View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16611_low_18 (Length: 322)
Name: NF16611_low_18
Description: NF16611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16611_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 271; Significance: 1e-151; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 17 - 303
Target Start/End: Original strand, 27561473 - 27561759
Alignment:
| Q |
17 |
cacagactcaaattatttagataaatttctgtacaagaccaatcacaaagtaggtgagaaagaaaatgaaagggcagtttgtgtgaataaccttcccatt |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | |
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| T |
27561473 |
cacagactcaaattatttagataaatttctgtacaagaccaatcacaaagtaggtgagaaagaaaatgaaagggaagtttgtgtgaataaccttcccact |
27561572 |
T |
|
| Q |
117 |
caatttcgctgaatgaatgtgctttctcacgcaatgctacagctttaagagctgcatctttccatcgcttcaactgtgtttccatcatccccatttcttt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
27561573 |
caatttcgctgaatgaatgtgctttctcacgcaatgctacagctttaagagctgcatctttcgatcgcttcaactgtgtttccatcatccccatttcttt |
27561672 |
T |
|
| Q |
217 |
agataaagctgaagatatcacacgaaactcagctttgatatcatttctccctgaaacgtttaatattgtaagaaatgaggagatcca |
303 |
Q |
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| T |
27561673 |
agataaagctgaagatatcacacgaaactcagctttgatatcatttctccctaaaacgtttaatattgtaagaaatgaggagatcca |
27561759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 21 - 303
Target Start/End: Original strand, 36668348 - 36668632
Alignment:
| Q |
21 |
gactcaaattatttagataaatttctgtacaagaccaatcacaaagtaggtgagaaagaaaatgaaagggcagtttgtgtgaataaccttcccattcaat |
120 |
Q |
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|||||||||||| ||||||| |||||||| |||||| ||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||| |
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| T |
36668348 |
gactcaaattatctagataactttctgtaaaagacctatcacaaagaaggtgagaaagaaaatgaaatggcagtttgtgtgaataaccttcccactcaat |
36668447 |
T |
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| Q |
121 |
ttcgctg--aatgaatgtgctttctcacgcaatgctacagctttaagagctgcatctttccatcgcttcaactgtgtttccatcatccccatttctttag |
218 |
Q |
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| T |
36668448 |
ttctctcttagcgaatgtgctttcgcacgcaatgatacagcttcatgagctgcatctttccatcgcttcaactgtgtttccatcatccccatttctttag |
36668547 |
T |
|
| Q |
219 |
ataaagctgaagatatcacacgaaactcagctttgatatcatttctccctgaaacgtttaatattgtaagaaatgaggagatcca |
303 |
Q |
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|||| |||||||| ||||||| |||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
36668548 |
ataaggctgaagacatcacaccaaactcagctttgatatcttttctccctgaaacatttaatattgtaagaaatgaggagatcca |
36668632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 260 - 303
Target Start/End: Original strand, 31707837 - 31707880
Alignment:
| Q |
260 |
tttctccctgaaacgtttaatattgtaagaaatgaggagatcca |
303 |
Q |
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| T |
31707837 |
tttctccttgaaacatttaatattgtaagaaatgaggagatcca |
31707880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 136 - 256
Target Start/End: Complemental strand, 36672887 - 36672766
Alignment:
| Q |
136 |
tgctttctcacgcaatgctacagctttaagagctgcatctttccatcgcttcaactgtgtttccatcatcccca-tttctttagataaagctgaagat-a |
233 |
Q |
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||||||||||| ||||| |||| ||| ||||||| |||||||||||| ||||||||| ||| ||||||| | ||| ||||||||||||| | ||| | |
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| T |
36672887 |
tgctttctcacacaatgatacaacttcaagagctacatctttccatcacttcaactgatcttctgtcatcccaattttttttagataaagct-atgatca |
36672789 |
T |
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| Q |
234 |
tcacacgaaactcagctttgata |
256 |
Q |
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||||||| |||||| |||||||| |
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| T |
36672788 |
tcacacgtaactcaactttgata |
36672766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 154 - 291
Target Start/End: Complemental strand, 27563519 - 27563382
Alignment:
| Q |
154 |
tacagctttaagagctgcatctttccatcgcttcaactgtgtttccatcatcccc-atttctttagataaagctgaagat-atcacacgaaactcagctt |
251 |
Q |
| |
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|||| ||| |||||||||||| ||| ||| ||||||||| ||||||||||||| |||| ||||||||||||| ||||| ||||||| |||||| | |
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| T |
27563519 |
tacaacttcaagagctgcatccttctatcacttcaactgctcttccatcatccccgatttttttagataaagct-aagatcatcacacataactca-agt |
27563422 |
T |
|
| Q |
252 |
tgatatcatttctccctgaaacgtttaatattgtaagaaa |
291 |
Q |
| |
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||||||| | |||||||||||| | ||||| |||||||| |
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| T |
27563421 |
tgatatcttctctccctgaaacatgcaatatggtaagaaa |
27563382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 148; Significance: 4e-78; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 18 - 290
Target Start/End: Complemental strand, 24202719 - 24202445
Alignment:
| Q |
18 |
acagactcaaattatttagataaatttctgtacaagaccaatcacaaagtaggtgagaaagaaaatgaaagggcagtttgtgtgaataaccttcccattc |
117 |
Q |
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||||||||||||||| |||||||||| ||||| |||||| |||||||||| ||||| |||||||||||||||| | ||||||||||||||||||||| || |
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| T |
24202719 |
acagactcaaattatctagataaattgctgtaaaagacctatcacaaagtcggtgacaaagaaaatgaaagggaactttgtgtgaataaccttcccactc |
24202620 |
T |
|
| Q |
118 |
aatttcgctg--aatgaatgtgctttctcacgcaatgctacagctttaagagctgcatctttccatcgcttcaactgtgtttccatcatccccatttctt |
215 |
Q |
| |
|
||||||||| | ||||||||||||||||||||| | ||| |||| ||| |||||||||| |||||||||||||||| |||||||| |||||||||| |
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| T |
24202619 |
aatttcgctcttagtgaatgtgctttctcacgcaaggatacggcttcaagtgctgcatcttctcatcgcttcaactgtgcatccatcattcccatttctt |
24202520 |
T |
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| Q |
216 |
tagataaagctgaagatatcacacgaaactcagctttgatatcatttctccctgaaacgtttaatattgtaagaa |
290 |
Q |
| |
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||||||||| ||||| || |||||||||||| |||||||||| ||| |||||||||| |||||||||||||||| |
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| T |
24202519 |
tagataaagttgaagccataacacgaaactcaactttgatatcttttgtccctgaaacatttaatattgtaagaa |
24202445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 134; Significance: 1e-69; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 17 - 303
Target Start/End: Original strand, 29410876 - 29411164
Alignment:
| Q |
17 |
cacagactcaaattatttagataaatttctgtacaagaccaatcacaaagtaggtgagaaagaaaatgaaagggcagtttgtgtgaataaccttcccatt |
116 |
Q |
| |
|
|||| ||||||||||| |||| |||||||||| ||||| ||||||||||||| ||||||||||||||||||| | ||| || |||||||||| ||| | |
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| T |
29410876 |
cacaaactcaaattatcaagatgaatttctgtaaaagacttatcacaaagtaggcgagaaagaaaatgaaagggtactttatgcgaataacctttccact |
29410975 |
T |
|
| Q |
117 |
caattt--cgctgaatgaatgtgctttctcacgcaatgctacagctttaagagctgcatctttccatcgcttcaactgtgtttccatcatccccatttct |
214 |
Q |
| |
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|||||| | || | |||||| ||||||||||| |||| |||||||| |||||||||||||||||||||||||| ||| | |||||||||||||||||| |
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| T |
29410976 |
caatttttctcttagtgaatgcgctttctcacgtaatgatacagcttcaagagctgcatctttccatcgcttcacctgcgcgtccatcatccccatttct |
29411075 |
T |
|
| Q |
215 |
ttagataaagctgaagatatcacacgaaactcagctttgatatcatttctccctgaaacgtttaatattgtaagaaatgaggagatcca |
303 |
Q |
| |
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|||||||||||||||| |||||||||||||| |||||||| || ||||||||||||| ||||| | ||||||||| |||| |||||| |
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| T |
29411076 |
ttagataaagctgaagccatcacacgaaactcggctttgatgtcttttctccctgaaaaatttaacagtgtaagaaacgaggggatcca |
29411164 |
T |
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