View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16611_low_2 (Length: 778)
Name: NF16611_low_2
Description: NF16611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16611_low_2 |
 | |
|
| [»] scaffold0110 (1 HSPs) |
| | |
|
| [»] scaffold0572 (1 HSPs) |
| | |
|
| [»] scaffold2177 (1 HSPs) |
| | |
|
| [»] scaffold0014 (2 HSPs) |
| | |
|
| [»] scaffold0429 (1 HSPs) |
| | |
|
| [»] scaffold0573 (1 HSPs) |
| | |
|
| [»] scaffold0019 (1 HSPs) |
| | |
|
| [»] scaffold0177 (1 HSPs) |
| | |
|
| [»] scaffold0308 (1 HSPs) |
| | |
|
| [»] scaffold0051 (1 HSPs) |
| | |
|
| [»] scaffold0654 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 727; Significance: 0; HSPs: 33)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 727; E-Value: 0
Query Start/End: Original strand, 10 - 760
Target Start/End: Complemental strand, 24898807 - 24898057
Alignment:
| Q |
10 |
agcatagggaaaaataactcaattcaaatccagagttatcattattctatacatggtttttatctgactataaaagtaactgtcccagctacaagatgtc |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24898807 |
agcatagggaaaaataactcaattcaaatccagagttatcattattctatacatggtttttatctgactataaaagtaactgtcccagctacaagatgtc |
24898708 |
T |
|
| Q |
110 |
gaaacaagataacaaatcatattttcaactattattaacacatcagtatgaaccttacagcaactgttttttaccaaaactatgtttagtccaatttcct |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24898707 |
gaaacaagataacaaatcatattttcaactattattaacacatcagtatgaaccttacagcagctgttttttaccaaaactatgtttagtccaatttcct |
24898608 |
T |
|
| Q |
210 |
ttttatgtgtcatagactaacaatttgttatttcaaattcagaataacagattgtaactagaaaacaactcactagttttactcttacagtagacctcta |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24898607 |
ttttatgtgtcatagactaacaatttgttatttcaaattcagaataacagattgtaactagaaaacaactcactagttttactcttacagtagacctcta |
24898508 |
T |
|
| Q |
310 |
gaaagcatttcacggaggagtttcacggccttatcattcatgtcgtttttgaacaaagcacagataagagtttcgtaagttacaacatcaggcgtgcaac |
409 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| ||||||| |
|
|
| T |
24898507 |
gaaagcatttcacggaggagtttcacggccttatcattcatgtcgtttttgaacaaagcacggataagagttttgtaagttacaacatcaggtgtgcaac |
24898408 |
T |
|
| Q |
410 |
cattgtcttccatttcagacagtacaaacaatgcttcgtcaaacaagccctctttacaaagcccattaatcatgacattatgcatgcaagcattaaaatg |
509 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24898407 |
cattgtcttccatttcggacagtacaaacaatgcttcgtcaaacaagccctctttacaaagcccattaatcatgacattatgcatgcaagcattaaaatg |
24898308 |
T |
|
| Q |
510 |
atagcccttaaccataagatcccgataaacctcttgtgcatccttaagtcttccatttttgcatagtccatcaacaagcattgtgtatgtgaacatatct |
609 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24898307 |
atagcccttaaccataagatcccgataaacctcttgtgcatccttaagtcttccatttttgcatagtccatcaacaagcattgtgtatgtgaacatatct |
24898208 |
T |
|
| Q |
610 |
ggttcaattccccggtctttgatcttcttcaataacgcaattgccttgtcaacttgatggtttttaaacaatgcatccaataacgaggtgtaaatgatta |
709 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24898207 |
ggttcaattccccggtctttgatcttcttcaataacgcaattgccttgtcaacttgatggtttttaaacaatgcatccaataacgaggtgtaaatgatta |
24898108 |
T |
|
| Q |
710 |
tgtcagcttgttgacctctatcatgcatctcatctataagatcccaaacat |
760 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
24898107 |
tgtcagcttgttgacctctatcatgcatatcatctataagatcccaaacat |
24898057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 175; E-Value: 8e-94
Query Start/End: Original strand, 252 - 760
Target Start/End: Complemental strand, 30150017 - 30149507
Alignment:
| Q |
252 |
aataacagattgtaactagaaaacaactcac-tagttttactctt-acagtagacctctagaaagcatttcacggaggagtttcacggccttatcattca |
349 |
Q |
| |
|
||||||| |||||| |||||||||| || || ||||||||||||| | ||||||||||||| || ||||||||| | | |||||| ||||||||||| |
|
|
| T |
30150017 |
aataacaaattgtacctagaaaacatcttacctagttttactctttagagtagacctctagcaatcatttcacgaataaatttcaccgccttatcatttc |
30149918 |
T |
|
| Q |
350 |
tgtcgtttttgaacaaagcacagataagagtttcgtaagttacaacatcaggcgtgcaaccattgtcttccatttcagacagtacaaacaatgcttcgtc |
449 |
Q |
| |
|
||||| ||| |||||||||| |||| | |||| ||||||||| ||||||| |||||||| ||||||| ||||| || |||| |||||||||| || |
|
|
| T |
30149917 |
tgtcgctttcaaacaaagcacgaataataatttcataagttacaccatcaggagtgcaaccgttgtctttcatttttgagagtaaggacaatgcttcatc |
30149818 |
T |
|
| Q |
450 |
aaacaagccctctttacaaagcccattaatcatgacattatgcatgcaagcattaaaatgatagcccttaaccataagatcccgataaacctcttgtgca |
549 |
Q |
| |
|
|| || || ||||||||||||||||||||||| ||| ||| ||| ||||| ||||||||||| |||| | |||||||||||||||| ||||||||| |
|
|
| T |
30149817 |
gaaaaacccttctttacaaagcccattaatcatcacagtatacatcttagcatctaaatgatagcctttaatcgtaagatcccgataaacttcttgtgca |
30149718 |
T |
|
| Q |
550 |
tccttaagtcttccatttttgcatagtccatcaacaagcattgtgtatgtgaacatatctggttcaattccccggtctttgatcttcttcaataacgcaa |
649 |
Q |
| |
|
|||| ||||||||| ||||||||||||||| ||| ||| || ||||||| ||||| ||| | ||||||| ||||||||||||| || ||||| |||| |
|
|
| T |
30149717 |
tcctcaagtcttccgtttttgcatagtccaacaaaaagtatagtgtatgaatacatacttggctgaattccctggtctttgatcttttttaataatgcaa |
30149618 |
T |
|
| Q |
650 |
ttgccttgtcaacttgatggtttttaaacaatgcatccaataacgaggtgtaaatgattatgtcagcttgttgacctctatcatgcatctcatctataag |
749 |
Q |
| |
|
||||| ||||||| ||||||||||| ||||| |||| ||||| || ||||| |||||||||| | | |||||||||||||||||||||||||||||| |
|
|
| T |
30149617 |
ttgccctgtcaacctgatggtttttgcacaatccatcaaataaagaattgtaagtgattatgtcggttggttgacctctatcatgcatctcatctataaa |
30149518 |
T |
|
| Q |
750 |
atcccaaacat |
760 |
Q |
| |
|
||||||||||| |
|
|
| T |
30149517 |
atcccaaacat |
30149507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 160; E-Value: 7e-85
Query Start/End: Original strand, 294 - 760
Target Start/End: Complemental strand, 30053874 - 30053407
Alignment:
| Q |
294 |
ttacagtagacctctagaaagcatttcacggaggagtttcacggccttatcattcatgtcgtttttgaacaaagcacagataagagtttcgtaagttaca |
393 |
Q |
| |
|
||||||||||| |||| || ||||||||| || ||| ||| |||||||||||| ||||||||| |||||||||||| |||||||||||||| |||||| |
|
|
| T |
30053874 |
ttacagtagacgtctaacaatcatttcacgaagaagtgtcagcgccttatcattcttgtcgttttcgaacaaagcacaaataagagtttcgtatgttaca |
30053775 |
T |
|
| Q |
394 |
acatcaggcgtgcaaccattgtcttccatttcagacagtacaaacaatgcttcgtcaaacaagccctctttacaaagcccatt-aatcatgacattatgc |
492 |
Q |
| |
|
|||||||| ||||||| ||||||||||||| || |||| |||||||||| || || || |||||||||||||||||||| |||||| ||||||| | |
|
|
| T |
30053774 |
gcatcaggcatgcaaccgttgtcttccatttgtgagagtaaggacaatgcttcatcgaaaaaaccctctttacaaagcccatttaatcatcacattatac |
30053675 |
T |
|
| Q |
493 |
atgcaagcattaaaatgatagcccttaaccataagatcccgataaacctcttgtgcatccttaagtcttccatttttgcatagtccatcaacaagcattg |
592 |
Q |
| |
|
|| | | ||| || | ||||||||| | ||||||| |||||| | ||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
30053674 |
attctaatatttaatgggtagcccttacatagaagatcctgataaatcctttgtgcatccttaagtcttccatttttgcatagtccatcaacaagtgttg |
30053575 |
T |
|
| Q |
593 |
tgtatgtgaacatatctggttcaattccccggtctttgatcttcttcaataacgcaattgccttgtcaacttgatggtttttaaacaatgcatccaataa |
692 |
Q |
| |
|
||||||| ||||||||||| | |||||| |||||| |||||| | || |||||||||||||||||||| ||||||||||| ||||| ||| ||||| |
|
|
| T |
30053574 |
tgtatgtaaacatatctggctgaattccttcgtctttcatcttcgttaacaacgcaattgccttgtcaacctgatggtttttgcacaatccatataataa |
30053475 |
T |
|
| Q |
693 |
cgaggtgtaaatgattatgtcagcttgttgacctctatcatgcatctcatctataagatcccaaacat |
760 |
Q |
| |
|
|| ||||| ||||||| | |||| ||||||| | || || || |||||||||||||||||||||| |
|
|
| T |
30053474 |
agaattgtaagtgattatattagctggttgaccacaattataaatatcatctataagatcccaaacat |
30053407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 159; E-Value: 3e-84
Query Start/End: Original strand, 294 - 756
Target Start/End: Complemental strand, 24935113 - 24934651
Alignment:
| Q |
294 |
ttacagtagacctctagaaagcatttcacggaggagtttcacggccttatcattcatgtcgtttttgaacaaagcacagataagagtttcgtaagttaca |
393 |
Q |
| |
|
||||| || |||||||| || ||||||||| || |||||||| |||||||||||| | ||||| | ||||||||||| || ||||||||| ||||||||| |
|
|
| T |
24935113 |
ttacaatatacctctagcaatcatttcacgtagaagtttcaccgccttatcattcttatcgttctcgaacaaagcacggacaagagtttcataagttaca |
24935014 |
T |
|
| Q |
394 |
acatcaggcgtgcaaccattgtcttccatttcagacagtacaaacaatgcttcgtcaaacaagccctctttacaaagcccattaatcatgacattatgca |
493 |
Q |
| |
|
||||||| ||||||| ||||||||||||| |||| || ||| |||||| ||||||||||||||||||||||||||||| | ||| ||||||| || |
|
|
| T |
24935013 |
gcatcaggtatgcaaccgttgtcttccatttttgacactaaggacagtgcttcatcaaacaagccctctttacaaagcccattgaccatcacattataca |
24934914 |
T |
|
| Q |
494 |
tgcaagcattaaaatgatagcccttaaccataagatcccgataaacctcttgtgcatccttaagtcttccatttttgcatagtccatcaacaagcattgt |
593 |
Q |
| |
|
| | ||| |||||||||||||||| | ||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| || || |
|
|
| T |
24934913 |
ttttaacatctaaatgatagcccttaataagaagatcctgataaaccgcttgtgcatccttaagtcttccatttttgcatagtccatcaacaagtatagt |
24934814 |
T |
|
| Q |
594 |
gtatgtgaacatatctggttcaattccccggtctttgatcttcttcaataacgcaattgccttgtcaacttgatggtttttaaacaatgcatccaataac |
693 |
Q |
| |
|
||| || | |||| ||| | |||||| |||||||||||||| | | ||| | |||||||||||||| ||||||||||| |||| ||||||||||| |
|
|
| T |
24934813 |
gtaagtataaatatttggctgaattccttggtctttgatcttcgttattaatgtgattgccttgtcaacctgatggtttttgcacaaagcatccaataag |
24934714 |
T |
|
| Q |
694 |
gaggtgtaaatgattatgtcagcttgttgacctctatcatgcatctcatctataagatcccaa |
756 |
Q |
| |
|
|| ||||| |||| | || || |||| ||||||| ||||||||||| || |||||||||| |
|
|
| T |
24934713 |
gaactgtaagtgatcacatcggcaggttggcctctattatgcatctcatttacaagatcccaa |
24934651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 158; E-Value: 1e-83
Query Start/End: Original strand, 244 - 760
Target Start/End: Original strand, 29953197 - 29953713
Alignment:
| Q |
244 |
aaattcagaataacagattgtaactagaaaacaactcac-tagttttactcttacagtagacctctagaaagcatttcacggaggagtttcacggcctta |
342 |
Q |
| |
|
||||||| ||||||| ||| ||||| |||| || ||||| ||||||||| ||| |||||||||||| || ||||||||| || ||||| || |||||| |
|
|
| T |
29953197 |
aaattcaaaataacaaattttaacttgaaagcatctcacctagttttaca-ttatagtagacctctaacaatcatttcacgaagaagtttaacagcctta |
29953295 |
T |
|
| Q |
343 |
tcattcatgtcgtttttgaacaaagcacagataagagtttcgtaagttacaacatcaggcgtgcaaccattgtcttccatttcagacagtacaaacaatg |
442 |
Q |
| |
|
|||||| ||| ||||| |||||||||||| |||||||||| |||||||| |||| || |||||||||||||||||||||| ||||||| |||||| |
|
|
| T |
29953296 |
tcattcttgttgttttcgaacaaagcacaaataagagtttggtaagttatcgcatctggggtgcaaccattgtcttccatttttgacagtaaggacaatg |
29953395 |
T |
|
| Q |
443 |
cttcgtcaaacaagccctctttacaaagcccattaatcatgacattatgcatgcaagcattaaaatgatagcccttaaccataagatcccgataaacctc |
542 |
Q |
| |
|
| |||||||| || || |||||||||| | |||||| ||| ||||||| ||| || |||| ||| |||| |||||| || |||||| |||||| ||| |
|
|
| T |
29953396 |
cctcgtcaaataaaccttctttacaaaactcattaaccatcacattatacatcgaaacatttaaaggataacccttagtcagaagatcatgataaatctc |
29953495 |
T |
|
| Q |
543 |
ttgtgcatccttaagtcttccatttttgcatagtccatcaacaagcattgtgtatgtgaacatatctggttcaattccccggtctttgatcttcttcaat |
642 |
Q |
| |
|
| |||||||| ||||||||||||||||||||| ||||||||||| || |||||||| |||||| ||| | ||| || ||||||| |||||||| ||| |
|
|
| T |
29953496 |
tcgtgcatccgcaagtcttccatttttgcatagcccatcaacaagtatagtgtatgtatacatatttggctgaatcccttggtctttcatcttctttaat |
29953595 |
T |
|
| Q |
643 |
aacgcaattgccttgtcaacttgatggtttttaaacaatgcatccaataacgaggtgtaaatgattatgtcagcttgttgacctctatcatgcatctcat |
742 |
Q |
| |
|
|| ||||| ||||||||||| ||||||||||| |||| ||||||||||| || ||||| |||| | | | | |||||| ||||| ||||||||||| |
|
|
| T |
29953596 |
aatgcaatcgccttgtcaacctgatggtttttgcacaaagcatccaataaagaattgtaagtgatcacattaaccggttgacatctattatgcatctcat |
29953695 |
T |
|
| Q |
743 |
ctataagatcccaaacat |
760 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
29953696 |
ctataagatcccaaacat |
29953713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 147; E-Value: 4e-77
Query Start/End: Original strand, 240 - 760
Target Start/End: Complemental strand, 30135626 - 30135105
Alignment:
| Q |
240 |
tttcaaattcagaataacagattgtaactagaaaacaactca-ctagttttactcttacagtagacctctagaaagcatttcacggaggagtttcacggc |
338 |
Q |
| |
|
||||||||||| || | || ||||||||| |||| || |||| ||||||||| |||||||||||||||| || |||||||| || |||||||| || |
|
|
| T |
30135626 |
tttcaaattcaaaaaagcaaattgtaacttgaaagcatctcaactagttttaga-ttacagtagacctctatcaatcatttcacaaagaagtttcactgc |
30135528 |
T |
|
| Q |
339 |
cttatcattcatgtcgtttttgaacaaagcacagataagagtttcgtaagttacaacatcaggcgtgcaaccattgtcttccatttcagacagtacaaac |
438 |
Q |
| |
|
|||||||||| | | |||||||| ||||||| ||||| | |||||||||||||||||||||| |||||| |||| |||||||| |||| || || |
|
|
| T |
30135527 |
cttatcattcttaacatttttgaataaagcacggataacaatttcgtaagttacaacatcaggggtgcaattgttgtgttccatttttgacaatatggac |
30135428 |
T |
|
| Q |
439 |
aatgcttcgtcaaacaagccctctttacaaagcccattaatcatgacattatgcatgcaagcattaaaatgatagcccttaaccataagatcccgataaa |
538 |
Q |
| |
|
|||||||| |||||||| ||||||||||| |||| ||||| ||| ||||||| ||| | ||| |||||||| ||||||| || |||||| |||||| |
|
|
| T |
30135427 |
aatgcttcatcaaacaaaccctctttacagagccaattaaccatcacattatacattataacatctaaatgatatcccttaatcagaagatcttgataaa |
30135328 |
T |
|
| Q |
539 |
cctcttgtgcatccttaagtcttccatttttgcatagtccatcaacaagcattgtgtatgtgaacatatctggttcaattccccggtctttgatcttctt |
638 |
Q |
| |
|
|| ||| ||||||||||||| ||||||||||||||| |||||||||||| | ||||||||| ||| || ||| | ||| || |||||||||||||| | |
|
|
| T |
30135327 |
ccgcttttgcatccttaagttttccatttttgcatattccatcaacaagtaatgtgtatgtatacaaatttggctgaataccttggtctttgatcttcgt |
30135228 |
T |
|
| Q |
639 |
caataacgcaattgccttgtc-aacttgatggtttttaaacaatgcatccaataacgaggtgtaaatgattatgtcagcttgttgacctctatcatgcat |
737 |
Q |
| |
|
||||| | ||||||||||| ||| ||||||||||| |||| ||||||||||| || ||||| |||| | | ||| |||||||||| |||||||| |
|
|
| T |
30135227 |
taataatgtgattgccttgtcaaacctgatggtttttgcacaaagcatccaataaagaattgtaagtgatcacattagcaggttgacctctttcatgcat |
30135128 |
T |
|
| Q |
738 |
ctcatctataagatcccaaacat |
760 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
30135127 |
ctcatctataagatcccaaacat |
30135105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 146; E-Value: 2e-76
Query Start/End: Original strand, 260 - 756
Target Start/End: Original strand, 24738713 - 24739210
Alignment:
| Q |
260 |
attgtaactagaaaacaactcac-tagttttactcttacagtagacctctagaaagcatttcacggaggagtttcacggccttatcattcatgtcgtttt |
358 |
Q |
| |
|
|||||||||| ||| || ||||| | |||||| ||||| ||||||||||||| || ||||||||| || |||| ||| |||||||||||||||||||||| |
|
|
| T |
24738713 |
attgtaactaaaaagcatctcaccttgttttattcttatagtagacctctagcaatcatttcacgaagaagttccactgccttatcattcatgtcgtttt |
24738812 |
T |
|
| Q |
359 |
tgaacaaagcacagataagagtttcgtaagttacaacatcaggcgtgcaaccattgtcttccatttcagacagtacaaacaatgcttcgtcaaacaagcc |
458 |
Q |
| |
|
|||||||||| ||||||| ||||| |||||||| || ||| |||||||||||||||||||||| ||||||| ||||||||| || ||||||| |
|
|
| T |
24738813 |
caaacaaagcacggataagaatttcgaaagttacaggattaggggtgcaaccattgtcttccatttttgacagtaaggacaatgctttatcgaacaagct |
24738912 |
T |
|
| Q |
459 |
ctctttacaaagcccattaatcatgacattatgcatgcaagcattaaaatgatagcccttaaccataagatcccgataaacctcttgtgcatccttaagt |
558 |
Q |
| |
|
||||| |||||| |||||||||| ||| ||| ||| | | | ||||||||||| |||| || |||| | ||||||||||||| || ||||| ||| |
|
|
| T |
24738913 |
ctcttaacaaaggccattaatcagaacagtatacatcctcacgtctaaatgatagcctttaatcaaaagaatctgataaacctcttgcgcgtccttgagt |
24739012 |
T |
|
| Q |
559 |
cttccatttttgcatagtccatcaacaagcattgtgtatgtgaacatatctggttcaattccccggtctttgatcttcttcaataacgcaattgccttgt |
658 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||||||||||| | ||||| || | |||||| |||||||||||||| | | ||| | |||||||||| |
|
|
| T |
24739013 |
cttccatttttgcataaaccatcaacaagtattgtgtatgtatatatatccggctgaattccttggtctttgatcttcgtaagtaatgtgattgccttgt |
24739112 |
T |
|
| Q |
659 |
caacttgatggtttttaaacaatgcatccaataacgaggtgtaaatgattatgtcagcttgttgacctctatcatgcatctcatctataagatcccaa |
756 |
Q |
| |
|
|||| ||||||||||| |||| ||||||||||| || ||||| |||| | ||||| |||| ||||||| ||||||||||| || |||||||||| |
|
|
| T |
24739113 |
caacctgatggtttttgcacaaagcatccaataaggaattgtaagtgatcacatcagcaggttggcctctattatgcatctcatttacaagatcccaa |
24739210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 146; E-Value: 2e-76
Query Start/End: Original strand, 244 - 760
Target Start/End: Original strand, 29949400 - 29949916
Alignment:
| Q |
244 |
aaattcagaataacagattgtaactagaaaacaactcac-tagttttactcttacagtagacctctagaaagcatttcacggaggagtttcacggcctta |
342 |
Q |
| |
|
||||||| ||||||| ||| ||||| |||| || ||||| ||||||||| ||| |||||||||||| || ||||||||| || ||||| || |||||| |
|
|
| T |
29949400 |
aaattcaaaataacaaattttaacttgaaagcatctcacctagttttaca-ttatagtagacctctaacaatcatttcacgaagaagtttaacagcctta |
29949498 |
T |
|
| Q |
343 |
tcattcatgtcgtttttgaacaaagcacagataagagtttcgtaagttacaacatcaggcgtgcaaccattgtcttccatttcagacagtacaaacaatg |
442 |
Q |
| |
|
|||||| ||| ||||| |||||||||||| |||||||||| |||||||| ||| || |||||||||||||||||||||| ||||||| |||||| |
|
|
| T |
29949499 |
tcattcttgttgttttcgaacaaagcacaaataagagtttggtaagttatcgcatttggggtgcaaccattgtcttccatttttgacagtaaggacaatg |
29949598 |
T |
|
| Q |
443 |
cttcgtcaaacaagccctctttacaaagcccattaatcatgacattatgcatgcaagcattaaaatgatagcccttaaccataagatcccgataaacctc |
542 |
Q |
| |
|
| |||||||| || || |||||||||| | |||||| ||| ||||||| ||| || |||| ||| |||| |||||| || |||||| |||||| ||| |
|
|
| T |
29949599 |
cctcgtcaaataaaccttctttacaaaactcattaaccatcacattatacatcgaaacatttaaaggataacccttagtcagaagatcatgataaatctc |
29949698 |
T |
|
| Q |
543 |
ttgtgcatccttaagtcttccatttttgcatagtccatcaacaagcattgtgtatgtgaacatatctggttcaattccccggtctttgatcttcttcaat |
642 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||| || |||||||| |||||| ||| | |||||| ||||||| ||||| || ||| |
|
|
| T |
29949699 |
ttgtgcatcctcaagtcttccatttttgcatagtccatcaacaagtatagtgtatgtatacatatttggctgaattccttggtcttttatcttttttaat |
29949798 |
T |
|
| Q |
643 |
aacgcaattgccttgtcaacttgatggtttttaaacaatgcatccaataacgaggtgtaaatgattatgtcagcttgttgacctctatcatgcatctcat |
742 |
Q |
| |
|
|| ||||| ||||||||||| ||||||||||| | || ||||| ||||| || ||||| |||| | | ||| |||| ||| ||||||||||||| |
|
|
| T |
29949799 |
aatgcaatcgccttgtcaacctgatggtttttgcataaagcatctaataaagaattgtaagtgatcacattagcaggttggcctatatcatgcatctcga |
29949898 |
T |
|
| Q |
743 |
ctataagatcccaaacat |
760 |
Q |
| |
|
| | |||||||||||||| |
|
|
| T |
29949899 |
caagaagatcccaaacat |
29949916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 285 - 756
Target Start/End: Original strand, 21160169 - 21160640
Alignment:
| Q |
285 |
gttttactcttacagtagacctctagaaagcatttcacggaggagtttcacggccttatcattcatgtcgtttttgaacaaagcacagataagagtttcg |
384 |
Q |
| |
|
|||||| ||||| |||||| ||||| || ||||| ||| || |||| ||| |||||||||||||||||||||| |||||||||| ||||||| ||||| |
|
|
| T |
21160169 |
gttttattcttatagtagatctctaacaatcattttacgaagaagttccactgccttatcattcatgtcgttttcaaacaaagcacggataagaatttcg |
21160268 |
T |
|
| Q |
385 |
taagttacaacatcaggcgtgcaaccattgtcttccatttcagacagtacaaacaatgcttcgtcaaacaagccctctttacaaagcccattaatcatga |
484 |
Q |
| |
|
|||||||| || ||| |||||||||||||||| ||||| ||||||| | ||||||| || ||||||| |||||||||||| ||||||||||| | |
|
|
| T |
21160269 |
aaagttacaggattaggggtgcaaccattgtctttcatttttgacagtaaggataatgctttatcgaacaagctctctttacaaaggccattaatcataa |
21160368 |
T |
|
| Q |
485 |
cattatgcatgcaagcattaaaatgatagcccttaaccataagatcccgataaacctcttgtgcatccttaagtcttccatttttgcatagtccatcaac |
584 |
Q |
| |
|
|| ||| ||| | | | ||||||||||| |||| || |||| | |||| |||||||| || ||||||||||||||||||||||||| |||||||| |
|
|
| T |
21160369 |
cagtatacatcctcacgtctaaatgatagcctttaatcaaaagaatctgatagacctcttgcgcgtccttaagtcttccatttttgcataaaccatcaac |
21160468 |
T |
|
| Q |
585 |
aagcattgtgtatgtgaacatatctggttcaattccccggtctttgatcttcttcaataacgcaattgccttgtcaacttgatggtttttaaacaatgca |
684 |
Q |
| |
|
||| ||||||||||| | |||| || | |||||| ||||||| |||||| | ||||| | |||||| ||||||| ||||||||||| |||| ||| |
|
|
| T |
21160469 |
aagtattgtgtatgtatatatatacggctgaattccttggtcttttatcttcgtaaataatgtgattgccatgtcaacctgatggtttttgcacaaagca |
21160568 |
T |
|
| Q |
685 |
tccaataacgaggtgtaaatgattatgtcagcttgttgacctctatcatgcatctcatctataagatcccaa |
756 |
Q |
| |
|
|||||||| || ||||| |||| | ||||| |||| ||||||| ||||||||||| || |||||||||| |
|
|
| T |
21160569 |
tccaataaggaattgtaagtgatcacatcagcaggttggcctctattatgcatctcatttacaagatcccaa |
21160640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 108; E-Value: 8e-54
Query Start/End: Original strand, 505 - 760
Target Start/End: Complemental strand, 24942435 - 24942180
Alignment:
| Q |
505 |
aaatgatagcccttaaccataagatcccgataaacctcttgtgcatccttaagtcttccatttttgcatagtccatcaacaagcattgtgtatgtgaaca |
604 |
Q |
| |
|
|||||||||||||||| | ||||| | |||||||| ||||||||| ||||| |||||||||||||||||||||||||||||| || ||||| || ||| |
|
|
| T |
24942435 |
aaatgatagcccttaaaaagaagatactgataaaccgcttgtgcatgcttaaatcttccatttttgcatagtccatcaacaagtatagtgtaagtataca |
24942336 |
T |
|
| Q |
605 |
tatctggttcaattccccggtctttgatcttcttcaataacgcaattgccttgtcaacttgatggtttttaaacaatgcatccaataacgaggtgtaaat |
704 |
Q |
| |
|
||| ||| | |||||| |||||||||||||| | ||||| | ||||||||||||||| ||||||||||| ||||| ||||||||||| || |||| | |
|
|
| T |
24942335 |
tatttggctgaattccttggtctttgatcttcattaataatgtaattgccttgtcaacctgatggtttttgaacaaagcatccaataaggaattgtacgt |
24942236 |
T |
|
| Q |
705 |
gattatgtcagcttgttgacctctatcatgcatctcatctataagatcccaaacat |
760 |
Q |
| |
|
||| | ||||| |||| ||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
24942235 |
gatcacatcagcaggttggcctctattatgcatctcatctataagatcccaaacat |
24942180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 293 - 674
Target Start/End: Original strand, 15726741 - 15727122
Alignment:
| Q |
293 |
cttacagtagacctctagaaagcatttcacggaggagtttcacggccttatcattcatgtcgtttttgaacaaagcacagataagagtttcgtaagttac |
392 |
Q |
| |
|
|||||| ||||||||||| || ||||||||| || |||| | | |||||||||||| || ||||| || | ||||| | ||| | ||| |||||||| |
|
|
| T |
15726741 |
cttacaatagacctctagcaatcatttcacgtagaagttgctctgccttatcattctcatcatttttaaagagagcacggttaattggttcataagttac |
15726840 |
T |
|
| Q |
393 |
aacatcaggcgtgcaaccattgtcttccatttcagacagtacaaacaatgcttcgtcaaacaagccctctttacaaagcccattaatcatgacattatgc |
492 |
Q |
| |
|
| |||| || ||||||||||||||||||||| ||||| | | ||||| ||||| ||||||| | |||||| ||||| ||||| | | ||| |
|
|
| T |
15726841 |
agcatctggaatgcaaccattgtcttccatttttgacagcagggtcgtagcttcatcaaataagccctttgaacaaagaccattgatcataatactatat |
15726940 |
T |
|
| Q |
493 |
atgcaagcattaaaatgatagcccttaaccataagatcccgataaacctcttgtgcatccttaagtcttccatttttgcatagtccatcaacaagcattg |
592 |
Q |
| |
|
||||| |||| |||| |||||| |||| || |||||| || ||| | |||||||||||||||||||||| | ||||||||||||||| | ||| || |
|
|
| T |
15726941 |
gtgcaaacatttaaattatagcctttaatcaaaagatcttgaaaaatcacttgtgcatccttaagtcttccttgtttgcatagtccatcgataagtatac |
15727040 |
T |
|
| Q |
593 |
tgtatgtgaacatatctggttcaattccccggtctttgatcttcttcaataacgcaattgccttgtcaacttgatggttttt |
674 |
Q |
| |
|
| ||||| ||||||||| || ||| ||| |||||||||| ||||| | ||| |||||||||||||||| ||||||||||| |
|
|
| T |
15727041 |
tatatgtatacatatctgattgaatgccctggtctttgattttcttgactaatacaattgccttgtcaacgtgatggttttt |
15727122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 544 - 743
Target Start/End: Complemental strand, 29887493 - 29887294
Alignment:
| Q |
544 |
tgtgcatccttaagtcttccatttttgcatagtccatcaacaagcattgtgtatgtgaacatatctggttcaattccccggtctttgatcttcttcaata |
643 |
Q |
| |
|
|||||||||| ||||||||| ||| || |||||||||| ||| || ||||||||| |||||| |||| ||| ||| ||||||| | || | |||| |
|
|
| T |
29887493 |
tgtgcatcctctagtcttccacctttacacagtccatcaataagaatagtgtatgtgtacatatttggtcgaataccctggtctttcaaatttgttaata |
29887394 |
T |
|
| Q |
644 |
acgcaattgccttgtcaacttgatggtttttaaacaatgcatccaataacgaggtgtaaatgattatgtcagcttgttgacctctatcatgcatctcatc |
743 |
Q |
| |
|
||||||||||||||||||| ||||||||||| | || ||||| ||||| || ||||| | ||||| |||| | ||||||||||||||||||||||||| |
|
|
| T |
29887393 |
acgcaattgccttgtcaacctgatggtttttgcataaagcatctaataaagaactgtaagtaattatatcaggtggttgacctctatcatgcatctcatc |
29887294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 292 - 674
Target Start/End: Original strand, 15714543 - 15714925
Alignment:
| Q |
292 |
tcttacagtagacctctagaaagcatttcacggaggagtttcacggccttatcattcatgtcgtttttgaacaaagcacagataagagtttcgtaagtta |
391 |
Q |
| |
|
|||||||| ||||||| || || ||||||||| || |||||| | |||||||||||| || ||||| || | ||||| ||||| ||||| ||||||| |
|
|
| T |
15714543 |
tcttacagaagacctcgagcaatcatttcacgcagaagtttctctgccttatcattctcatcatttttaaagagagcacggataattgtttcataagtta |
15714642 |
T |
|
| Q |
392 |
caacatcaggcgtgcaaccattgtcttccatttcagacagtacaaacaatgcttcgtcaaacaagccctctttacaaagcccattaatcatgacattatg |
491 |
Q |
| |
|
|| |||| || ||||||||||||||||||||| ||||| | || |||||| ||||| ||||||||| |||||| ||||| ||||| | | | | |
|
|
| T |
15714643 |
cagcatctggaatgcaaccattgtcttccatttttgacagcagggtcactgcttcatcaaataagccctctaaacaaagaccattgatcataatactcta |
15714742 |
T |
|
| Q |
492 |
catgcaagcattaaaatgatagcccttaaccataagatcccgataaacctcttgtgcatccttaagtcttccatttttgcatagtccatcaacaagcatt |
591 |
Q |
| |
|
| ||| || | |||| |||||| ||| || ||||| | ||| | ||||||| | | |||||||||| | ||||||||||||||| | ||| || |
|
|
| T |
15714743 |
tgtccaaacagttaaattatagcctataatcaaaagatgtttaaaaatcacttgtgcgttcctaagtcttccttctttgcatagtccatcgataaggatg |
15714842 |
T |
|
| Q |
592 |
gtgtatgtgaacatatctggttcaattccccggtctttgatcttcttcaataacgcaattgccttgtcaacttgatggttttt |
674 |
Q |
| |
|
|||||||| ||||| |||||||||||| |||||||||||||||| | || ||||||||||||||||| ||||| ||||| |
|
|
| T |
15714843 |
ttgtatgtggtcatatttggttcaattccttggtctttgatcttcttgaccaaagcaattgccttgtcaacgtgatgattttt |
15714925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 458 - 635
Target Start/End: Original strand, 30577485 - 30577662
Alignment:
| Q |
458 |
cctctttacaaagcccattaatcatgacattatgcatgcaagcattaaaatgatagcccttaaccataagatcccgataaacctcttgtgcatccttaag |
557 |
Q |
| |
|
||||| ||||||||||||||||||| ||| | | || | | ||| ||| |||||||||||| || |||||| || ||| |||||||||||||||||| |
|
|
| T |
30577485 |
cctctctacaaagcccattaatcatcacagtgtacagtctaacatctaaacgatagcccttaatcagaagatcatgaaaaatctcttgtgcatccttaag |
30577584 |
T |
|
| Q |
558 |
tcttccatttttgcatagtccatcaacaagcattgtgtatgtgaacatatctggttcaattccccggtctttgatctt |
635 |
Q |
| |
|
||||||||||||||| |||||||||||||| || ||||||| | ||||| ||| |||| ||| |||||||||||| |
|
|
| T |
30577585 |
tcttccatttttgcacagtccatcaacaagtatattgtatgtaaccatatttggctcaaatcctttgtctttgatctt |
30577662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 544 - 691
Target Start/End: Original strand, 29348401 - 29348548
Alignment:
| Q |
544 |
tgtgcatccttaagtcttccatttttgcatagtccatcaacaagcattgtgtatgtgaacatatctggttcaattccccggtctttgatcttcttcaata |
643 |
Q |
| |
|
||||||||||| ||||||||| ||| || | |||||||| ||| || ||||||||| |||||||||||| |||||| ||||| |||||| | || | |
|
|
| T |
29348401 |
tgtgcatcctttagtcttccacctttacacaatccatcaataagaatagtgtatgtgtacatatctggttgaattccttcatctttcatcttcgttaaca |
29348500 |
T |
|
| Q |
644 |
acgcaattgccttgtcaacttgatggtttttaaacaatgcatccaata |
691 |
Q |
| |
|
||||||||||||||||||| ||||||||||| | || |||||||||| |
|
|
| T |
29348501 |
acgcaattgccttgtcaacctgatggtttttgcataaagcatccaata |
29348548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 545 - 691
Target Start/End: Original strand, 29366225 - 29366371
Alignment:
| Q |
545 |
gtgcatccttaagtcttccatttttgcatagtccatcaacaagcattgtgtatgtgaacatatctggttcaattccccggtctttgatcttcttcaataa |
644 |
Q |
| |
|
||||||||| || |||||||||||||||||||||||||| | |||||||||| | |||||||||| |||||| ||||| |||||| | || || |
|
|
| T |
29366225 |
gtgcatcctctagccttccatttttgcatagtccatcaactaatgttgtgtatgtacaaatatctggttgaattccttcatctttcatcttcgttaacaa |
29366324 |
T |
|
| Q |
645 |
cgcaattgccttgtcaacttgatggtttttaaacaatgcatccaata |
691 |
Q |
| |
|
|||||||||||||||||| ||||||||||| | || |||||||||| |
|
|
| T |
29366325 |
cgcaattgccttgtcaacctgatggtttttgcataaagcatccaata |
29366371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 543 - 743
Target Start/End: Original strand, 28926349 - 28926549
Alignment:
| Q |
543 |
ttgtgcatccttaagtcttccatttttgcatagtccatcaacaagcattgtgtatgtgaacatatctggttcaattccccggtctttgatcttcttcaat |
642 |
Q |
| |
|
||||||||||| |||||||| ||| || ||||||| || ||| || ||||||||| |||||| ||||| || ||| ||||||| | || | ||| |
|
|
| T |
28926349 |
ttgtgcatcctccggtcttccacctttacacagtccattaataagaatagtgtatgtgtacatatttggttgaagaccctggtctttcaattttgttaat |
28926448 |
T |
|
| Q |
643 |
aacgcaattgccttgtcaacttgatggtttttaaacaatgcatccaataacgaggtgtaaatgattatgtcagcttgttgacctctatcatgcatctcat |
742 |
Q |
| |
|
|| ||||||||||||||||| ||||||||||| | || |||||||||| || ||||| | ||||| |||| | |||||||||||||||||||||||| |
|
|
| T |
28926449 |
aatgcaattgccttgtcaacatgatggtttttgcataaagcatccaatagagaactgtaagtaattatatcaggtggttgacctctatcatgcatctcat |
28926548 |
T |
|
| Q |
743 |
c |
743 |
Q |
| |
|
| |
|
|
| T |
28926549 |
c |
28926549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #18
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 545 - 743
Target Start/End: Complemental strand, 29898268 - 29898074
Alignment:
| Q |
545 |
gtgcatccttaagtcttccatttttgcatagtccatcaacaagcattgtgtatgtgaacatatctggttcaattccccggtctttgatcttcttcaataa |
644 |
Q |
| |
|
||||||||| |||||||||||||| ||||||||||||||||| |||||||||| | |||||||| | ||||| |||||| ||||| | || || |
|
|
| T |
29898268 |
gtgcatcctctagtcttccatttttccatagtccatcaacaagtgttgtgtatgtacaaatatctggctgaattc----gtctttaatctttgttaacaa |
29898173 |
T |
|
| Q |
645 |
cgcaattgccttgtcaacttgatggtttttaaacaatgcatccaataacgaggtgtaaatgattatgtcagcttgttgacctctatcatgcatctcatc |
743 |
Q |
| |
|
|| |||||||||||||| ||||||||||| | || |||| ||||| || |||| | ||||| | || | ||||||||||||||||||||||||| |
|
|
| T |
29898172 |
cgtgattgccttgtcaacctgatggtttttgcataaagcattcaatatagaactgtacgtaattatattaggtggttgacctctatcatgcatctcatc |
29898074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #19
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 592 - 743
Target Start/End: Complemental strand, 24731003 - 24730852
Alignment:
| Q |
592 |
gtgtatgtgaacatatctggttcaattccccggtctttgatcttcttcaataacgcaattgccttgtcaacttgatggtttttaaacaatgcatccaata |
691 |
Q |
| |
|
||||||||| ||||||||||| ||| ||| ||||||| | || | ||||| ||||||||||||||||| ||||||||||| | || |||||||||| |
|
|
| T |
24731003 |
gtgtatgtgtacatatctggtcgaataccctggtctttcaaatttgttaataatgcaattgccttgtcaacatgatggtttttgcataaagcatccaata |
24730904 |
T |
|
| Q |
692 |
acgaggtgtaaatgattatgtcagcttgttgacctctatcatgcatctcatc |
743 |
Q |
| |
|
|| ||||| | ||||| | || | ||||||||||||||||||||||||| |
|
|
| T |
24730903 |
tagaattgtaagttattatattaggtggttgacctctatcatgcatctcatc |
24730852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #20
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 544 - 691
Target Start/End: Complemental strand, 29866845 - 29866698
Alignment:
| Q |
544 |
tgtgcatccttaagtcttccatttttgcatagtccatcaacaagcattgtgtatgtgaacatatctggttcaattccccggtctttgatcttcttcaata |
643 |
Q |
| |
|
|||||||||| ||||||||| ||| || |||||||||| ||| || ||||||||| |||||| |||| ||| ||| ||||||| | || | |||| |
|
|
| T |
29866845 |
tgtgcatcctctagtcttccacctttacacagtccatcaataagaatagtgtatgtgtacatatttggtcgaataccctggtctttcaaatttgttaata |
29866746 |
T |
|
| Q |
644 |
acgcaattgccttgtcaacttgatggtttttaaacaatgcatccaata |
691 |
Q |
| |
|
||||||||||||||||||| ||||||||||| | || |||||||||| |
|
|
| T |
29866745 |
acgcaattgccttgtcaacctgatggtttttgcataaagcatccaata |
29866698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #21
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 646 - 742
Target Start/End: Original strand, 30126960 - 30127056
Alignment:
| Q |
646 |
gcaattgccttgtcaacttgatggtttttaaacaatgcatccaataacgaggtgtaaatgattatgtcagcttgttgacctctatcatgcatctcat |
742 |
Q |
| |
|
|||||||| |||||||| ||||||||||| | || |||||||||| || ||||||| ||||| |||| | |||||||||||||||||||||||| |
|
|
| T |
30126960 |
gcaattgctttgtcaacctgatggtttttgcataaagcatccaatatagaattgtaaataattatatcaggtggttgacctctatcatgcatctcat |
30127056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #22
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 592 - 743
Target Start/End: Original strand, 29357830 - 29357981
Alignment:
| Q |
592 |
gtgtatgtgaacatatctggttcaattccccggtctttgatcttcttcaataacgcaattgccttgtcaacttgatggtttttaaacaatgcatccaata |
691 |
Q |
| |
|
||||||||| |||||| ||||| ||| ||| ||| ||| |||| | |||||||||||||| |||||||| ||||||||||| | || |||||||||| |
|
|
| T |
29357830 |
gtgtatgtgtacatatttggttgaataccctggtttttcatctgtgttaataacgcaattgcattgtcaacctgatggtttttgcataaagcatccaata |
29357929 |
T |
|
| Q |
692 |
acgaggtgtaaatgattatgtcagcttgttgacctctatcatgcatctcatc |
743 |
Q |
| |
|
|| ||||| | | ||| | || | ||||||||||||||||||||||||| |
|
|
| T |
29357930 |
tagaactgtaagtaactatattaggtggttgacctctatcatgcatctcatc |
29357981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #23
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 556 - 691
Target Start/End: Complemental strand, 29835399 - 29835264
Alignment:
| Q |
556 |
agtcttccatttttgcatagtccatcaacaagcattgtgtatgtgaacatatctggttcaattccccggtctttgatcttcttcaataacgcaattgcct |
655 |
Q |
| |
|
||||||||| ||| || |||||||||| ||| || ||||||||| |||||| |||| ||| ||| ||||||| | || | |||||||||||||||| |
|
|
| T |
29835399 |
agtcttccacctttacacagtccatcaataagaatagtgtatgtgtacatatttggtcgaataccctggtctttcaattttgttaataacgcaattgcct |
29835300 |
T |
|
| Q |
656 |
tgtcaacttgatggtttttaaacaatgcatccaata |
691 |
Q |
| |
|
||||||| ||||||||||| | || |||||||||| |
|
|
| T |
29835299 |
tgtcaacctgatggtttttgcataaagcatccaata |
29835264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #24
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 556 - 691
Target Start/End: Complemental strand, 29894737 - 29894602
Alignment:
| Q |
556 |
agtcttccatttttgcatagtccatcaacaagcattgtgtatgtgaacatatctggttcaattccccggtctttgatcttcttcaataacgcaattgcct |
655 |
Q |
| |
|
||||||||| ||| || |||||||||| ||| || ||||||||| |||||| |||| ||| ||| ||||||| | || | |||||||||||||||| |
|
|
| T |
29894737 |
agtcttccacctttacacagtccatcaataagaatagtgtatgtgtacatatttggtcgaataccctggtctttcaattttgttaataacgcaattgcct |
29894638 |
T |
|
| Q |
656 |
tgtcaacttgatggtttttaaacaatgcatccaata |
691 |
Q |
| |
|
||||||| ||||||||||| | || |||||||||| |
|
|
| T |
29894637 |
tgtcaacctgatggtttttgcataaagcatccaata |
29894602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #25
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 550 - 675
Target Start/End: Original strand, 16701964 - 16702089
Alignment:
| Q |
550 |
tccttaagtcttccatttttgcatagtccatcaacaagcattgtgtatgtgaacatatctggttcaattccccggtctttgatcttcttcaataacgcaa |
649 |
Q |
| |
|
|||||||||||||| | ||||||||||||||||||||| | | |||||| ||||||||||| ||| || ||||||| | || || | || |||| |
|
|
| T |
16701964 |
tccttaagtcttccttgtttgcatagtccatcaacaagtgtattatatgtgtgcatatctggttgaatgccttggtctttaaaattgttgaccaatgcaa |
16702063 |
T |
|
| Q |
650 |
ttgccttgtcaacttgatggttttta |
675 |
Q |
| |
|
||||||||||||| |||||||||||| |
|
|
| T |
16702064 |
ttgccttgtcaacatgatggttttta |
16702089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #26
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 545 - 738
Target Start/End: Original strand, 24263556 - 24263749
Alignment:
| Q |
545 |
gtgcatccttaagtcttccatttttgcatagtccatcaacaagcattgtgtatgtgaacatatctggttcaattccccggtctttgatcttcttcaataa |
644 |
Q |
| |
|
||||||||| ||||||||| ||| || | |||||||| ||| || ||||||||| |||||| |||| ||| ||| ||||||| | || | ||||| |
|
|
| T |
24263556 |
gtgcatcctctagtcttccacctttacacaatccatcaataagaatagtgtatgtgtacatatttggtcgaataccctggtctttcaattttattaataa |
24263655 |
T |
|
| Q |
645 |
cgcaattgccttgtcaacttgatggtttttaaacaatgcatccaataacgaggtgtaaatgattatgtcagcttgttgacctctatcatgcatc |
738 |
Q |
| |
|
||||||||||||||||| |||||||||| | || |||||||||| || |||| ||||||| |||| |||||| |||| |||||||||| |
|
|
| T |
24263656 |
tgcaattgccttgtcaaccagatggtttttgcataaggcatccaatatagaactgtacgtgattatatcaggttgttgccctcgatcatgcatc |
24263749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #27
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 592 - 743
Target Start/End: Original strand, 24890097 - 24890248
Alignment:
| Q |
592 |
gtgtatgtgaacatatctggttcaattccccggtctttgatcttcttcaataacgcaattgccttgtcaacttgatggtttttaaacaatgcatccaata |
691 |
Q |
| |
|
||||||||| ||||||||||| ||| ||| ||||||| | || | ||||| ||||||||||||||||| ||||||||||| | || |||||||||| |
|
|
| T |
24890097 |
gtgtatgtgtacatatctggtcgaataccctggtctttcaaatttgttaataatgcaattgccttgtcaacatgatggtttttgcataaagcatccaata |
24890196 |
T |
|
| Q |
692 |
acgaggtgtaaatgattatgtcagcttgttgacctctatcatgcatctcatc |
743 |
Q |
| |
|
|| ||||| | | ||| | || | | ||||||||||||||||||||||| |
|
|
| T |
24890197 |
tagaactgtaagtaactatattaggtggctgacctctatcatgcatctcatc |
24890248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #28
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 640 - 743
Target Start/End: Complemental strand, 29073863 - 29073760
Alignment:
| Q |
640 |
aataacgcaattgccttgtcaacttgatggtttttaaacaatgcatccaataacgaggtgtaaatgattatgtcagcttgttgacctctatcatgcatct |
739 |
Q |
| |
|
||||| ||||||||||||||||| ||||||||||| | || |||||||||| || ||||| | ||||| |||| | || ||||||||||||||||| |
|
|
| T |
29073863 |
aataatgcaattgccttgtcaacctgatggtttttgcataaagcatccaatatagaactgtaagtaattatatcaggtggtacacctctatcatgcatct |
29073764 |
T |
|
| Q |
740 |
catc |
743 |
Q |
| |
|
|||| |
|
|
| T |
29073763 |
catc |
29073760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #29
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 640 - 743
Target Start/End: Complemental strand, 29078627 - 29078524
Alignment:
| Q |
640 |
aataacgcaattgccttgtcaacttgatggtttttaaacaatgcatccaataacgaggtgtaaatgattatgtcagcttgttgacctctatcatgcatct |
739 |
Q |
| |
|
||||| ||||||||||||||||| ||||||||||| | || |||||||||| || ||||| | ||||| |||| | || ||||||||||||||||| |
|
|
| T |
29078627 |
aataatgcaattgccttgtcaacctgatggtttttgcataaagcatccaatatagaactgtaagtaattatatcaggtggtacacctctatcatgcatct |
29078528 |
T |
|
| Q |
740 |
catc |
743 |
Q |
| |
|
|||| |
|
|
| T |
29078527 |
catc |
29078524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #30
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 640 - 743
Target Start/End: Complemental strand, 29106436 - 29106333
Alignment:
| Q |
640 |
aataacgcaattgccttgtcaacttgatggtttttaaacaatgcatccaataacgaggtgtaaatgattatgtcagcttgttgacctctatcatgcatct |
739 |
Q |
| |
|
||||| ||||||||||||||||| ||||||||||| | || |||||||||| || ||||| | ||||| |||| | || ||||||||||||||||| |
|
|
| T |
29106436 |
aataatgcaattgccttgtcaacctgatggtttttgcataaagcatccaatatagaactgtaagtaattatatcaggtggtacacctctatcatgcatct |
29106337 |
T |
|
| Q |
740 |
catc |
743 |
Q |
| |
|
|||| |
|
|
| T |
29106336 |
catc |
29106333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #31
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 373 - 467
Target Start/End: Complemental strand, 24942541 - 24942447
Alignment:
| Q |
373 |
ataagagtttcgtaagttacaacatcaggcgtgcaaccattgtcttccatttcagacagtacaaacaatgcttcgtcaaacaagccctctttaca |
467 |
Q |
| |
|
||||||| ||| |||||||| || ||| |||||||||||||||||||||| |||| || |||||||||| ||||||||||||| |||||| |
|
|
| T |
24942541 |
ataagagcttcaaaagttacatgattaggggtgcaaccattgtcttccatttttgacactaaggacaatgcttcatcaaacaagccctttttaca |
24942447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #32
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 647 - 743
Target Start/End: Original strand, 24271853 - 24271949
Alignment:
| Q |
647 |
caattgccttgtcaacttgatggtttttaaacaatgcatccaataacgaggtgtaaatgattatgtcagcttgttgacctctatcatgcatctcatc |
743 |
Q |
| |
|
|||||||||||||||| ||||||||||| | || ||||||||| || |||| ||||||| |||| |||||| |||| ||||||||||||||| |
|
|
| T |
24271853 |
caattgccttgtcaacctgatggtttttgcataaatcatccaatatagaactgtacgtgattatatcaggttgttgccctcgatcatgcatctcatc |
24271949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #33
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 641 - 743
Target Start/End: Original strand, 30999838 - 30999940
Alignment:
| Q |
641 |
ataacgcaattgccttgtcaacttgatggtttttaaacaatgcatccaataacgaggtgtaaatgattatgtcagcttgttgacctctatcatgcatctc |
740 |
Q |
| |
|
|||| |||||||||| |||||| |||||||||| | || |||||||||| || ||||||| | ||| | || | |||||||||||||||||||||| |
|
|
| T |
30999838 |
ataatgcaattgcctggtcaacacgatggtttttgcataaagcatccaatatagaactgtaaataactatattaggtggttgacctctatcatgcatctc |
30999937 |
T |
|
| Q |
741 |
atc |
743 |
Q |
| |
|
||| |
|
|
| T |
30999938 |
atc |
30999940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0110 (Bit Score: 155; Significance: 7e-82; HSPs: 1)
Name: scaffold0110
Description:
Target: scaffold0110; HSP #1
Raw Score: 155; E-Value: 7e-82
Query Start/End: Original strand, 244 - 756
Target Start/End: Original strand, 43370 - 43884
Alignment:
| Q |
244 |
aaattcagaataacagattgtaactagaaaacaactcac-tagttttactctt-acagtagacctctagaaagcatttcacggaggagtttcacggcctt |
341 |
Q |
| |
|
||||||| ||||||| ||||||| ||||||||| || || ||||||||||||| | ||||||||||||| || ||||||||| | |||||||| ||||| |
|
|
| T |
43370 |
aaattcataataacaaattgtaagtagaaaacatcttacctagttttactctttagagtagacctctagcaatcatttcacgaatcagtttcaccgcctt |
43469 |
T |
|
| Q |
342 |
atcattcatgtcgtttttgaacaaagcacagataagagtttcgtaagttacaacatcaggcgtgcaaccattgtcttccatttcagacagtacaaacaat |
441 |
Q |
| |
|
|||||| ||| ||||| |||||||||| |||| | |||| ||||||||| ||||||| |||||||| ||||||||||||| || |||| ||||| |
|
|
| T |
43470 |
atcatttctgttgttttcaaacaaagcacgaataataatttcataagttacaccatcaggagtgcaaccgttgtcttccatttttgagagtaaggacaat |
43569 |
T |
|
| Q |
442 |
gcttcgtcaaacaagccctctttacaaagcccattaatcatgacattatgcatgcaagcattaaaatgatagcccttaaccataagatcccgataaacct |
541 |
Q |
| |
|
||||| ||||| || || ||||||||||||||||||||||| ||| ||| || | ||||| ||||||||| ||| || |||| || ||||||||| |
|
|
| T |
43570 |
gcttcatcaaaaaacccttctttacaaagcccattaatcatcacagtatatatcctagcatctaaatgataggtgttattcagaagaacctgataaacct |
43669 |
T |
|
| Q |
542 |
cttgtgcatccttaagtcttccatttttgcatagtccatcaacaagcattgtgtatgtgaacatatctggttcaattccccggtctttgatcttcttcaa |
641 |
Q |
| |
|
||||||||||| ||||| ||||||||||||| |||||||||||||| || |||||||| | |||||| | | |||||| ||| ||||||||| | || |
|
|
| T |
43670 |
cttgtgcatccctaagttttccatttttgcacagtccatcaacaagtatagtgtatgtatagatatctagctgaattccttggttcttgatcttcgttaa |
43769 |
T |
|
| Q |
642 |
taacgcaattgccttgtcaacttgatggtttttaaacaatgcatccaataacgaggtgtaaatgattatgtcagcttgttgacctctatcatgcatctca |
741 |
Q |
| |
|
|| | |||||||||||||| ||||||||||| ||||| |||| ||||| || ||||| |||| |||| ||| ||||||||||||||||||||||| |
|
|
| T |
43770 |
caaagtgattgccttgtcaacctgatggtttttgcacaatccatctaataaagaactgtaagtgataatgttcgctggttgacctctatcatgcatctca |
43869 |
T |
|
| Q |
742 |
tctataagatcccaa |
756 |
Q |
| |
|
||||||| ||||||| |
|
|
| T |
43870 |
tctataaaatcccaa |
43884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 151; Significance: 2e-79; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 151; E-Value: 2e-79
Query Start/End: Original strand, 294 - 760
Target Start/End: Original strand, 44262146 - 44262612
Alignment:
| Q |
294 |
ttacagtagacctctagaaagcatttcacggaggagtttcacggccttatcattcatgtcgtttttgaacaaagcacagataagagtttcgtaagttaca |
393 |
Q |
| |
|
||||| || ||||||| || ||||||||| || |||||||| | |||||||||| || | |||| |||||||||| ||||||||||||||||||||| |
|
|
| T |
44262146 |
ttacaatatacctctaacaatcatttcacgaagaagtttcaccgtcttatcattcttgccattttcaaacaaagcacgaataagagtttcgtaagttaca |
44262245 |
T |
|
| Q |
394 |
acatcaggcgtgcaaccattgtcttccatttcagacagtacaaacaatgcttcgtcaaacaagccctctttacaaagcccattaatcatgacattatgca |
493 |
Q |
| |
|
||| ||| ||||||| ||||||||||||| |||| || ||||||| || ||||||||||||||||||||||||||||| | ||| ||| | | || |
|
|
| T |
44262246 |
gcattaggggtgcaactgttgtcttccatttttgacactaaggacaatgcgtcatcaaacaagccctctttacaaagcccattgaccatcacactgtaca |
44262345 |
T |
|
| Q |
494 |
tgcaagcattaaaatgatagcccttaaccataagatcccgataaacctcttgtgcatccttaagtcttccatttttgcatagtccatcaacaagcattgt |
593 |
Q |
| |
|
| | ||| |||||||||||||||| | ||||| | |||||||| ||||||||||||||||||||||||||||||||||||| |||||||| || || |
|
|
| T |
44262346 |
ttttaacatctaaatgatagcccttaataagaagattctgataaaccacttgtgcatccttaagtcttccatttttgcatagtccgtcaacaagtatagt |
44262445 |
T |
|
| Q |
594 |
gtatgtgaacatatctggttcaattccccggtctttgatcttcttcaataacgcaattgccttgtcaacttgatggtttttaaacaatgcatccaataac |
693 |
Q |
| |
|
||| || |||||| ||| | |||||| |||||||||||||| | ||||| | |||||||||||||| ||||||||||| |||| ||||||||||| |
|
|
| T |
44262446 |
gtaagtatacatatttggctgaattccttggtctttgatcttcgttaataatgtgattgccttgtcaacctgatggtttttgcacaaagcatccaataag |
44262545 |
T |
|
| Q |
694 |
gaggtgtaaatgattatgtcagcttgttgacctctatcatgcatctcatctataagatcccaaacat |
760 |
Q |
| |
|
|| ||||| |||| | ||||| |||| ||| ||| ||||||||||||||||||||||||||||| |
|
|
| T |
44262546 |
gaattgtaagtgataacatcagcaggttggcctatattatgcatctcatctataagatcccaaacat |
44262612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 127; Significance: 4e-65; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 127; E-Value: 4e-65
Query Start/End: Original strand, 386 - 759
Target Start/End: Complemental strand, 8651622 - 8651247
Alignment:
| Q |
386 |
aagttacaacatcaggcgtgcaaccattgtcttccatttcagacagtacaaacaatgcttcgtcaaacaagccctctttacaaagcccattaatcatgac |
485 |
Q |
| |
|
|||||||| ||||||| |||| || ||||||||||||| || |||| |||| ||||| | ||||||| |||||||||||||||| ||||||| | |
|
|
| T |
8651622 |
aagttacaccatcaggattgcacccgttgtcttccatttttgagagtaaggacaacgcttcatataacaagctctctttacaaagcccagtaatcatcat |
8651523 |
T |
|
| Q |
486 |
atta---tgcatgcaagcattaaaatgatagcccttaaccataagatcccgataaacctcttgtgcatccttaagtcttccatttttgcatagtccatca |
582 |
Q |
| |
|
| || | ||| | | | | |||| ||||||| |||| | |||||| | ||||||| ||||| | || | |||||||||||||||||||||||||||| |
|
|
| T |
8651522 |
agtactgtacatcctaacttcaaaacgatagcctttaatcgtaagattcggataaacttcttgcgtgtcttgaagtcttccatttttgcatagtccatca |
8651423 |
T |
|
| Q |
583 |
acaagcattgtgtatgtgaacatatctggttcaattccccggtctttgatcttcttcaataacgcaattgccttgtcaacttgatggtttttaaacaatg |
682 |
Q |
| |
|
||||| | ||||||| ||||||||| ||||||||||| |||||||||||||||||||||| ||||||||| ||| ||| | ||||||||| ||||||| |
|
|
| T |
8651422 |
acaagtagtgtgtatatgaacatatatggttcaattctatggtctttgatcttcttcaataatgcaattgccatgtaaaccttatggtttttgaacaatg |
8651323 |
T |
|
| Q |
683 |
catccaataacgaggtgtaaatgattatgtcagcttgttgacctctatcatgcatctcatctataagatcccaaaca |
759 |
Q |
| |
|
|||| ||||| || |||||| ||||||||||||||||||||| |||||||||||| ||||||||||||||| ||||| |
|
|
| T |
8651322 |
catcaaataaagaagtgtaagtgattatgtcagcttgttgacatctatcatgcat-tcatctataagatccaaaaca |
8651247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 441 - 674
Target Start/End: Complemental strand, 3643336 - 3643103
Alignment:
| Q |
441 |
tgcttcgtcaaacaagccctctttacaaagcccattaatcatgacattatgcatgcaagcattaaaatgatagcccttaaccataagatcccgataaacc |
540 |
Q |
| |
|
|||||| | ||||||||| ||||||||||| ||||| ||||| | ||||| | | |||||||| | | ||| ||||||| || ||||||| | |||| |
|
|
| T |
3643336 |
tgcttcattaaacaagccttctttacaaagtccattgatcataatattatacgtccaagcatttacactataacccttaatcaaaagatcctggaaaaca |
3643237 |
T |
|
| Q |
541 |
tcttgtgcatccttaagtcttccatttttgcatagtccatcaacaagcattgtgtatgtgaacatatctggttcaattccccggtctttgatcttcttca |
640 |
Q |
| |
|
|||||||||| |||||||| ||| ||| || |||||||||| ||| || |||||||| ||||| ||||| ||| ||| ||||||| || ||||| | |
|
|
| T |
3643236 |
tcttgtgcattcttaagtcgtcctcctttacagagtccatcaataagtatattgtatgtgtacatacttggttgaatgccctggtctttaattttcttaa |
3643137 |
T |
|
| Q |
641 |
ataacgcaattgccttgtcaacttgatggttttt |
674 |
Q |
| |
|
||| ||||| || ||||||| ||||||||||| |
|
|
| T |
3643136 |
ctaatgcaatagctttgtcaatatgatggttttt |
3643103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 116; Significance: 1e-58; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 244 - 692
Target Start/End: Complemental strand, 9783044 - 9782587
Alignment:
| Q |
244 |
aaattcagaataacagattgtaactagaaaacaactcac-tagttttactctt-acagtagacctctagaaagcatttcacggaggagtttcacggcctt |
341 |
Q |
| |
|
||||||| ||||||| | |||||| |||| || ||||| ||||||||||||| | | |||||||||| || |||||||| || |||||||| ||||| |
|
|
| T |
9783044 |
aaattcacaataacaaactgtaaccggaaagcatctcacctagttttactctttagaacagacctctagcaatcatttcacaaagaagtttcaccgcctt |
9782945 |
T |
|
| Q |
342 |
atcattcatgtcgtttttgaacaaagcacagataagagtttcgtaagttacaacatcaggcgtg-------caaccattgtcttccatttcagacagtac |
434 |
Q |
| |
|
|||||| |||| ||| |||||||||| ||| ||||||| |||||||| ||||||| ||| ||||| |||||||||||| || |||| |
|
|
| T |
9782944 |
atcattttggtcgctttcaaacaaagcacgaatacgagtttcataagttactgcatcaggagtgaggagtgcaaccgatgtcttccatttttgagagtaa |
9782845 |
T |
|
| Q |
435 |
aaacaatgcttcgtcaaacaagccctctttacaaagcccattaatcatgacattatgcatgcaagcattaaaatgatagcccttaaccataagatcccga |
534 |
Q |
| |
|
|||||||||| || || || ||||||||||| |||||||||||||| ||| ||| ||| | ||||| |||||||| || |||| | ||||||||||| |
|
|
| T |
9782844 |
ggacaatgcttcatcgaaaaaaccctctttacagagcccattaatcatcacagtatacatcctagcatctaaatgataacctttaatcgtaagatcccga |
9782745 |
T |
|
| Q |
535 |
taaacctcttgtgcatccttaagtcttccatttttgcatagtccatcaacaagcattgtgtatgtgaacatatctggttcaattccccggtctttgatct |
634 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||| |||||||||||||| || |||||||| |||||||||| | |||||| |||||| |||| |
|
|
| T |
9782744 |
taaaccctttgtgcatccttaagtcttccatttttgcacagtccatcaacaagtatagtgtatgtacacatatctggctgaattccttcgtctttcatct |
9782645 |
T |
|
| Q |
635 |
tcttcaataacgcaattgccttgtcaacttgatggtttttaaacaatgcatccaataa |
692 |
Q |
| |
|
| | || |||||||||||||||||||| |||||| |||| |||| ||||||||||| |
|
|
| T |
9782644 |
ttgttaacaacgcaattgccttgtcaacctgatggattttgcacaaagcatccaataa |
9782587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 109; Significance: 2e-54; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 380 - 760
Target Start/End: Complemental strand, 24227180 - 24226800
Alignment:
| Q |
380 |
tttcgtaagttacaacatcaggcgtgcaaccattgtcttccatttcagacagtacaaacaatgcttcgtcaaacaagccctctttacaaagcccattaat |
479 |
Q |
| |
|
|||| ||||||||| ||||||| ||||| ||||||||||||| || |||| |||||||||| || || || || |||||||||||||||||||| |
|
|
| T |
24227180 |
tttcataagttacaccatcaggagtgcacttgttgtcttccatttttgagagtaaggacaatgcttcatccaaaaacccttctttacaaagcccattaat |
24227081 |
T |
|
| Q |
480 |
catgacattatgcatgcaagcattaaaatgatagcccttaaccataagatcccgataaacctcttgtgcatccttaagtcttccatttttgcatagtcca |
579 |
Q |
| |
|
||| ||| ||| || | ||||| || |||||||| ||| || ||||||| |||||||||||||||||||| ||||||||||||||||||| |||||| |
|
|
| T |
24227080 |
catcacagtatatatcctagcatctaactgatagcctttattcagaagatcctgataaacctcttgtgcatccctaagtcttccatttttgcacagtcca |
24226981 |
T |
|
| Q |
580 |
tcaacaagcattgtgtatgtgaacatatctggttcaattccccggtctttgatcttcttcaataacgcaattgccttgtcaacttgatggtttttaaaca |
679 |
Q |
| |
|
|||||||| || |||||||| | |||| ||| |||||| | | ||||||||| | || || | |||||||||||||| ||||||||||| ||| |
|
|
| T |
24226980 |
tcaacaagtatagtgtatgtatagatatttggccgaattccttgattcttgatcttcgttaacaatgtgattgccttgtcaacctgatggtttttgcaca |
24226881 |
T |
|
| Q |
680 |
atgcatccaataacgaggtgtaaatgattatgtcagcttgttgacctctatcatgcatctcatctataagatcccaaacat |
760 |
Q |
| |
|
|| |||| ||||| || ||||| ||||||||| |||| ||||||||||||||||||||||| |||| | ||||||||||| |
|
|
| T |
24226880 |
atccatctaataaagaattgtaagtgattatgttagctggttgacctctatcatgcatctcacctatgaaatcccaaacat |
24226800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 441 - 674
Target Start/End: Complemental strand, 16351349 - 16351116
Alignment:
| Q |
441 |
tgcttcgtcaaacaagccctctttacaaagcccattaatcatgacattatgcatgcaagcattaaaatgatagcccttaaccataagatcccgataaacc |
540 |
Q |
| |
|
|||||| ||||||||||| ||||||||||| ||||| ||||| | ||||| | | |||||||| | | ||| ||||||| || ||||||| || |||| |
|
|
| T |
16351349 |
tgcttcatcaaacaagccttctttacaaagtccattgatcataatattatacgtccaagcatttacgttataacccttaatcaaaagatcctgaaaaaca |
16351250 |
T |
|
| Q |
541 |
tcttgtgcatccttaagtcttccatttttgcatagtccatcaacaagcattgtgtatgtgaacatatctggttcaattccccggtctttgatcttcttca |
640 |
Q |
| |
|
|||||||||| ||| ||| ||| ||||||||||||||||| ||| || |||||||| |||||| ||||| ||| || | ||||| || ||||| | |
|
|
| T |
16351249 |
tcttgtgcattcttgagttgtcctcctttgcatagtccatcaataagtatattgtatgtgcacatatttggttgaatgccatgttctttaattttcttaa |
16351150 |
T |
|
| Q |
641 |
ataacgcaattgccttgtcaacttgatggttttt |
674 |
Q |
| |
|
||| ||||| ||||||||||| || |||||||| |
|
|
| T |
16351149 |
ctaatgcaatagccttgtcaacatgttggttttt |
16351116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 441 - 756
Target Start/End: Complemental strand, 11991611 - 11991296
Alignment:
| Q |
441 |
tgcttcgtcaaacaagccctctttacaaagcccattaatcatgacattatgcatgcaagcattaaaatgatagcccttaaccataagatcccgataaacc |
540 |
Q |
| |
|
|||||| ||||||||||||||||||||||| ||||| | ||| | ||||| | | |||||||| | | ||| |||||| || ||||||| | |||| |
|
|
| T |
11991611 |
tgcttcatcaaacaagccctctttacaaagtccattgaccataatattatacgtccaagcatttacactataacccttactcaaaagatcctggaaaaca |
11991512 |
T |
|
| Q |
541 |
tcttgtgcatccttaagtcttccatttttgcatagtccatcaacaagcattgtgtatgtgaacatatctggttcaattccccggtctttgatcttcttca |
640 |
Q |
| |
|
|||||||||| |||||||| ||| |||||||| ||||| || ||| || || | ||| |||||||||||| ||| || | ||||| || ||||| | |
|
|
| T |
11991511 |
tcttgtgcattcttaagtcgtcctactttgcataatccataaataagtatattgaacgtgtacatatctggttgaatgccttgatctttaattttcttaa |
11991412 |
T |
|
| Q |
641 |
ataacgcaattgccttgtcaacttgatggtttttaaacaatgcatccaataacgaggtgtaaatgattatgtcagcttgttgacctctatcatgcatctc |
740 |
Q |
| |
|
||| ||||| |||| |||||| |||||||||||| | || ||||| | ||| || ||||| ||| ||| | ||| ||||||| |||||||||| || |
|
|
| T |
11991411 |
ctaatgcaatagcctggtcaacatgatggtttttacataaagcatctattaaacagttgtaagtgaatatattggctggttgaccattatcatgcatttc |
11991312 |
T |
|
| Q |
741 |
atctataagatcccaa |
756 |
Q |
| |
|
||| | ||| |||||| |
|
|
| T |
11991311 |
atcaacaagctcccaa |
11991296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 647 - 740
Target Start/End: Original strand, 24219141 - 24219234
Alignment:
| Q |
647 |
caattgccttgtcaacttgatggtttttaaacaatgcatccaataacgaggtgtaaatgattatgtcagcttgttgacctctatcatgcatctc |
740 |
Q |
| |
|
|||||||||||||||| ||||||||||| | || ||||||||||| || ||||| | ||||| | || | |||||||||||||||||||||| |
|
|
| T |
24219141 |
caattgccttgtcaacatgatggtttttgcataaagcatccaataaagaattgtaagtaattatattaggtggttgacctctatcatgcatctc |
24219234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 546 - 583
Target Start/End: Complemental strand, 33998134 - 33998097
Alignment:
| Q |
546 |
tgcatccttaagtcttccatttttgcatagtccatcaa |
583 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||||||||| |
|
|
| T |
33998134 |
tgcatcctcaagtcttccatctttgcatagtccatcaa |
33998097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0572 (Bit Score: 66; Significance: 9e-29; HSPs: 1)
Name: scaffold0572
Description:
Target: scaffold0572; HSP #1
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 511 - 756
Target Start/End: Complemental strand, 3462 - 3217
Alignment:
| Q |
511 |
tagcccttaaccataagatcccgataaacctcttgtgcatccttaagtcttccatttttgcatagtccatcaacaagcattgtgtatgtgaacatatctg |
610 |
Q |
| |
|
||||| |||| || ||||||| || ||| | |||||||||||||||| ||||| | ||||||||||||||| | ||| || |||||||| |||||||| |
|
|
| T |
3462 |
tagcctttaatcaaaagatcctgaaaaatcacttgtgcatccttaagccttccttgtttgcatagtccatcgataagtatattgtatgtgtacatatcta |
3363 |
T |
|
| Q |
611 |
gttcaattccccggtctttgatcttcttcaataacgcaattgccttgtcaacttgatggtttttaaacaatgcatccaataacgaggtgtaaatgattat |
710 |
Q |
| |
|
||| ||| || ||||||| || ||||| | ||| ||||| ||||||||||| ||||||||||| | || ||||| | ||| || ||||| ||||||| |
|
|
| T |
3362 |
gttgaatgccttggtctttaattttcttgactaatgcaatagccttgtcaacatgatggtttttgcataaagcatctattaatgaattgtaagtgattat |
3263 |
T |
|
| Q |
711 |
gtcagcttgttgacctctatcatgcatctcatctataagatcccaa |
756 |
Q |
| |
|
|||||| ||||||| |||||| |||||||||| | ||| |||||| |
|
|
| T |
3262 |
atcagctggttgaccactatcacgcatctcatcaacaagctcccaa |
3217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold2177 (Bit Score: 61; Significance: 9e-26; HSPs: 1)
Name: scaffold2177
Description:
Target: scaffold2177; HSP #1
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 241 - 512
Target Start/End: Complemental strand, 404 - 133
Alignment:
| Q |
241 |
ttcaaattcagaataacagattgtaactagaaaacaactcac-tagttttactcttacagtagacctctagaaagcatttcacggaggagtttcacggcc |
339 |
Q |
| |
|
|||||||||| ||||| | ||||||| ||| ||| |||| || || ||||||||||| |||||||||||| || ||||||| | || | ||| | ||| |
|
|
| T |
404 |
ttcaaattcaaaataaaaaattgtaattaggaaataactaacctacttttactcttaaagtagacctctatcaatcatttcatgaagaatcttctctgcc |
305 |
T |
|
| Q |
340 |
ttatcattcatgtcgtttttgaacaaagcacagataagagtttcgtaagttacaacatcaggcgtgcaaccattgtcttccatttcagacagtacaaaca |
439 |
Q |
| |
|
||||||||| || ||||||||||||||||| |||| |||||| ||||||||||||||| | || ||||||| |||||||||| ||| || ||| |
|
|
| T |
304 |
ttatcattcttgcggtttttgaacaaagcacgaataatagtttcataagttacaacatcatgagtcaaaccattttcttccatttgcaaca-taagtaca |
206 |
T |
|
| Q |
440 |
atgcttcgtcaaacaagccctctttacaaagcccattaatcatgacattatgcatgcaagcattaaaatgata |
512 |
Q |
| |
|
||||||| |||||||| |||||| ||||||||||| | |||| ||||||| ||||| |||| |||||||| |
|
|
| T |
205 |
atgcttcatcaaacaaaccctctctacaaagcccaatgatcagaacattatatgtgcaaacatttaaatgata |
133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0014 (Bit Score: 53; Significance: 5e-21; HSPs: 2)
Name: scaffold0014
Description:
Target: scaffold0014; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 291 - 739
Target Start/End: Original strand, 121030 - 121478
Alignment:
| Q |
291 |
ctcttacagtagacctctagaaagcatttcacggaggagtttcacggccttatcattcatgtcgtttttgaacaaagcacagataagagtttcgtaagtt |
390 |
Q |
| |
|
|||||||| |||||||||| || ||||||||| || |||||| | |||||||||||| || ||||| || | ||| | |||| |||||| |||||| |
|
|
| T |
121030 |
ctcttacaacagacctctagtaatcatttcacgtagaagtttctctgccttatcattctcatcatttttaaaaagagcgtaaataatagtttcataagtt |
121129 |
T |
|
| Q |
391 |
acaacatcaggcgtgcaaccattgtcttccatttcagacagtacaaacaatgcttcgtcaaacaagccctctttacaaagcccattaatcatgacattat |
490 |
Q |
| |
|
||||||||||| |||||||||||||||||||||| ||||| || ||||| ||||||| ||||| |||||| ||||||||||| ||||| |
|
|
| T |
121130 |
acaacatcaggagtgcaaccattgtcttccattttttccagtagggtcatagcttcatcaaacagtccctccaaacaaagaccattaatcatagtattat |
121229 |
T |
|
| Q |
491 |
gcatgcaagcattaaaatgatagcccttaaccataagatcccgataaacctcttgtgcatccttaagtcttccatttttgcatagtccatcaacaagcat |
590 |
Q |
| |
|
| ||| | || | | |||||| |||| || ||||||| || ||| | ||||||||| || ||||||||| | ||||||||||||||| | ||| || |
|
|
| T |
121230 |
atgtccaaacttttaccttatagcctttaatcaaaagatcctgaaaaatcacttgtgcattctcaagtcttccttctttgcatagtccatcgataagtat |
121329 |
T |
|
| Q |
591 |
tgtgtatgtgaacatatctggttcaattccccggtctttgatcttcttcaataacgcaattgccttgtcaacttgatggtttttaaacaatgcatccaat |
690 |
Q |
| |
|
|||||||| |||| |||| ||| ||| | ||||| || ||||| | || ||||||||||||||||||||||| ||||| | || |||| |||| |
|
|
| T |
121330 |
attgtatgtgttaatattgggttgaatgccctgatctttaattttcttgaccaatgcaattgccttgtcaacttgatgatttttgcataaagcatgcaat |
121429 |
T |
|
| Q |
691 |
aacgaggtgtaaatgattatgtcagcttgttgacctctatcatgcatct |
739 |
Q |
| |
|
|| || |||| |||| || | || ||||||||||||||||||||| |
|
|
| T |
121430 |
aaggaattgtatgtgataatattggcaggttgacctctatcatgcatct |
121478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0014; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 541 - 626
Target Start/End: Complemental strand, 140464 - 140379
Alignment:
| Q |
541 |
tcttgtgcatccttaagtcttccatttttgcatagtccatcaacaagcattgtgtatgtgaacatatctggttcaattccccggtc |
626 |
Q |
| |
|
|||||||||| |||||||| ||| ||||||||||||||||| ||| || ||||||| |||||||||||| ||| ||| |||| |
|
|
| T |
140464 |
tcttgtgcattcttaagtcgtcctcctttgcatagtccatcaataagtatattgtatgtatacatatctggttgaatgccctggtc |
140379 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0429 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: scaffold0429
Description:
Target: scaffold0429; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 511 - 743
Target Start/End: Complemental strand, 6425 - 6193
Alignment:
| Q |
511 |
tagcccttaaccataagatcccgataaacctcttgtgcatccttaagtcttccatttttgcatagtccatcaacaagcattgtgtatgtgaacatatctg |
610 |
Q |
| |
|
||||| |||| || ||||||| || ||| | |||||||||||||||| ||||| | ||||||||||||||| | ||| || |||||||| |||||| | |
|
|
| T |
6425 |
tagcctttaatcaaaagatcctgaaaaatcacttgtgcatccttaagccttccttgtttgcatagtccatcgataagtatattgtatgtgtacatattta |
6326 |
T |
|
| Q |
611 |
gttcaattccccggtctttgatcttcttcaataacgcaattgccttgtcaacttgatggtttttaaacaatgcatccaataacgaggtgtaaatgattat |
710 |
Q |
| |
|
||| ||| || ||||||| || ||||| | ||| |||| ||||||||||| ||||||||||| | |||||||| | ||| || ||||| || ||| |
|
|
| T |
6325 |
gttgaatgccttggtctttaattttcttgactaatacaatagccttgtcaacatgatggtttttgcataatgcatctattaaagaattgtaagtgcatat |
6226 |
T |
|
| Q |
711 |
gtcagcttgttgacctctatcatgcatctcatc |
743 |
Q |
| |
|
||||| | ||||||| ||||| |||||||||| |
|
|
| T |
6225 |
gtcaggtggttgaccattatcacgcatctcatc |
6193 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0573 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: scaffold0573
Description:
Target: scaffold0573; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 543 - 743
Target Start/End: Complemental strand, 4334 - 4134
Alignment:
| Q |
543 |
ttgtgcatccttaagtcttccatttttgcatagtccatcaacaagcattgtgtatgtgaacatatctggttcaattccccggtctttgatcttcttcaat |
642 |
Q |
| |
|
||||||||||| |||||||| ||| || ||||||| || ||| || ||||||||| |||||| ||||| || ||| ||||||| | || | ||| |
|
|
| T |
4334 |
ttgtgcatcctccggtcttccacctttacacagtccattaataagaatagtgtatgtgtacatatttggttgaagaccctggtctttcaattttgttaat |
4235 |
T |
|
| Q |
643 |
aacgcaattgccttgtcaacttgatggtttttaaacaatgcatccaataacgaggtgtaaatgattatgtcagcttgttgacctctatcatgcatctcat |
742 |
Q |
| |
|
|| ||||||||||||||| || |||||||||| | || |||||||||| || ||||| | ||||| |||| | |||||||||||||||||||||||| |
|
|
| T |
4234 |
aatgcaattgccttgtcacctggatggtttttgcataaagcatccaatagagaactgtaagtaattatatcaggtggttgacctctatcatgcatctcat |
4135 |
T |
|
| Q |
743 |
c |
743 |
Q |
| |
|
| |
|
|
| T |
4134 |
c |
4134 |
T |
|
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Target: scaffold0019 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 567 - 674
Target Start/End: Original strand, 125949 - 126056
Alignment:
| Q |
567 |
tttgcatagtccatcaacaagcattgtgtatgtgaacatatctggttcaattccccggtctttgatcttcttcaataacgcaattgccttgtcaacttga |
666 |
Q |
| |
|
||||||||||||||||| ||| || |||||||| |||||||||||| ||| || | |||||||| ||||| | ||| ||||| |||||||||| ||| |
|
|
| T |
125949 |
tttgcatagtccatcaataagtatattgtatgtgcacatatctggttgaatgccttgatctttgattttcttaactaatgcaatagccttgtcaatctga |
126048 |
T |
|
| Q |
667 |
tggttttt |
674 |
Q |
| |
|
|||||||| |
|
|
| T |
126049 |
tggttttt |
126056 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0177 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0177
Description:
Target: scaffold0177; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 373 - 739
Target Start/End: Complemental strand, 27720 - 27354
Alignment:
| Q |
373 |
ataagagtttcgtaagttacaacatcaggcgtgcaaccattgtcttccatttcagacagtacaaacaatgcttcgtcaaacaagccctctttacaaagcc |
472 |
Q |
| |
|
|||| |||||| ||||||||||||||||| ||||||||||| |||||||||| ||||| || ||||| |||||||| ||||| |||||| | |
|
|
| T |
27720 |
ataatagtttcataagttacaacatcaggagtgcaaccattatcttccattttttccagtagggtcatagcttcatcaaacaatccctccaaacaaagac |
27621 |
T |
|
| Q |
473 |
cattaatcatgacattatgcatgcaagcattaaaatgatagcccttaaccataagatcccgataaacctcttgtgcatccttaagtcttccatttttgca |
572 |
Q |
| |
|
|||||||||| | ||||| | || | | | | |||||| |||| || ||||||| || ||| | ||||||||| || || |||||| | |||||| |
|
|
| T |
27620 |
cattaatcataatattatatgtccagactgttaccttatagcctttaatcaaaagatcctgaaaaatcacttgtgcattctcaaatcttccttctttgca |
27521 |
T |
|
| Q |
573 |
tagtccatcaacaagcattgtgtatgtgaacatatctggttcaattccccggtctttgatcttcttcaataacgcaattgccttgtcaacttgatggttt |
672 |
Q |
| |
|
||||||||| | ||| || |||| ||| |||| ||||| ||| || ||||||| || ||||| | || |||| ||||||||||||||| |||||| |
|
|
| T |
27520 |
tagtccatcgataagtatattgtacgtgttaatatttggttgaatgccttggtctttaattttcttgaccaatgcaactgccttgtcaacttggtggttt |
27421 |
T |
|
| Q |
673 |
ttaaacaatgcatccaataacgaggtgtaaatgattatgtcagcttgttgacctctatcatgcatct |
739 |
Q |
| |
|
||| | || |||| ||| || |||||||| |||||| || || ||||||||||| ||||||||| |
|
|
| T |
27420 |
ttacataaagcatgcaagaaggaggtgtatgtgattacatcggcaggttgacctctagcatgcatct |
27354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0308 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0308
Description:
Target: scaffold0308; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 542 - 675
Target Start/End: Complemental strand, 9193 - 9060
Alignment:
| Q |
542 |
cttgtgcatccttaagtcttccatttttgcatagtccatcaacaagcattgtgtatgtgaacatatctggttcaattccccggtctttgatcttcttcaa |
641 |
Q |
| |
|
||||||| |||||||||||||| | ||||||||||||||| | ||| || |||||||| |||||| ||||| ||| | |||||||| | ||||| | |
|
|
| T |
9193 |
cttgtgcgtccttaagtcttccttgtttgcatagtccatcgataagtatattgtatgtgtacatatttggttgaatgtctcggtctttaagtttcttgac |
9094 |
T |
|
| Q |
642 |
taacgcaattgccttgtcaacttgatggttttta |
675 |
Q |
| |
|
|| |||||||||||||||| ||| |||||||| |
|
|
| T |
9093 |
caattcaattgccttgtcaacatgacggttttta |
9060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000005; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 438 - 743
Target Start/End: Complemental strand, 17251615 - 17251310
Alignment:
| Q |
438 |
caatgcttcgtcaaacaagccctctttacaaagcccattaatcatgacattatgcatgcaagcattaaaatgatagcccttaaccataagatcccgataa |
537 |
Q |
| |
|
||||||||| |||||||||| |||||||||||||||||| ||||| | | ||| | | ||| | || || ||| || | || ||||||| || || |
|
|
| T |
17251615 |
caatgcttcatcaaacaagctctctttacaaagcccattgatcataatactatatgttacaacatctacattatggcctttcatcaaaagatcctgaaaa |
17251516 |
T |
|
| Q |
538 |
acctcttgtgcatccttaagtcttccatttttgcatagtccatcaacaagcattgtgtatgtgaacatatctggttcaattccccggtctttgatcttct |
637 |
Q |
| |
|
|||| || ||||| ||||||| |||| |||||| |||||||||||||| || ||||||| |||||| || | ||| || | ||||| || |||| |
|
|
| T |
17251515 |
accttctgagcatctgtaagtctaccatctttgcaaagtccatcaacaagtatattgtatgtatacatatttgcctgaataccttgatctttaattttct |
17251416 |
T |
|
| Q |
638 |
tcaataacgcaattgccttgtcaacttgatggtttttaaacaatgcatccaataacgaggtgtaaatgattatgtcagcttgttgacctctatcatgcat |
737 |
Q |
| |
|
| | ||| ||||||||||| |||||||||||| |||| |||| ||||| | || || |||||| | |||| | || | ||||||||||||||||||| |
|
|
| T |
17251415 |
ttagtaatgcaattgccttatcaacttgatggcttttgcacaaagcatctatcaaagaagtgtaagttattacattaggtggttgacctctatcatgcat |
17251316 |
T |
|
| Q |
738 |
ctcatc |
743 |
Q |
| |
|
|||||| |
|
|
| T |
17251315 |
ctcatc |
17251310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 441 - 661
Target Start/End: Complemental strand, 41316559 - 41316339
Alignment:
| Q |
441 |
tgcttcgtcaaacaagccctctttacaaagcccattaatcatgacattatgcatgcaagcattaaaatgatagcccttaaccataagatcccgataaacc |
540 |
Q |
| |
|
|||||| ||||||||||| ||||||||||| ||||| ||||||| ||||| | | ||| | | ||| ||||||| || ||||||| || |||| |
|
|
| T |
41316559 |
tgcttcatcaaacaagccttctttacaaagtccattgatcatgatattatacgtttggatatttagactataacccttaatcaaaagatcctgaaaaaca |
41316460 |
T |
|
| Q |
541 |
tcttgtgcatccttaagtcttccatttttgcatagtccatcaacaagcattgtgtatgtgaacatatctggttcaattccccggtctttgatcttcttca |
640 |
Q |
| |
|
|||||||||| |||||||||||| |||||||| ||||||| ||| || || ||||| ||||||| | || ||| || ||||||| || ||||||| |
|
|
| T |
41316459 |
tcttgtgcattcttaagtcttcctcatttgcataacccatcaataagtatattggatgtgtacatatccgattgaatgccttggtctttaattttcttca |
41316360 |
T |
|
| Q |
641 |
ataacgcaattgccttgtcaa |
661 |
Q |
| |
|
||| ||||| |||||||||| |
|
|
| T |
41316359 |
ctaatgcaatagccttgtcaa |
41316339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 525 - 610
Target Start/End: Complemental strand, 19490465 - 19490380
Alignment:
| Q |
525 |
aagatcccgataaacctcttgtgcatccttaagtcttccatttttgcatagtccatcaacaagcattgtgtatgtgaacatatctg |
610 |
Q |
| |
|
|||||||||| | | || ||| ||||| | ||||||||||| |||||| |||||||||| ||| || |||||||||| ||||||| |
|
|
| T |
19490465 |
aagatcccgaaatatcttttgcgcatcatcaagtcttccatctttgcaaagtccatcaataagtatattgtatgtgaagatatctg |
19490380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0051 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0051
Description:
Target: scaffold0051; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 511 - 605
Target Start/End: Original strand, 43088 - 43182
Alignment:
| Q |
511 |
tagcccttaaccataagatcccgataaacctcttgtgcatccttaagtcttccatttttgcatagtccatcaacaagcattgtgtatgtgaacat |
605 |
Q |
| |
|
||||| |||| || ||||||| || ||| | |||||||||||||||| ||||| | |||||||||||||||| ||| || |||||||| |||| |
|
|
| T |
43088 |
tagcctttaatcaaaagatcctgaaaaatcacttgtgcatccttaagccttccttgcttgcatagtccatcaataagtatattgtatgtgtacat |
43182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0654 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0654
Description:
Target: scaffold0654; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 646 - 675
Target Start/End: Original strand, 1125 - 1154
Alignment:
| Q |
646 |
gcaattgccttgtcaacttgatggttttta |
675 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
1125 |
gcaattgccttgtcaacttgatggttttta |
1154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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