View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16611_low_13 (Length: 413)

Name: NF16611_low_13
Description: NF16611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16611_low_13
NF16611_low_13
[»] chr6 (4 HSPs)
chr6 (26-395)||(22508904-22509249)
chr6 (179-269)||(10117130-10117226)
chr6 (222-269)||(8546246-8546293)
chr6 (210-269)||(32296362-32296421)
[»] chr7 (3 HSPs)
chr7 (180-268)||(33049084-33049172)
chr7 (207-268)||(31742873-31742934)
chr7 (176-269)||(47363815-47363910)
[»] chr8 (2 HSPs)
chr8 (210-269)||(14867365-14867424)
chr8 (175-269)||(23490081-23490176)
[»] chr4 (3 HSPs)
chr4 (177-269)||(28146947-28147040)
chr4 (181-269)||(11440557-11440646)
chr4 (180-269)||(55606358-55606448)
[»] chr5 (5 HSPs)
chr5 (180-269)||(39426201-39426292)
chr5 (179-269)||(20141661-20141751)
chr5 (177-261)||(16341534-16341621)
chr5 (181-249)||(14355012-14355080)
chr5 (210-250)||(36491493-36491533)
[»] chr1 (3 HSPs)
chr1 (175-269)||(32617681-32617776)
chr1 (175-267)||(9457579-9457673)
chr1 (175-267)||(9461676-9461770)
[»] chr2 (3 HSPs)
chr2 (179-269)||(37794763-37794854)
chr2 (179-264)||(19263738-19263824)
chr2 (210-266)||(17989102-17989158)
[»] chr3 (3 HSPs)
chr3 (210-268)||(11783520-11783578)
chr3 (184-269)||(19596551-19596636)
chr3 (206-249)||(46475575-46475618)


Alignment Details
Target: chr6 (Bit Score: 201; Significance: 1e-109; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 26 - 395
Target Start/End: Original strand, 22508904 - 22509249
Alignment:
Q  26 ccaagacaaaccgtaataatccacaatttgaaatgcactactttcgttgtacgacaaaacaaaatatgtaataaccaaggttctaaaatacggctacgag 125  Q
    |||||||||||| |||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||          ||||    
T  22508904 ccaagacaaaccctaataatccacaatttgaaatgcactactttcgt-gtactacaaaacaaaatatgtaataaccaaggttctaa----------cgag 22508992  T
Q  126 aaaaatgccccaacaaaaaggaatagttagtgggcgtcagtgttttc--ccatgccgttcatgacaatggacagagaatccagatattttccaattaaga 223  Q
    ||||| ||||| |||||||| |||||||||||| ||||| |||||||  || ||||||||||||||||||||||||||||||||||||||||||||||||    
T  22508993 aaaaaggccccgacaaaaagaaatagttagtggccgtcactgttttctcccgtgccgttcatgacaatggacagagaatccagatattttccaattaaga 22509092  T
Q  224 tggatgaaaatcacatttttagtacatgtttgaacataaattacatctttctctagttaagaattt--aatctatctctaatttttgtttatatacatat 321  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||  ||||||||||||||||  ||| ||||||||||    
T  22509093 tggatgaaaatcacatttttagtacatgtttgaacataaattacatctttctctggttaagaatttcaaatctatctctaatttacgttaatatacatat 22509192  T
Q  322 tatttaagagttgtacaatgttgtagttaatgcacatggcggatacgacaatcagtatgcaacaactgtataac 395  Q
    ||| ||||||||                 |||||||||||||||||||||||||||||||||||||||||||||    
T  22509193 tatgtaagagtt-----------------atgcacatggcggatacgacaatcagtatgcaacaactgtataac 22509249  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 179 - 269
Target Start/End: Original strand, 10117130 - 10117226
Alignment:
Q  179 cgttcatgacaatggacagagaatccagata-ttttccaattaagatgga-----tgaaaatcacatttttagtacatgtttgaacataaattacat 269  Q
    ||||||||||||| |||| ||||||| |||| |||||||||| |||| ||     ||||||||| ||||||||||||| ||||| ||||||||||||    
T  10117130 cgttcatgacaatagacacagaatccggatatttttccaattgagatagatgaattgaaaatcatatttttagtacatatttgatcataaattacat 10117226  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 222 - 269
Target Start/End: Original strand, 8546246 - 8546293
Alignment:
Q  222 gatggatgaaaatcacatttttagtacatgtttgaacataaattacat 269  Q
    |||||||||||||||||||| |||||||  ||||||||||||||||||    
T  8546246 gatggatgaaaatcacatttctagtacaaatttgaacataaattacat 8546293  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 210 - 269
Target Start/End: Original strand, 32296362 - 32296421
Alignment:
Q  210 ttttccaattaagatggatgaaaatcacatttttagtacatgtttgaacataaattacat 269  Q
    |||| ||||| |||| ||||||||||| ||||||||||||| ||||| ||||| ||||||    
T  32296362 tttttcaattgagatagatgaaaatcatatttttagtacatatttgatcataagttacat 32296421  T

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Target: chr7 (Bit Score: 61; Significance: 5e-26; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 180 - 268
Target Start/End: Original strand, 33049084 - 33049172
Alignment:
Q  180 gttcatgacaatggacagagaatccagatattttccaattaagatggatgaaaatcacatttttagtacatgtttgaacataaattaca 268  Q
    |||||||||||| ||||||||||||   |||||| ||||| |||||||||||||||||||||||||||||| |||||||||||||||||    
T  33049084 gttcatgacaatagacagagaatcccattatttttcaattgagatggatgaaaatcacatttttagtacatatttgaacataaattaca 33049172  T

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Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 207 - 268
Target Start/End: Original strand, 31742873 - 31742934
Alignment:
Q  207 atattttccaattaagatggatgaaaatcacatttttagtacatgtttgaacataaattaca 268  Q
    ||||||| ||||| |||||||||||||||||||||||| ||||| |||||||||| ||||||    
T  31742873 atatttttcaattgagatggatgaaaatcacatttttaatacatatttgaacatatattaca 31742934  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 176 - 269
Target Start/End: Complemental strand, 47363910 - 47363815
Alignment:
Q  176 tgccgttcatgacaatggacagagaatccagata-ttttccaattaaga-tggatgaaaatcacatttttagtacatgtttgaacataaattacat 269  Q
    |||||||||||||||| |||| ||||||| |||| |||| ||||| ||| | |||||||| || ||||||||||||| ||||| |||| |||||||    
T  47363910 tgccgttcatgacaatagacatagaatccggatattttttcaattgagattagatgaaaagcatatttttagtacatatttgatcatagattacat 47363815  T

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Target: chr8 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 210 - 269
Target Start/End: Complemental strand, 14867424 - 14867365
Alignment:
Q  210 ttttccaattaagatggatgaaaatcacatttttagtacatgtttgaacataaattacat 269  Q
    |||| ||||| |||||||||||||||||||||||||||||| ||||||||||||||||||    
T  14867424 tttttcaattgagatggatgaaaatcacatttttagtacatatttgaacataaattacat 14867365  T

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Target: chr8; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 175 - 269
Target Start/End: Complemental strand, 23490176 - 23490081
Alignment:
Q  175 atgccgttcatgacaatggacagagaatccagatattttc-caattaagatggatgaaaatcacatttttagtacatgtttgaacataaattacat 269  Q
    ||||||||||||||||| |||| || |||| ||||||||  ||||| |||| ||||||||||| |||||| |||||| ||||| ||||||||||||    
T  23490176 atgccgttcatgacaatagacatagcatccggatattttttcaattgagatagatgaaaatcatatttttcgtacatatttgatcataaattacat 23490081  T

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Target: chr4 (Bit Score: 46; Significance: 4e-17; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 177 - 269
Target Start/End: Original strand, 28146947 - 28147040
Alignment:
Q  177 gccgttcatgacaatggacagagaatccagatattttc-caattaagatggatgaaaatcacatttttagtacatgtttgaacataaattacat 269  Q
    ||||||||||||||| |||| ||||||  ||||||||  ||||| |||| ||||||||||| ||||||||||||| ||||| ||||||||||||    
T  28146947 gccgttcatgacaatagacatagaatctggatattttttcaattgagatagatgaaaatcatatttttagtacatatttgatcataaattacat 28147040  T

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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 181 - 269
Target Start/End: Original strand, 11440557 - 11440646
Alignment:
Q  181 ttcatgacaatggacagagaatccagata-ttttccaattaagatggatgaaaatcacatttttagtacatgtttgaacataaattacat 269  Q
    ||||||||||| |||| | | ||| |||| |||| |||||||||| ||||||||||| ||||||||||||| ||||| ||||||||||||    
T  11440557 ttcatgacaatagacacatagtccggataatttttcaattaagatagatgaaaatcatatttttagtacatatttgatcataaattacat 11440646  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 180 - 269
Target Start/End: Complemental strand, 55606448 - 55606358
Alignment:
Q  180 gttcatgacaatggacagagaatccagatattttc-caattaagatggatgaaaatcacatttttagtacatgtttgaacataaattacat 269  Q
    |||||||||||| ||||  ||||||| |||||||  ||||| | || ||||||||| | ||||||||||||| ||||| ||||||||||||    
T  55606448 gttcatgacaatagacatggaatccaaatattttttcaattgatatagatgaaaattatatttttagtacatatttgatcataaattacat 55606358  T

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Target: chr5 (Bit Score: 44; Significance: 6e-16; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 180 - 269
Target Start/End: Complemental strand, 39426292 - 39426201
Alignment:
Q  180 gttcatgacaatggacagagaatccagatattttc-caattaagatggatgaaaatcacat-ttttagtacatgtttgaacataaattacat 269  Q
    |||||||||||| |||| |||||||| |||||||  |||||||||| ||||||||||| || ||||||||||| ||||| ||||||||||||    
T  39426292 gttcatgacaatagacatagaatccaaatattttttcaattaagatagatgaaaatcatatattttagtacatatttgatcataaattacat 39426201  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 179 - 269
Target Start/End: Complemental strand, 20141751 - 20141661
Alignment:
Q  179 cgttcatgacaatggacagagaatccagatattttccaattaagatggatgaaaatcacatttttagtacatgtttgaacataaattacat 269  Q
    |||||||||||||  ||| ||| ||| | |||||| ||||| |||||||||||||||| || |||| ||||  ||||||||||||||||||    
T  20141751 cgttcatgacaatatacaaagattcctgttatttttcaatttagatggatgaaaatcatatctttattacagatttgaacataaattacat 20141661  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 177 - 261
Target Start/End: Complemental strand, 16341621 - 16341534
Alignment:
Q  177 gccgttcatgacaatggacagagaatccagata---ttttccaattaagatggatgaaaatcacatttttagtacatgtttgaacata 261  Q
    ||||||||||||||| |||| ||||||| ||||   |||| ||||| |||| |||||||| || ||||||||||||| ||||| ||||    
T  16341621 gccgttcatgacaatagacatagaatccggatattttttttcaattgagatagatgaaaaacatatttttagtacatatttgatcata 16341534  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 249
Target Start/End: Complemental strand, 14355080 - 14355012
Alignment:
Q  181 ttcatgacaatggacagagaatccagatattttccaattaagatggatgaaaatcacatttttagtaca 249  Q
    ||||||||||| |||| | |||| |  |||||| ||||| |||||||||||||||||||||||| ||||    
T  14355080 ttcatgacaatagacataaaatcaatttatttttcaattgagatggatgaaaatcacatttttaataca 14355012  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 210 - 250
Target Start/End: Original strand, 36491493 - 36491533
Alignment:
Q  210 ttttccaattaagatggatgaaaatcacatttttagtacat 250  Q
    |||| |||||||||| ||||||||||| |||||||||||||    
T  36491493 tttttcaattaagatagatgaaaatcatatttttagtacat 36491533  T

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Target: chr1 (Bit Score: 44; Significance: 6e-16; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 175 - 269
Target Start/End: Complemental strand, 32617776 - 32617681
Alignment:
Q  175 atgccgttcatgacaatggacagagaatccagatattttc-caattaagatggatgaaaatcacatttttagtacatgtttgaacataaattacat 269  Q
    |||| |||||||||||| |||| ||||||| | ||||||  ||||| |||| ||||||||||| ||||||||||||| ||||| ||||||||||||    
T  32617776 atgcagttcatgacaatagacatagaatccgggtattttttcaattgagatagatgaaaatcatatttttagtacatatttgatcataaattacat 32617681  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 175 - 267
Target Start/End: Original strand, 9457579 - 9457673
Alignment:
Q  175 atgccgttcatgacaatggacagagaatccagata--ttttccaattaagatggatgaaaatcacatttttagtacatgtttgaacataaattac 267  Q
    ||||||||||||||||| |||| ||||||||||||  |||| ||||| |||| ||| ||||||| ||||||  ||||| | ||| ||||||||||    
T  9457579 atgccgttcatgacaatagacatagaatccagatatttttttcaattgagatagataaaaatcatatttttgatacatatctgatcataaattac 9457673  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 175 - 267
Target Start/End: Original strand, 9461676 - 9461770
Alignment:
Q  175 atgccgttcatgacaatggacagagaatccagata--ttttccaattaagatggatgaaaatcacatttttagtacatgtttgaacataaattac 267  Q
    ||||||||||||||||| |||| ||||||||||||  |||| ||||| |||| ||| ||||||| ||||||  ||||| | ||| ||||||||||    
T  9461676 atgccgttcatgacaatagacatagaatccagatatttttttcaattgagatagataaaaatcatatttttgatacatatctgatcataaattac 9461770  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 179 - 269
Target Start/End: Complemental strand, 37794854 - 37794763
Alignment:
Q  179 cgttcatgacaatggacagagaatccagatattttc-caattaagatggatgaaaatcacatttttagtacatgtttgaacataaattacat 269  Q
    ||||||||||||  |||| ||||||  ||||||||  ||||| |||| || |||||||| ||||||||||||| ||||| ||||||||||||    
T  37794854 cgttcatgacaaaagacatagaatctggatattttttcaattgagatagaagaaaatcatatttttagtacatatttgatcataaattacat 37794763  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 179 - 264
Target Start/End: Original strand, 19263738 - 19263824
Alignment:
Q  179 cgttcatgacaatggacagagaatccagatatt-ttccaattaagatggatgaaaatcacatttttagtacatgtttgaacataaat 264  Q
    ||||||||||||| || | |||||| ||||||| || ||||| |||| ||||||||||| ||||||| ||||| ||||| |||||||    
T  19263738 cgttcatgacaatagatatagaatcaagatattgtttcaattgagatagatgaaaatcatatttttaatacatatttgatcataaat 19263824  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 210 - 266
Target Start/End: Complemental strand, 17989158 - 17989102
Alignment:
Q  210 ttttccaattaagatggatgaaaatcacatttttagtacatgtttgaacataaatta 266  Q
    |||| ||||| |||| ||||||||||| ||||||||||||| ||||| |||||||||    
T  17989158 tttttcaattgagatcgatgaaaatcatatttttagtacatatttgatcataaatta 17989102  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 210 - 268
Target Start/End: Complemental strand, 11783578 - 11783520
Alignment:
Q  210 ttttccaattaagatggatgaaaatcacatttttagtacatgtttgaacataaattaca 268  Q
    |||| ||||| |||| ||||||||||| ||||||||||||| ||||| |||||||||||    
T  11783578 tttttcaattgagatagatgaaaatcatatttttagtacatatttgatcataaattaca 11783520  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 184 - 269
Target Start/End: Complemental strand, 19596636 - 19596551
Alignment:
Q  184 atgacaatggacagagaatccagatattttccaattaagatggatgaaaatcacatttttagtacatgtttgaacataaattacat 269  Q
    ||||||||  || |||||||| | |||||| ||||| || ||||| ||||||| ||||||||||||  ||||||||||| ||||||    
T  19596636 atgacaataaactgagaatccggttatttttcaattgaggtggataaaaatcatatttttagtacaaatttgaacataagttacat 19596551  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 206 - 249
Target Start/End: Original strand, 46475575 - 46475618
Alignment:
Q  206 gatattttccaattaagatggatgaaaatcacatttttagtaca 249  Q
    |||||||| ||||| | |||||||||||||||||||||||||||    
T  46475575 gatatttttcaattgatatggatgaaaatcacatttttagtaca 46475618  T

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