View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16611_low_1 (Length: 810)
Name: NF16611_low_1
Description: NF16611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16611_low_1 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 710; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 710; E-Value: 0
Query Start/End: Original strand, 15 - 810
Target Start/End: Original strand, 42341619 - 42342413
Alignment:
| Q |
15 |
ataggtacggggtatcctccaccgccgccagctgtttgttacggagggagagtggtgaatggagcagcgggcggttatggcatggcagtggcacaaacta |
114 |
Q |
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| T |
42341619 |
ataggtacggggtatcctccgccgccgccagctatttgttacggagggagagtggtgaatggagcagcgggcggttatggcgtggcagtggcacaaacta |
42341718 |
T |
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| Q |
115 |
tgggaatgggtggacctgttagtccggtttcatcggatgggattggaaatgaaaactcgggtggtcaatttgggattgatatgaatggtttacgaggaag |
214 |
Q |
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| T |
42341719 |
tgggaatgggcggacctgttagtccggtttcatcggatgggattggaaacgaaaactcgggtggtcaatttgggattgatatgaatggtttacgaggaag |
42341818 |
T |
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| Q |
215 |
aaagaggatggttgatggtcctgttgaaagggtggtggagagaaggcagaggaggatgatcaagaatagagagtcagcagcaagatctagagccagaaaa |
314 |
Q |
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| T |
42341819 |
aaagaggatggttgatggtcctgttgaaagggtggtggagagaaggcagaggaggatgatcaagaatagagagtcagcagcaagatctagagccagaaaa |
42341918 |
T |
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| Q |
315 |
caggttcctgaaattttaaccaatcatattatacttaaatctaaaattatgtatccacaaatgtatgaattatttgaaattcttatgtatatatgatcaa |
414 |
Q |
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| T |
42341919 |
caggttcctgaaattttaaccaatcatattatactt-aatctaaaattatgtatccacaaatgtatgaattatttgaaattcttatgtatatatgatcaa |
42342017 |
T |
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| Q |
415 |
gataatacaacattatatttatatgctattgaaggtaacattagtttaagaagaattggtaatatgtcaattttttatcaactctttacatccaaattag |
514 |
Q |
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| T |
42342018 |
gataatacagcattatatttatatgctattgaaggtaacattagtttaagaagaattggtaatatgtcaattttttatcaactctttacatccaaattag |
42342117 |
T |
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| Q |
515 |
aaatagtatgtttaatctagtttaatatttgccattatattgttaatgtgactcctttgtgacacannnnnnnnnnnnnnnnnngcaggcctatacagtt |
614 |
Q |
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| T |
42342118 |
aaatagtatgtttaatctagtttaatatttgccattatattgttaatgtgactcctttgtgacacatttttctttgttgcttttgcaggcctatacagtt |
42342217 |
T |
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| Q |
615 |
gaattagaagcagaactgaatcaattaagagaagagaattctcaactgaaacaggcactggtactgccaaacaacatgaactattataagaatatttgat |
714 |
Q |
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| T |
42342218 |
gaattagaagcagaactgaatcaattaagagaagagaattctcaactgaaacaggcactggtactgccaaacaacatgaactattataagaatatttgat |
42342317 |
T |
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| Q |
715 |
agtttttctttagtgattcaattatactgacaaggatcatgcttcttttattcttcaggctgaactcgagaggagaagaagacaacaggtaaccaa |
810 |
Q |
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| T |
42342318 |
agtttttctttagtgattcaattatactgacaaggatcatgcttcttttattcttcaggctgaactcgagaggagaagaagacaacaggtaaccaa |
42342413 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 613 - 668
Target Start/End: Complemental strand, 9522550 - 9522495
Alignment:
| Q |
613 |
ttgaattagaagcagaactgaatcaattaagagaagagaattctcaactgaaacag |
668 |
Q |
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| T |
9522550 |
ttgaattagaagcagaattgaatcagttaagataagataattcttgactgaaacag |
9522495 |
T |
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