View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16611_low_25 (Length: 261)
Name: NF16611_low_25
Description: NF16611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16611_low_25 |
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Alignment Details
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 49433577 - 49433340
Alignment:
| Q |
1 |
aaataattgtgttcaattttgaaatggtaatttctcggatgatcagtcaagcaattaattgaatatattttgggataaactgtgtcaagagctctgcata |
100 |
Q |
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| T |
49433577 |
aaataattgtgttcaattttgaaatggtaatttctcggatgatcagtcaagcaattgattgaatatattttgggataaactgtgtcaagagctctgcata |
49433478 |
T |
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| Q |
101 |
tactattcatgaatgtcctgccttgccattccttgacagtcatactaatgtttctttcatcttgactgattatatttttcatcttattgnnnnnnnnnna |
200 |
Q |
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| T |
49433477 |
tactattcatgaatgtcttgccttgccattccttgacagtcatactaatgtttctttcatcttgactgattatatttttcatcttattgtttttttttta |
49433378 |
T |
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| Q |
201 |
tttgactcatattcaaaatgctctgccatgccttgaca |
238 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
49433377 |
tttgactcatattcaaaatgctctgccatgccttgaca |
49433340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 22377838 - 22377601
Alignment:
| Q |
1 |
aaataattgtgttcaattttgaaatggtaatttctcggatgatcagtcaagcaattaattgaatatattttgggataaactgtgtcaagagctctgcata |
100 |
Q |
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|||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22377838 |
aaataactgtgttcaattttgaaatggtaatttcttggatgatcagtcaagcaattaattgaatatattttgggataaactgtgtcaagagctctgcata |
22377739 |
T |
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| Q |
101 |
tactattcatgaatgtcctgccttgccattccttgacagtcatactaatgtttctttcatcttgactgattatatttttcatcttattgnnnnnnnnnna |
200 |
Q |
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||||||||||||||||||| ||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
22377738 |
tactattcatgaatgtcctaccttgccatgccttcacagtcatactaatgtttctttcatcttgactgattatatttttcatcttattgtttttttttta |
22377639 |
T |
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| Q |
201 |
tttgactcatattcaaaatgctctgccatgccttgaca |
238 |
Q |
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||||| |||||||||||||||||||||||||||||||| |
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| T |
22377638 |
tttgattcatattcaaaatgctctgccatgccttgaca |
22377601 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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