggaggttagatcttacacattctagacctggaaatggcccccctagacaca |
408 |
Q |
| |
|
||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
35232353 |
tcacaaactatgtcaagcctcagtgcaacagtaaggttgttgtgacattggaggttagatcttacacattctagacctggaaatggcctccctagacaca |
35232452 |
T |
|
| Q |
409 |
ataaggttccattcat |
424 |
Q |
| |
|
|||||||| ||||||| |
|
|
| T |
35232453 |
ataaggttgcattcat |
35232468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University