View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16611_low_14 (Length: 410)
Name: NF16611_low_14
Description: NF16611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16611_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 250; Significance: 1e-139; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 20 - 397
Target Start/End: Original strand, 52082106 - 52082497
Alignment:
| Q |
20 |
tttcctttacttctaatcaatcaataataatcaccatacccagaatgtgcgat---------------taccttgtaaaatgttagcnnnnnnntaatca |
104 |
Q |
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| T |
52082106 |
tttcctttacttctaatcaatcaataataatcaccatacccagaatgtgcgatattgttcttggagattaccttgtaaa-tgttagcaataaaataatca |
52082204 |
T |
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| Q |
105 |
tcaaccaaactacaattctttctttaatatatgtcatgnnnnnnnnnnnnnnnncatgggaaaagtaaagattgaaatgttgtgatgaagataacatttc |
204 |
Q |
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| T |
52082205 |
tcaaccaaactacatttctttctttaatatatgtcatgaaaaagaaaaacaaaacatgggaaaagtaaagattgaaatgttgtgatgaagataacatttc |
52082304 |
T |
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| Q |
205 |
aaataatagttttatgactttcagaatactagaaaacaaggcatccatggttcaataaaggtttccacttgtcgtcactaggacaaaaatgagagggagc |
304 |
Q |
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| T |
52082305 |
aaataatagttttatcactttcagaatactagaaaacaaggcatccaaggttcaataaaggtttccacttgtcgtcactaggacaaaaatgagagggagc |
52082404 |
T |
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| Q |
305 |
cataatttttctcaatgatgaccttaaaattaccatcaccatccagaaattaacatcagcacacacattatgacaatcccacaaattcatctc |
397 |
Q |
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| T |
52082405 |
cataatttttctcaatgatgaccttaaaattaccatcaccatccagaaattaacatcagcacacacattatgacaatcccacaaatttatctc |
52082497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 162 - 370
Target Start/End: Original strand, 52092458 - 52092667
Alignment:
| Q |
162 |
gggaaaagtaaagattgaaatgttgtgatgaagataacatttcaaataatagttttatgactttcagaatactagaaaacaaggcatccatggttcaata |
261 |
Q |
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| T |
52092458 |
gggaaaaatgaagattgaaatgttgtgatgaagataacatttcaaataactgttttatcactttcagaatactagaaaacaaggcatccatggttcaata |
52092557 |
T |
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| Q |
262 |
aaggtttccacttgtcgtcactaggacaaaaatgagagggagccataat----ttttctcaatgatgaccttaaaattaccatcaccatccagaaattaa |
357 |
Q |
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| T |
52092558 |
aaggtttccacttgtcgtcact---acaaaaatgagagggagccataatcttaatttctcaatgatgaccttgaaaataccatcatcgtccagaaattaa |
52092654 |
T |
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| Q |
358 |
catcagcacacac |
370 |
Q |
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| T |
52092655 |
catcaacacacac |
52092667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 20 - 64
Target Start/End: Original strand, 52092306 - 52092350
Alignment:
| Q |
20 |
tttcctttacttctaatcaatcaataataatcaccatacccagaa |
64 |
Q |
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| T |
52092306 |
tttcctttacttctaatcaatcaataataatcaccaaaaccagaa |
52092350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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