View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16611_low_27 (Length: 239)

Name: NF16611_low_27
Description: NF16611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16611_low_27
NF16611_low_27
[»] chr4 (3 HSPs)
chr4 (1-229)||(23053869-23054095)
chr4 (22-216)||(47518106-47518297)
chr4 (31-216)||(53202542-53202725)
[»] chr5 (7 HSPs)
chr5 (37-229)||(7766674-7766866)
chr5 (35-216)||(18697202-18697381)
chr5 (27-216)||(41355205-41355392)
chr5 (57-224)||(7272037-7272204)
chr5 (52-215)||(6030074-6030237)
chr5 (52-164)||(26657032-26657147)
chr5 (52-164)||(26928620-26928735)
[»] chr1 (3 HSPs)
chr1 (35-216)||(34118250-34118427)
chr1 (35-224)||(615968-616157)
chr1 (22-177)||(39708529-39708687)
[»] chr8 (1 HSPs)
chr8 (36-229)||(10409086-10409278)
[»] chr6 (2 HSPs)
chr6 (22-216)||(21881742-21881936)
chr6 (35-216)||(20740863-20741042)
[»] chr2 (8 HSPs)
chr2 (53-215)||(4869861-4870022)
chr2 (22-216)||(1551244-1551435)
chr2 (22-207)||(17375555-17375741)
chr2 (22-216)||(17281600-17281791)
chr2 (31-216)||(4140672-4140855)
chr2 (39-216)||(34660468-34660645)
chr2 (154-216)||(1895686-1895746)
chr2 (35-76)||(1895770-1895811)
[»] chr3 (1 HSPs)
chr3 (35-224)||(18269516-18269705)
[»] chr7 (1 HSPs)
chr7 (22-229)||(3302836-3303046)


Alignment Details
Target: chr4 (Bit Score: 161; Significance: 5e-86; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 23053869 - 23054095
Alignment:
Q  1 gcgttaacaatctcacatttaactcatttctttctaaacctaggaccgtcgtactcctttcttcctcacacaaattctaaatccaccgctgccatcatgt 100  Q
    ||||||||||||||| |||||| || |||||||||||||||||||||| ||||||| |||| ||||||||||||||||||||||||||| ||||||||||    
T  23053869 gcgttaacaatctcatatttaattcctttctttctaaacctaggaccgccgtactcttttcatcctcacacaaattctaaatccaccgccgccatcatgt 23053968  T
Q  101 agatcaactagatggtggtgcgaagagggtctttgtcctctgcaccaccgtatctttccgacgtgcagtttctctctctgtcgtcgtaaatgttggtttg 200  Q
    ||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| ||||||||||||    
T  23053969 agatcaactggatggtggtgcggagagggtctttgtcctctgcaccaccgtatctttccgacgtgc-ggttctctctctgtcgtcgt-aatgttggtttg 23054066  T
Q  201 tgtttttggtgtttttattgtttcctttg 229  Q
    |||||||||| ||||| ||||||| ||||    
T  23054067 tgtttttggttttttttttgtttcgtttg 23054095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 22 - 216
Target Start/End: Original strand, 47518106 - 47518297
Alignment:
Q  22 actcatttctttctaaacctaggaccgtcgtactcctttcttcctcacacaaattctaaatccaccgctgccatcatgtagatcaactagatggtggtgc 121  Q
    |||| ||||||||||||| ||| |||| ||||| |||||||| ||||||||||||| |||||  |||| | ||||||||||||||| | |||||||||||    
T  47518106 actcctttctttctaaac-tagaaccgccgtacccctttctttctcacacaaattccaaatctgccgccgtcatcatgtagatcaaatggatggtggtgc 47518204  T
Q  122 gaagagggtctttgtcctctgcaccaccgtatctttccgacgtgcagtttctctctctgtcgtcgtaaatgttggtttgtgtttttggtgttttt 216  Q
    ||||||||||||||||||| |||||||  || ||||||||||||| |||  ||||| |||||||||||| |||||||||||||||||||||||||    
T  47518205 gaagagggtctttgtcctccgcaccacaatacctttccgacgtgcggtt--tctctttgtcgtcgtaaaggttggtttgtgtttttggtgttttt 47518297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 31 - 216
Target Start/End: Complemental strand, 53202725 - 53202542
Alignment:
Q  31 tttctaaacctaggaccgtcgtactcctttcttcctcacacaaattctaaatccaccgctgccatcatgtagatcaactagatggtggtgcgaagagggt 130  Q
    ||||||||| ||  |||| ||||||||||||||||||||||||||| ||||||| || | | ||||||||||||||| | ||||||||||||| ||||||    
T  53202725 tttctaaacgtaaaaccgccgtactcctttcttcctcacacaaattttaaatccgcccccgtcatcatgtagatcaaatggatggtggtgcgacgagggt 53202626  T
Q  131 ctttgtcctctgcaccaccgtatctttccgacgtgcagtttctctctctgtcgtcgtaaatgttggtttgtgtttttggtgttttt 216  Q
    |  ||||||| ||||||||||| ||||||||||||| |||   |||||| |||||||||| |||||||||| |||||| |||||||    
T  53202625 cactgtcctccgcaccaccgtacctttccgacgtgcggtt--gctctctatcgtcgtaaaggttggtttgtatttttgatgttttt 53202542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 121; Significance: 4e-62; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 37 - 229
Target Start/End: Original strand, 7766674 - 7766866
Alignment:
Q  37 aacctaggaccgtcgtactcctttcttcctcacacaaattctaaatccaccgctgccatcatgtagatcaactagatggtggtgcgaagagggtctttgt 136  Q
    |||||||||||| |||||||||||||||||||||||||||| |||||| |||| ||||||||||||||| | | ||||||||||||| ||||||||||||    
T  7766674 aacctaggaccgccgtactcctttcttcctcacacaaattccaaatccgccgccgccatcatgtagatctaatggatggtggtgcgacgagggtctttgt 7766773  T
Q  137 cctctgcaccaccgtatctttccgacgtgcagtttctctctctgtcgtcgtaaatgttggtttgtgtttttggtgtttttattgtttcctttg 229  Q
    |||| ||||||||||| |||||||||||   ||| ||| ||||||||||||||| ||||||||||||||||||||||||| ||||||| ||||    
T  7766774 cctccgcaccaccgtacctttccgacgtatggttgctcgctctgtcgtcgtaaaggttggtttgtgtttttggtgttttttttgtttcgtttg 7766866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 35 - 216
Target Start/End: Complemental strand, 18697381 - 18697202
Alignment:
Q  35 taaacctaggaccgtcgtactcctttcttcctcacacaaattctaaatccaccgctgccatcatgtagatcaactagatggtggtgcgaagagggtcttt 134  Q
    ||||||||||||||||||||||||||||||||||||||||||  |||||| |||| ||||||| ||||||||| | ||||||||||||| |||||||| |    
T  18697381 taaacctaggaccgtcgtactcctttcttcctcacacaaatttcaaatccgccgccgccatcacgtagatcaaatggatggtggtgcgacgagggtctct 18697282  T
Q  135 gtcctctgcaccaccgtatctttccgacgtgcagtttctctctctgtcgtcgtaaatgttggtttgtgtttttggtgttttt 216  Q
    |||||| |||||||||||  |||||||||||| |||   |||| |||||||||||| |||| ||| ||||||||||||||||    
T  18697281 gtcctccgcaccaccgtacatttccgacgtgcggtt--gctctttgtcgtcgtaaaggttgatttatgtttttggtgttttt 18697202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 27 - 216
Target Start/End: Original strand, 41355205 - 41355392
Alignment:
Q  27 tttctttctaaacctaggaccgtcgtactcctttcttcctcacacaaattctaaatccaccgctgccatcatgtagatcaactagatggtggtgcgaaga 126  Q
    ||||||||||||||||| ||||  ||||||||||||||||||||||||||||||||    ||  | ||||||||||||||| | ||||||||||||| ||    
T  41355205 tttctttctaaacctagaaccgcggtactcctttcttcctcacacaaattctaaatttgtcgtcgtcatcatgtagatcaaatggatggtggtgcgacga 41355304  T
Q  127 gggtctttgtcctctgcaccaccgtatctttccgacgtgcagtttctctctctgtcgtcgtaaatgttggtttgtgtttttggtgttttt 216  Q
    |||||||||||||| |||||| |||| |||||||||| |  |||   |||||| ||||||||||||||||||||||||||||||||||||    
T  41355305 gggtctttgtcctccgcaccatcgtacctttccgacgcgtggtt--gctctctttcgtcgtaaatgttggtttgtgtttttggtgttttt 41355392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 57 - 224
Target Start/End: Complemental strand, 7272204 - 7272037
Alignment:
Q  57 ctttcttcctcacacaaattctaaatccaccgctgccatcatgtagatcaactagatggtggtgcgaagagggtctttgtcctctgcaccaccgtatctt 156  Q
    ||||||||||||||||||||| ||||||  ||  ||| ||||||||||||| | ||||||||| ||| |||||||| ||||||| ||||||||||| |||    
T  7272204 ctttcttcctcacacaaattccaaatccgtcgtcgccgtcatgtagatcaaatggatggtggtccgatgagggtctctgtcctccgcaccaccgtacctt 7272105  T
Q  157 tccgacgtgcagtttctctctctgtcgtcgtaaatgttggtttgtgtttttggtgtttttattgtttc 224  Q
    |||||| | | ||| ||||||||||||||||||| ||||||||||||||||||||||||| |||||||    
T  7272104 tccgacatacggttgctctctctgtcgtcgtaaaggttggtttgtgtttttggtgttttttttgtttc 7272037  T

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Target: chr5; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 52 - 215
Target Start/End: Original strand, 6030074 - 6030237
Alignment:
Q  52 tactcctttcttcctcacacaaattctaaatccaccgctgccatcatgtagatcaactagatggtggtgcgaagagggtctttgtcctctgcaccaccgt 151  Q
    |||||||||||||||||||||||||| |||| |  ||| |||||||| |||||||| | ||||||||||||| |||||||| ||||||  ||||||||||    
T  6030074 tactcctttcttcctcacacaaattccaaattcgtcgccgccatcatatagatcaaatggatggtggtgcgatgagggtctctgtccttcgcaccaccgt 6030173  T
Q  152 atctttccgacgtgcagtttctctctctgtcgtcgtaaatgttggtttgtgtttttggtgtttt 215  Q
      ||||| |||||   ||||||||||||||| ||||||| ||||||||||||||||||| ||||    
T  6030174 gcctttctgacgtaaggtttctctctctgtcatcgtaaaggttggtttgtgtttttggtatttt 6030237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 52 - 164
Target Start/End: Complemental strand, 26657147 - 26657032
Alignment:
Q  52 tactcctttcttcctcacacaaattctaaatc---caccgctgccatcatgtagatcaactagatggtggtgcgaagagggtctttgtcctctgcaccac 148  Q
    |||||||||||||||||||||||||| |||||   |  ||  | | ||||||||||||| | ||||||||||||| || ||||||||||||| |||||||    
T  26657147 tactcctttcttcctcacacaaattccaaatctgtcgtcgtcgtcgtcatgtagatcaaatggatggtggtgcgatgaaggtctttgtcctccgcaccac 26657048  T
Q  149 cgtatctttccgacgt 164  Q
     ||| |||||||||||    
T  26657047 tgtacctttccgacgt 26657032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 52 - 164
Target Start/End: Complemental strand, 26928735 - 26928620
Alignment:
Q  52 tactcctttcttcctcacacaaattctaaatc---caccgctgccatcatgtagatcaactagatggtggtgcgaagagggtctttgtcctctgcaccac 148  Q
    |||||||||||||||||||||||||| |||||   |  ||  | | ||||||||||||| | ||||||||||||| || ||||||||||||| |||||||    
T  26928735 tactcctttcttcctcacacaaattccaaatctgtcgtcgtcgtcgtcatgtagatcaaatggatggtggtgcgatgaaggtctttgtcctccgcaccac 26928636  T
Q  149 cgtatctttccgacgt 164  Q
     ||| |||||||||||    
T  26928635 tgtacctttccgacgt 26928620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 109; Significance: 6e-55; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 35 - 216
Target Start/End: Complemental strand, 34118427 - 34118250
Alignment:
Q  35 taaacctaggaccgtcgtactcctttcttcctcacacaaattctaaatccaccgctgccatcatgtagatcaactagatggtggtgcgaagagggtcttt 134  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||| |||  | ||| ||||||||||| ||||||||||||||| |||||||| |    
T  34118427 taaacctaggaccgccgtactcctttcttcctcacacaaattctaaatcccccgtcggcataatgtagatcaaatagatggtggtgcgacgagggtctct 34118328  T
Q  135 gtcctctgcaccaccgtatctttccgacgtgcagtttctctctctgtcgtcgtaaatgttggtttgtgtttttggtgttttt 216  Q
    |||||||||||||||||| |||| |||||||||||| |||||||     ||||||| |||||||||||||||||||||||||    
T  34118327 gtcctctgcaccaccgtaccttttcgacgtgcagttgctctctca----tcgtaaaggttggtttgtgtttttggtgttttt 34118250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 35 - 224
Target Start/End: Complemental strand, 616157 - 615968
Alignment:
Q  35 taaacctaggaccgtcgtactcctttcttcctcacacaaattctaaatccaccgctgccatcatgtagatcaactagatggtggtgcgaagagggtcttt 134  Q
    |||||||||||| | | |||||||||||||||||||||||||| ||||||||||  ||| ||||||||||||| | ||||||||||||| |||||||| |    
T  616157 taaacctaggactgccctactcctttcttcctcacacaaattccaaatccaccgtcgccgtcatgtagatcaaatggatggtggtgcgatgagggtctct 616058  T
Q  135 gtcctctgcaccaccgtatctttccgacgtgcagtttctctctctgtcgtcgtaaatgttggtttgtgtttttggtgtttttattgtttc 224  Q
    |||||| ||||||||||| |||||||| || | ||| ||||||||||||||||||| |||||||||| |||||||||||||  |||||||    
T  616057 gtcctccgcaccaccgtacctttccgatgtacggttgctctctctgtcgtcgtaaaggttggtttgtatttttggtgttttgtttgtttc 615968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 22 - 177
Target Start/End: Original strand, 39708529 - 39708687
Alignment:
Q  22 actcatttctttctaaacctaggaccgtcgtactcctttcttcctcacacaaattctaaatccaccgctgccatc---atgtagatcaactagatggtgg 118  Q
    |||| ||||| |||| ||||||||||  || ||||||||||||||||| ||||||  |||||| |||| ||||||   |||||||| || | ||| ||||    
T  39708529 actcctttctctctatacctaggacctccgcactcctttcttcctcacccaaatttcaaatccgccgccgccatcgtcatgtagataaaatggattgtgg 39708628  T
Q  119 tgcgaagagggtctttgtcctctgcaccaccgtatctttccgacgtgcagtttctctct 177  Q
    ||| | |||||||||||||||| ||||||||||| ||||||||||| | ||| ||||||    
T  39708629 tgcaacgagggtctttgtcctccgcaccaccgtacctttccgacgtacggttgctctct 39708687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 102; Significance: 9e-51; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 36 - 229
Target Start/End: Complemental strand, 10409278 - 10409086
Alignment:
Q  36 aaacctaggaccgtcgtactcctttcttcctcacacaaattctaaatccaccgctgccatcatgtagatcaactagatggtggtgcgaagagggtctttg 135  Q
    |||||||| |||| || |||||||| ||||||| ||||||||||||||| |||| ||||||||||||||||| | ||||||||||||| |||||||| ||    
T  10409278 aaacctagaaccgccgcactccttttttcctcaaacaaattctaaatccgccgccgccatcatgtagatcaaatggatggtggtgcgacgagggtctctg 10409179  T
Q  136 tcctctgcaccaccgtatctttccgacgtgcagtttctctctctgtcgtcgtaaatgttggtttgtgtttttggtgtttttattgtttcctttg 229  Q
    ||||   |||||| ||||||||||||||||| ||| |||||||||| |||||||| |||||||| |||||||||||||||| ||||||| ||||    
T  10409178 tccttctcaccactgtatctttccgacgtgcggttgctctctctgttgtcgtaaaggttggtttatgtttttggtgttttt-ttgtttcgtttg 10409086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 99; Significance: 5e-49; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 22 - 216
Target Start/End: Complemental strand, 21881936 - 21881742
Alignment:
Q  22 actcatttctttctaaacctaggaccgtcgtactcctttcttcctcacacaaattctaaatccaccgctgccatcatgtagatcaactagatggtggtgc 121  Q
    |||| ||||| |||||||||||||||  |||||| ||||||||||| || |||||  |||||   ||| || |||||||||||||| | |||||||||||    
T  21881936 actcctttctctctaaacctaggaccaccgtactactttcttcctctcataaattacaaatctgtcgccgcaatcatgtagatcaaatggatggtggtgc 21881837  T
Q  122 gaagagggtctttgtcctctgcaccaccgtatctttccgacgtgcagtttctctctctgtcgtcgtaaatgttggtttgtgtttttggtgttttt 216  Q
    || |||||||| ||||||| ||||||||||| ||||||||||| ||||| ||||||| ||||||||||| |||||||||||||||||||||||||    
T  21881836 gacgagggtctatgtcctccgcaccaccgtacctttccgacgtacagttgctctctcggtcgtcgtaaaggttggtttgtgtttttggtgttttt 21881742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 35 - 216
Target Start/End: Complemental strand, 20741042 - 20740863
Alignment:
Q  35 taaacctaggaccgtcgtactcctttcttcctcacacaaattctaaatccaccgctgccatcatgtagatcaactagatggtggtgcgaagagggtcttt 134  Q
    ||||||||| ||||  |||||||||||||||||||||||||| ||||||| | |||| ||||||||||||||| | ||||||||||||| |||||||| |    
T  20741042 taaacctagaaccgctgtactcctttcttcctcacacaaattttaaatccgctgctgtcatcatgtagatcaaatggatggtggtgcgacgagggtctct 20740943  T
Q  135 gtcctctgcaccaccgtatctttccgacgtgcagtttctctctctgtcgtcgtaaatgttggtttgtgtttttggtgttttt 216  Q
     ||||  ||||||||||| |||||||||  || |||   ||||||||| ||||||| |||| ||||||||||||||||||||    
T  20740942 atccttcgcaccaccgtacctttccgacaggcggtt--gctctctgtcatcgtaaaggttgatttgtgtttttggtgttttt 20740863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 95; Significance: 1e-46; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 53 - 215
Target Start/End: Complemental strand, 4870022 - 4869861
Alignment:
Q  53 actcctttcttcctcacacaaattctaaatccaccgctgccatcatgtagatcaactagatggtggtgcgaagagggtctttgtcctctgcaccaccgta 152  Q
    |||||||||||||||||||||||| |||||||  ||| ||| ||||||||||||| | ||||||||||||| |||||||| ||||||| ||||||||||     
T  4870022 actcctttcttcctcacacaaattttaaatccgtcgc-gccgtcatgtagatcaaatggatggtggtgcgatgagggtctctgtcctccgcaccaccgtg 4869924  T
Q  153 tctttccgacgtgcagtttctctctctgtcgtcgtaaatgttggtttgtgtttttggtgtttt 215  Q
     ||||||||||| | ||||||||||||||| ||||||| ||||||||||||||||||||||||    
T  4869923 cctttccgacgtacggtttctctctctgtcatcgtaaaggttggtttgtgtttttggtgtttt 4869861  T

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Target: chr2; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 22 - 216
Target Start/End: Original strand, 1551244 - 1551435
Alignment:
Q  22 actcatttctttctaaacctaggaccgtcgtactcctttcttcctcacacaaattctaaatccaccgctgccatcatgtagatcaactagatggtggtgc 121  Q
    |||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||| |||||   ||    ||||||||||||||| | |||||||||||    
T  1551244 actcctttctttctaaacctagaaccgttgtactcctttcttcctcacacaaattccaaatctgtcgtcatcatcatgtagatcaaatggatggtggtgc 1551343  T
Q  122 gaagagggtctttgtcctctgcaccaccgtatctttccgacgtgcagtttctctctctgtcgtcgtaaatgttggtttgtgtttttggtgttttt 216  Q
    || |||||||||||||||  ||||||||||| ||||||||||||| |||   ||||| ||||||||||| ||||||||||| |||||||||||||    
T  1551344 gacgagggtctttgtccttcgcaccaccgtacctttccgacgtgcggtt--gctctccgtcgtcgtaaaggttggtttgtg-ttttggtgttttt 1551435  T

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Target: chr2; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 22 - 207
Target Start/End: Complemental strand, 17375741 - 17375555
Alignment:
Q  22 actcatttctttctaaacctaggaccgtcgtactcctttcttcctcacacaaattctaaatccaccgctgccatcatgtagatcaactagatggtggtgc 121  Q
    |||| ||||| |||||| ||||||||| ||||||||||| | ||||||||||||||||||| |  |||||||||||||| |||||| | |||||||||||    
T  17375741 actcctttctctctaaatctaggaccgccgtactcctttttgcctcacacaaattctaaattcgtcgctgccatcatgtggatcaaatggatggtggtgc 17375642  T
Q  122 gaagagggtctttgtcctctgcaccaccgtatctttccgacgtgcagtttctctctctg-tcgtcgtaaatgttggtttgtgttttt 207  Q
    || |||||||| ||||||| ||||| | ||| |||||||||||| |||| |||||| || |||||||||| | || |||||||||||    
T  17375641 gacgagggtctatgtcctccgcacctctgtacctttccgacgtgtagttgctctctttgttcgtcgtaaaggctgatttgtgttttt 17375555  T

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Target: chr2; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 22 - 216
Target Start/End: Original strand, 17281600 - 17281791
Alignment:
Q  22 actcatttctttctaaacctaggaccgtcgtactcctttcttcctcacacaaattctaaatccaccgctgccatcatgtagatcaactagatggtggtgc 121  Q
    |||| ||| ||||||||||||| |||| |||||||||||||||||| || |||||| |||||  |||  | ||||||||||||||| | |||||||||||    
T  17281600 actcctttttttctaaacctagaaccgccgtactcctttcttcctcgcataaattccaaatctgccgtcgtcatcatgtagatcaaatggatggtggtgc 17281699  T
Q  122 gaagagggtctttgtcctctgcaccaccgtatctttccgacgtgcagtttctctctctgtcgtcgtaaatgttggtttgtgtttttggtgttttt 216  Q
    || |||||||| |||||||  ||||  |||| ||||||||||||| |||   |||| |||||||||||| |||||||||||||||||||||||||    
T  17281700 gacgagggtctctgtcctc-acaccgtcgtacctttccgacgtgcggtt--gctctatgtcgtcgtaaaggttggtttgtgtttttggtgttttt 17281791  T

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Target: chr2; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 31 - 216
Target Start/End: Complemental strand, 4140855 - 4140672
Alignment:
Q  31 tttctaaacctaggaccgtcgtactcctttcttcctcacacaaattctaaatccaccgctgccatcatgtagatcaactagatggtggtgcgaagagggt 130  Q
    ||||||||||||| |||| |||||| ||||||||||||||||||||| |||||| ||| || ||||||||||||||| | ||||||||||| |  |||||    
T  4140855 tttctaaacctagaaccgccgtacttctttcttcctcacacaaattccaaatccgccgttgtcatcatgtagatcaaatggatggtggtgcaacaagggt 4140756  T
Q  131 ctttgtcctctgcaccaccgtatctttccgacgtgcagtttctctctctgtcgtcgtaaatgttggtttgtgtttttggtgttttt 216  Q
    || ||||||| ||||    ||| |||||  |||||| |||   |||| |||||||||||| |||| ||||||||||||||||||||    
T  4140755 ctctgtcctccgcactgttgtacctttctaacgtgcggtt--gctctatgtcgtcgtaaaggttgatttgtgtttttggtgttttt 4140672  T

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Target: chr2; HSP #6
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 39 - 216
Target Start/End: Complemental strand, 34660645 - 34660468
Alignment:
Q  39 cctaggaccgtcgtactcctttcttcctcacacaaattctaaatccaccg---ctgccatcatgtagatcaactagatggtggtgcgaagagggtctttg 135  Q
    |||||||| | | |||||||||||||||||||||||||| ||||||  ||   | ||| |||| |||||||| | |||||||||| || |||||||||||    
T  34660645 cctaggactgccctactcctttcttcctcacacaaattccaaatccgtcgtcgccgccgtcatatagatcaaatggatggtggtgtgatgagggtctttg 34660546  T
Q  136 tcctctgcaccaccgtatctttccgacgtgcagtttctctctctgtcgtcgtaaatgttggtttgtgtttttggtgttttt 216  Q
    ||||| |||||||| || |||||||| || |  ||   |||||| |||| ||||| |||||||||||||||||||||||||    
T  34660545 tcctccgcaccaccatacctttccgatgtacgatt--gctctctatcgt-gtaaaggttggtttgtgtttttggtgttttt 34660468  T

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Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 154 - 216
Target Start/End: Complemental strand, 1895746 - 1895686
Alignment:
Q  154 ctttccgacgtgcagtttctctctctgtcgtcgtaaatgttggtttgtgtttttggtgttttt 216  Q
    ||||||||||||| ||| |||||| |  ||||||||| |||||||||||||||||||||||||    
T  1895746 ctttccgacgtgcggttgctctctat--cgtcgtaaaggttggtttgtgtttttggtgttttt 1895686  T

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Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 35 - 76
Target Start/End: Complemental strand, 1895811 - 1895770
Alignment:
Q  35 taaacctaggaccgtcgtactcctttcttcctcacacaaatt 76  Q
    ||||||||| |||| |||||||||||||||||||||||||||    
T  1895811 taaacctagaaccggcgtactcctttcttcctcacacaaatt 1895770  T

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Target: chr3 (Bit Score: 94; Significance: 5e-46; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 35 - 224
Target Start/End: Original strand, 18269516 - 18269705
Alignment:
Q  35 taaacctaggaccgtcgtactcctttcttcctcacacaaattctaaatccaccgctgccatcatgtagatcaactagatggtggtgcgaagagggtcttt 134  Q
    |||||||||||| ||| ||||||||||| |||||||||||||| ||||||  ||  ||||||||||||||||| |  |||||||||||| |||||||| |    
T  18269516 taaacctaggactgtcctactcctttctccctcacacaaattccaaatccgtcgtcgccatcatgtagatcaaatgaatggtggtgcgatgagggtctct 18269615  T
Q  135 gtcctctgcaccaccgtatctttccgacgtgcagtttctctctctgtcgtcgtaaatgttggtttgtgtttttggtgtttttattgtttc 224  Q
    |||||| ||||||||||| ||||||||||| | ||| |||||||||||||| |||| |||| ||||| |||||||||||||  |||||||    
T  18269616 gtcctccgcaccaccgtacctttccgacgtacggttgctctctctgtcgtcataaaggttgatttgtatttttggtgttttgtttgtttc 18269705  T

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Target: chr7 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 22 - 229
Target Start/End: Complemental strand, 3303046 - 3302836
Alignment:
Q  22 actcatttctttctaaacctaggaccgtcgtactcctttcttcctcacacaaattctaaatccaccgctgccatcatgtagatcaacta---gatggtgg 118  Q
    |||| ||||| |||||| |||| ||||||||||| ||||||| |||||||||||| ||||| |  ||| ||||||||||||||||| |    ||||||||    
T  3303046 actcctttctctctaaatctagaaccgtcgtacttctttctttctcacacaaattttaaattcgtcgccgccatcatgtagatcaaatgacggatggtgg 3302947  T
Q  119 tgcgaagagggtctttgtcctctgcaccaccgtatctttccgacgtgcagtttctctctctgtcgtcgtaaatgttggtttgtgtttttggtgtttttat 218  Q
    ||| | |||||||| || |||||||| ||||||| ||||||||||| | ||| | |||||||| |||||||| ||||||||||||||||||||||||| |    
T  3302946 tgcaacgagggtctctgccctctgcatcaccgtacctttccgacgttcggttgcgctctctgttgtcgtaaaggttggtttgtgtttttggtgttttttt 3302847  T
Q  219 tgtttcctttg 229  Q
    |||||| ||||    
T  3302846 tgtttcgtttg 3302836  T

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