View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16611_low_31 (Length: 216)

Name: NF16611_low_31
Description: NF16611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16611_low_31
NF16611_low_31
[»] chr6 (36 HSPs)
chr6 (1-201)||(26802201-26802404)
chr6 (2-201)||(28786041-28786239)
chr6 (2-201)||(27604931-27605135)
chr6 (2-200)||(27725071-27725267)
chr6 (2-201)||(27228997-27229193)
chr6 (2-201)||(28780902-28781100)
chr6 (1-201)||(26655752-26655951)
chr6 (1-201)||(26761723-26761922)
chr6 (2-190)||(27698720-27698906)
chr6 (2-201)||(27718605-27718803)
chr6 (2-181)||(27611228-27611406)
chr6 (2-179)||(28792184-28792360)
chr6 (1-141)||(27338290-27338430)
chr6 (1-141)||(27399030-27399170)
chr6 (1-196)||(27427828-27428020)
chr6 (2-101)||(26884025-26884124)
chr6 (2-201)||(26823609-26823801)
chr6 (2-133)||(26622806-26622937)
chr6 (2-133)||(26728784-26728915)
chr6 (2-127)||(31284124-31284249)
chr6 (2-81)||(27531423-27531502)
chr6 (2-127)||(27593246-27593371)
chr6 (2-125)||(26861454-26861577)
chr6 (2-127)||(27678782-27678907)
chr6 (3-127)||(27677841-27677965)
chr6 (3-109)||(28098596-28098702)
chr6 (6-127)||(27706632-27706753)
chr6 (2-108)||(26646334-26646440)
chr6 (2-108)||(26752302-26752408)
chr6 (10-101)||(28325343-28325434)
chr6 (13-99)||(26342171-26342257)
chr6 (169-201)||(27338450-27338482)
chr6 (169-201)||(27399190-27399222)
chr6 (11-98)||(28226815-28226902)
chr6 (4-69)||(26048739-26048804)
chr6 (4-69)||(26069908-26069973)
[»] scaffold0349 (3 HSPs)
scaffold0349 (2-200)||(3648-3844)
scaffold0349 (2-190)||(14581-14767)
scaffold0349 (36-201)||(8061-8225)
[»] scaffold0277 (2 HSPs)
scaffold0277 (2-201)||(13858-14056)
scaffold0277 (2-201)||(4897-5100)
[»] scaffold1254 (1 HSPs)
scaffold1254 (2-201)||(143-334)
[»] scaffold0419 (1 HSPs)
scaffold0419 (2-201)||(7295-7486)
[»] chr4 (7 HSPs)
chr4 (2-199)||(18699613-18699807)
chr4 (2-201)||(18655690-18655886)
chr4 (2-201)||(18679780-18679976)
chr4 (2-201)||(18731717-18731913)
chr4 (2-133)||(18724298-18724429)
chr4 (1-196)||(17989262-17989454)
chr4 (1-196)||(18073535-18073727)
[»] scaffold0003 (1 HSPs)
scaffold0003 (1-196)||(59343-59535)
[»] chr1 (3 HSPs)
chr1 (7-147)||(28164580-28164720)
chr1 (7-101)||(28127898-28127992)
chr1 (2-127)||(268570-268695)
[»] chr8 (2 HSPs)
chr8 (2-127)||(29273996-29274121)
chr8 (3-87)||(31903727-31903811)
[»] scaffold0038 (2 HSPs)
scaffold0038 (10-101)||(116658-116749)
scaffold0038 (11-98)||(27313-27400)
[»] chr2 (1 HSPs)
chr2 (13-89)||(3279562-3279638)


Alignment Details
Target: chr6 (Bit Score: 169; Significance: 8e-91; HSPs: 36)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 26802404 - 26802201
Alignment:
Q  1 ataagagccttgtagagattgcccgtaaaaccgtaccgagtgtcagtgcccctaaaactgaggaacacttggtaagtgaatccataagaaaatgaagagg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26802404 ataagagccttgtagagattgcccgtaaaaccgtaccgagtgtcagtgcccctaaaactgaggaacacttggtaagtgaatccataagaaaatgaagagg 26802305  T
Q  101 atgaggaaggagactgcatagccatgaaaattgtgagaaattggatg---nnnnnnngagtttgagaatgcagaatatgaatgagtaagtttttgtggtc 197  Q
    |||||||||||||||||||||||||||||||||||||||||||||||          |||||||||||||||||||||||||||||||||||||||||||    
T  26802304 atgaggaaggagactgcatagccatgaaaattgtgagaaattggatgaaaaaaaaaagagtttgagaatgcagaatatgaatgagtaagtttttgtggtc 26802205  T
Q  198 tgtg 201  Q
    ||||    
T  26802204 tgtg 26802201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 2 - 201
Target Start/End: Complemental strand, 28786239 - 28786041
Alignment:
Q  2 taagagccttgtagagattgcccgtaaaaccgtaccgagtgtcagtgcccctaaaactgaggaacacttggtaagtgaatccataagaaaatgaagagga 101  Q
    ||||||||||||||||||| || ||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  28786239 taagagccttgtagagatttccggtaaaaccgtggcgagtgtcagtgcccctaaaactgaggaacacttggtaagtgaatccataggaaaatgaagagga 28786140  T
Q  102 tgaggaaggagactgcatagccatgaaaattgtgagaaattggatgnnnnnnngagtttgagaatgcagaatatgaatgagtaagtttttgtggtctgtg 201  Q
    ||||||||| || || |||||||| | ||||| |||||||||||||       |||||||||||| ||||||||||||||||  ||||||||||||||||    
T  28786139 tgaggaaggtgattgtatagccataagaattgagagaaattggatg-aaaaaagagtttgagaattcagaatatgaatgagtttgtttttgtggtctgtg 28786041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 2 - 201
Target Start/End: Original strand, 27604931 - 27605135
Alignment:
Q  2 taagagccttgtagagattgcccgtaaaaccgtaccgagtgtcagtgcccctaaaactgaggaacacttggtaagtgaatccataagaaaatgaa----- 96  Q
    |||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| |||| |||||||||         
T  27604931 taagagccttgtagagattgccggtaaaaccgtatcgagtgtcagtgcccctaaaactaaggaacacttggtaagtgaatgcataggaaaatgaagagga 27605030  T
Q  97 -gaggatgaggaaggagactgcatagccatgaaaattgtgagaaattggatgnnnnnnngagtttgagaatgcagaatatgaatgagtaagtttttgtgg 195  Q
     ||||||||||||||  | ||||||||||||| ||||| |||||||||||||       |||||||||||||||||||||||||||||||||||||||||    
T  27605031 tgaggatgaggaaggtaattgcatagccatgagaattgagagaaattggatg-aaaaaagagtttgagaatgcagaatatgaatgagtaagtttttgtgg 27605129  T
Q  196 tctgtg 201  Q
    ||||||    
T  27605130 tctgtg 27605135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 2 - 200
Target Start/End: Original strand, 27725071 - 27725267
Alignment:
Q  2 taagagccttgtagagattgcccgtaaaaccgtaccgagtgtcagtgcccctaaaactgaggaacacttggtaagtgaatccataagaaaatgaagagga 101  Q
    ||||||||||||||||||| || |||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||    
T  27725071 taagagccttgtagagatttccggtaaaaccgtgccgagtgtcagtgcccctaaaactaaggaacacttggtaagtgaatccataggaaaatgaagagga 27725170  T
Q  102 tgaggaaggagactgcatagccatgaaaattgtgagaaattggatgnnnnnnngagtttgagaatgcagaatatgaatgagtaagtttttgtggtctgt 200  Q
    ||||||||| || || |||||||||| ||||| ||||||| |||||       |||||||||||||||||||||||||| |||| ||||||||||||||    
T  27725171 tgaggaaggtgattgtatagccatgacaattgagagaaataggatg-aaaaaagagtttgagaatgcagaatatgaatg-gtaaatttttgtggtctgt 27725267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 2 - 201
Target Start/End: Complemental strand, 27229193 - 27228997
Alignment:
Q  2 taagagccttgtagagattgcccgtaaaaccgtaccgagtgtcagtgcccctaaaactgaggaacacttggtaagtgaatccataagaaaatgaagagga 101  Q
    |||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| | ||||||||||||||    
T  27229193 taagagccttgtagagattgccggtaaaaccgtgccgagtgtcagtgcccctaaaactaaggaacacttggtaagtgaatccaaaggaaaatgaagagga 27229094  T
Q  102 tgaggaaggagactgcatagccatgaaaattgtgagaaattggatgnnnnnnngagtttgagaatgcagaatatgaatgagtaagtttttgtggtctgtg 201  Q
     |||||||| || || |||||||||| | ||| |||||||||||||       |||||| ||||||||||||||||||||||| ||||||||||| ||||    
T  27229093 agaggaaggtgattgtatagccatgagacttgagagaaattggatg---aaaagagttttagaatgcagaatatgaatgagtatgtttttgtggtatgtg 27228997  T

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Target: chr6; HSP #6
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 2 - 201
Target Start/End: Complemental strand, 28781100 - 28780902
Alignment:
Q  2 taagagccttgtagagattgcccgtaaaaccgtaccgagtgtcagtgcccctaaaactgaggaacacttggtaagtgaatccataagaaaatgaagagga 101  Q
    |||||||||||||||||||||| ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||| || | ||||||||||||||    
T  28781100 taagagccttgtagagattgccggtaaaaccgtggcgagtgtcagtgcccctaaaactgaggaacacttggtaagtgaatgcagaggaaaatgaagagga 28781001  T
Q  102 tgaggaaggagactgcatagccatgaaaattgtgagaaattggatgnnnnnnngagtttgagaatgcagaatatgaatgagtaagtttttgtggtctgtg 201  Q
     ||||||||  | ||||||||||||| ||||| |||||||||||||       |||||||||||| ||||||||||||||||  ||||||||||||||||    
T  28781000 agaggaaggtaattgcatagccatgataattgagagaaattggatg-aaaaaagagtttgagaattcagaatatgaatgagtttgtttttgtggtctgtg 28780902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 26655951 - 26655752
Alignment:
Q  1 ataagagccttgtagagattgcccgtaaaaccgtaccgagtgtcagtgcccctaaaactgaggaacacttggtaagtgaatccataagaaaatgaagagg 100  Q
    ||||||||||||||||||||||| |||||||||| ||| |||||| ||||||||||||||||||||||||||||  | || ||||| |||||||||||||    
T  26655951 ataagagccttgtagagattgccggtaaaaccgtgccgggtgtcaatgcccctaaaactgaggaacacttggtatttaaacccataggaaaatgaagagg 26655852  T
Q  101 atgaggaaggagactgcatagccatgaaaattgtgagaaattggatgnnnnnnngagtttgagaatgcagaatatgaatgagtaagtttttgtggtctgt 200  Q
    |||||||||| || || |||||||||| ||||| |||||| ||||||       ||||||| ||||||||||||||||||||||||||||||||||||||    
T  26655851 atgaggaaggtgattgtatagccatgagaattgagagaaaatggatg-aaaaaagagtttgggaatgcagaatatgaatgagtaagtttttgtggtctgt 26655753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 26761922 - 26761723
Alignment:
Q  1 ataagagccttgtagagattgcccgtaaaaccgtaccgagtgtcagtgcccctaaaactgaggaacacttggtaagtgaatccataagaaaatgaagagg 100  Q
    ||||||||||||||||||||||| |||||||||| ||| |||||| ||||||||||||||||||||||||||||  | || ||||| |||||||||||||    
T  26761922 ataagagccttgtagagattgccggtaaaaccgtgccgggtgtcaatgcccctaaaactgaggaacacttggtatttaaacccataggaaaatgaagagg 26761823  T
Q  101 atgaggaaggagactgcatagccatgaaaattgtgagaaattggatgnnnnnnngagtttgagaatgcagaatatgaatgagtaagtttttgtggtctgt 200  Q
    |||||||||| || || |||||||||| ||||| |||||| ||||||       ||||||| ||||||||||||||||||||||||||||||||||||||    
T  26761822 atgaggaaggtgattgtatagccatgagaattgagagaaaatggatg-aaaaaagagtttgggaatgcagaatatgaatgagtaagtttttgtggtctgt 26761724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 2 - 190
Target Start/End: Original strand, 27698720 - 27698906
Alignment:
Q  2 taagagccttgtagagattgcccgtaaaaccgtaccgagtgtcagtgcccctaaaactgaggaacacttggtaagtgaatccataagaaaatgaagagga 101  Q
    ||||||||||||||||||| || |||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| |||    
T  27698720 taagagccttgtagagatttccggtaaaaccgtgccgagtgtcagtgcccctaaaactgatgaacacttggtaagtgaatccataggaaaatgaagtgga 27698819  T
Q  102 tgaggaaggagactgcatagccatgaaaattgtgagaaattggatgnnnnnnngagtttgagaatgcagaatatgaatgagtaagtttt 190  Q
    ||||||||| || || |||||||||| ||||| ||||||| |||||       ||||||||||||||||||||||||||||||| ||||    
T  27698820 tgaggaaggtgattgtatagccatgagaattgagagaaataggatg--aaaaagagtttgagaatgcagaatatgaatgagtaaatttt 27698906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 2 - 201
Target Start/End: Original strand, 27718605 - 27718803
Alignment:
Q  2 taagagccttgtagagattgcccgtaaaaccgtaccgagtgtcagtgcccctaaaactgaggaacacttggtaagtgaatccataagaaaatgaagagga 101  Q
    ||||||||||||||||||| || ||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||  || |||||||||||    
T  27718605 taagagccttgtagagatttccggtaaaactgtgccgagtgtcagtgcccctaaaactgaggaacacttggtaagtgaatccatgggagaatgaagagga 27718704  T
Q  102 tgaggaaggagactgcatagccatgaaaattgtgagaaattggatgnnnnnnngagtttgagaatgcagaatatgaatgagtaagtttttgtggtctgtg 201  Q
    ||||||||| || || |||||||||| ||||| ||||||| |||||       ||||||||||||||||||||||||||||| | |||||||| ||||||    
T  27718705 tgaggaaggtgattgtatagccatgagaattgagagaaataggatg-aaaaaagagtttgagaatgcagaatatgaatgagtgaatttttgtgttctgtg 27718803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 2 - 181
Target Start/End: Original strand, 27611228 - 27611406
Alignment:
Q  2 taagagccttgtagagattgcccgtaaaaccgtaccgagtgtcagtgcccctaaaactgaggaacacttggtaagtgaatccataagaaaatgaagagga 101  Q
    ||||||||||||||||||| || ||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||    
T  27611228 taagagccttgtagagatttccggtaaaaccgtggcgagtgtcagtgcccctaaaactgaggaacacttggtaagtgaatccataggaaaatgaagaaga 27611327  T
Q  102 tgaggaaggagactgcatagccatgaaaattgtgagaaattggatgnnnnnnngagtttgagaatgcagaatatgaatga 181  Q
     |||||||   | ||||||||||||||||||| |||||||||||||       |||||||||||||||||||||||||||    
T  27611328 agaggaagctaattgcatagccatgaaaattgagagaaattggatg-aaaaaagagtttgagaatgcagaatatgaatga 27611406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 2 - 179
Target Start/End: Complemental strand, 28792360 - 28792184
Alignment:
Q  2 taagagccttgtagagattgcccgtaaaaccgtaccgagtgtcagtgcccctaaaactgaggaacacttggtaagtgaatccataagaaaatgaagagga 101  Q
    ||||||||||||||||||| || ||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  28792360 taagagccttgtagagatttccggtaaaaccgtggcgagtgtcagtgcccctaaaactgaggaacacttggtaagtgaatccataggaaaatgaagagga 28792261  T
Q  102 tgaggaaggagactgcatagccatgaaaattgtgagaaattggatgnnnnnnngagtttgagaatgcagaatatgaat 179  Q
    ||||||||| || || |||||||| | ||||| |||||||||||||       |||||||||||| ||||||||||||    
T  28792260 tgaggaaggtgattgtatagccataagaattgagagaaattggatg-aaaaaagagtttgagaattcagaatatgaat 28792184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 27338290 - 27338430
Alignment:
Q  1 ataagagccttgtagagattgcccgtaaaaccgtaccgagtgtcagtgcccctaaaactgaggaacacttggtaagtgaatccataagaaaatgaagagg 100  Q
    ||||||||||||||||||||||| |||||||||||  |||||||| || ||||||||||||||||||| |||||  |||| ||| | |||| ||||||||    
T  27338290 ataagagccttgtagagattgccggtaaaaccgtaaagagtgtcaatgtccctaaaactgaggaacacatggtatttgaacccagaggaaattgaagagg 27338389  T
Q  101 atgaggaaggagactgcatagccatgaaaattgtgagaaat 141  Q
    | |||||| | || ||||||||||||| ||||| |||||||    
T  27338390 aagaggaaagtgattgcatagccatgagaattgagagaaat 27338430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 27399030 - 27399170
Alignment:
Q  1 ataagagccttgtagagattgcccgtaaaaccgtaccgagtgtcagtgcccctaaaactgaggaacacttggtaagtgaatccataagaaaatgaagagg 100  Q
    ||||||||||||||||||||||| |||||||||||  |||||||| || ||||||||||||||||||| |||||  |||| ||| | |||| ||||||||    
T  27399030 ataagagccttgtagagattgccggtaaaaccgtaaagagtgtcaatgtccctaaaactgaggaacacatggtatttgaacccagaggaaattgaagagg 27399129  T
Q  101 atgaggaaggagactgcatagccatgaaaattgtgagaaat 141  Q
    | |||||| | || ||||||||||||| ||||| |||||||    
T  27399130 aagaggaaagtgattgcatagccatgagaattgagagaaat 27399170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 27427828 - 27428020
Alignment:
Q  1 ataagagccttgtagagattgcccgtaaaaccgtaccgagtgtcagtgcccctaaaactgaggaacacttggtaagtgaatccataagaaaatgaagagg 100  Q
    |||||||||||  |||||||||| || ||||||||||||||||| |||||| || || |||||||||| | |||| ||||| |||| |||||||||||||    
T  27427828 ataagagccttcaagagattgccggtgaaaccgtaccgagtgtcggtgcccttacaaatgaggaacacatcgtaactgaatgcataggaaaatgaagagg 27427927  T
Q  101 atgaggaaggagactgcatagccatgaaaattgtgagaaattggatgnnnnnnngagtttgagaatgcagaatatgaatgagtaagtttttgtggt 196  Q
    |  || ||||  | ||||| ||||||| ||||| |||||||  ||||       |||||||||||||||||||||||||||| | |||||||||||    
T  27427928 aatagaaaggtaattgcatggccatgagaattgagagaaataagatg---agaagagtttgagaatgcagaatatgaatgaggatgtttttgtggt 27428020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 2 - 101
Target Start/End: Complemental strand, 26884124 - 26884025
Alignment:
Q  2 taagagccttgtagagattgcccgtaaaaccgtaccgagtgtcagtgcccctaaaactgaggaacacttggtaagtgaatccataagaaaatgaagagga 101  Q
    ||||||||||||||||||| || || ||||| |||||||||||| | || || |||||||||||||||||||||||||||||||| ||||||||||||||    
T  26884124 taagagccttgtagagatttccagtgaaaccataccgagtgtcacttcctctgaaactgaggaacacttggtaagtgaatccataggaaaatgaagagga 26884025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 2 - 201
Target Start/End: Complemental strand, 26823801 - 26823609
Alignment:
Q  2 taagagccttgtagagattgcccgtaaaaccgtaccgagtgtcagtgcccctaaaactgaggaacacttggtaagtgaatccataagaaaatgaagagga 101  Q
    |||||||||||||||||||||| |||||  | ||||||||||||| ||| ||||||||||| |||||||||||  ||||  |||| |||| ||||         
T  26823801 taagagccttgtagagattgccggtaaattcataccgagtgtcagcgcctctaaaactgagaaacacttggtatttgaaatcatatgaaactgaa----- 26823707  T
Q  102 tgaggaaggagactgcatagccatgaaaattgtgagaaattggatgnnnnnnngagtttgagaatgcagaatatgaatgagtaagtttttgtggtctgtg 201  Q
     |||||||  |||||||||||||||| ||||| ||||||||||| |       |||||||||||||||||||||||||||||| |||  |||||| ||||    
T  26823706 -gaggaagttgactgcatagccatgagaattgagagaaattggacg-aagaaagagtttgagaatgcagaatatgaatgagtatgttactgtggtgtgtg 26823609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 2 - 133
Target Start/End: Complemental strand, 26622937 - 26622806
Alignment:
Q  2 taagagccttgtagagattgcccgtaaaaccgtaccgagtgtcagtgcccctaaaactgaggaacacttggtaagtgaatccataagaaaatgaagagga 101  Q
    ||||||||||||||||||| || || |||||||||||||||||| |||| || ||||| ||||||||||||||  |||||  ||| |||| |||||||||    
T  26622937 taagagccttgtagagatttccagtgaaaccgtaccgagtgtcactgcctctgaaacttaggaacacttggtatttgaattgataggaaattgaagagga 26622838  T
Q  102 tgaggaaggagactgcatagccatgaaaattg 133  Q
     ||||| || || ||||||||||||| |||||    
T  26622837 agaggatggtgattgcatagccatgataattg 26622806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 2 - 133
Target Start/End: Complemental strand, 26728915 - 26728784
Alignment:
Q  2 taagagccttgtagagattgcccgtaaaaccgtaccgagtgtcagtgcccctaaaactgaggaacacttggtaagtgaatccataagaaaatgaagagga 101  Q
    ||||||||||||||||||| || || |||||||||||||||||| |||| || ||||| ||||||||||||||  |||||  ||| |||| |||||||||    
T  26728915 taagagccttgtagagatttccagtgaaaccgtaccgagtgtcactgcctctgaaacttaggaacacttggtatttgaattgataggaaattgaagagga 26728816  T
Q  102 tgaggaaggagactgcatagccatgaaaattg 133  Q
     ||||| || || ||||||||||||| |||||    
T  26728815 agaggatggtgattgcatagccatgataattg 26728784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 2 - 127
Target Start/End: Complemental strand, 31284249 - 31284124
Alignment:
Q  2 taagagccttgtagagattgcccgtaaaaccgtaccgagtgtcagtgcccctaaaactgaggaacacttggtaagtgaatccataagaaaatgaagagga 101  Q
    |||||||||||||||||||||| || ||||| |||||||||||| | ||||| ||||| ||||| ||||||||  ||||| |||| |||| |||||||||    
T  31284249 taagagccttgtagagattgccggtgaaaccataccgagtgtcacttcccctgaaactaaggaatacttggtatttgaatacataggaaattgaagagga 31284150  T
Q  102 tgaggaaggagactgcatagccatga 127  Q
     |||||||  || |||||||||||||    
T  31284149 agaggaagatgattgcatagccatga 31284124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 2 - 81
Target Start/End: Original strand, 27531423 - 27531502
Alignment:
Q  2 taagagccttgtagagattgcccgtaaaaccgtaccgagtgtcagtgcccctaaaactgaggaacacttggtaagtgaat 81  Q
    ||||||||||||||||||| || ||||||||||  |||||||| | ||||||||||||||||||||||||||||||||||    
T  27531423 taagagccttgtagagatttccggtaaaaccgtggcgagtgtccgcgcccctaaaactgaggaacacttggtaagtgaat 27531502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 2 - 127
Target Start/End: Original strand, 27593246 - 27593371
Alignment:
Q  2 taagagccttgtagagattgcccgtaaaaccgtaccgagtgtcagtgcccctaaaactgaggaacacttggtaagtgaatccataagaaaatgaagagga 101  Q
    |||||||||||||||||||||| || |||||||||||||||||| | || || ||||||||||| ||||||||  || |  |||| |||| ||||| |||    
T  27593246 taagagccttgtagagattgccggtgaaaccgtaccgagtgtcacttcctctgaaactgaggaatacttggtatttgtaatcataggaaattgaagtgga 27593345  T
Q  102 tgaggaaggagactgcatagccatga 127  Q
     |||||||| || |||||||||||||    
T  27593346 agaggaaggtgattgcatagccatga 27593371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 2 - 125
Target Start/End: Complemental strand, 26861577 - 26861454
Alignment:
Q  2 taagagccttgtagagattgcccgtaaaaccgtaccgagtgtcagtgcccctaaaactgaggaacacttggtaagtgaatccataagaaaatgaagagga 101  Q
    ||||||||||||||||||| || |||||||| |||||||||||| | || || ||||||||||| || |||||  |||||||||| ||||  ||||||||    
T  26861577 taagagccttgtagagattaccggtaaaaccataccgagtgtcacttcctctgaaactgaggaatacctggtatttgaatccataggaaatggaagagga 26861478  T
Q  102 tgaggaaggagactgcatagccat 125  Q
     ||| |||| || |||||||||||    
T  26861477 agagcaaggtgattgcatagccat 26861454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 2 - 127
Target Start/End: Complemental strand, 27678907 - 27678782
Alignment:
Q  2 taagagccttgtagagattgcccgtaaaaccgtaccgagtgtcagtgcccctaaaactgaggaacacttggtaagtgaatccataagaaaatgaagagga 101  Q
    ||||||||||||||||||| || || |||||||||||||||||| | || || ||||||||||| ||||||||  || |  |||| |||| ||||| |||    
T  27678907 taagagccttgtagagattcccggtgaaaccgtaccgagtgtcacttcctctgaaactgaggaatacttggtatttgtactcataggaaattgaagtgga 27678808  T
Q  102 tgaggaaggagactgcatagccatga 127  Q
     |||||||| || |||||||||||||    
T  27678807 agaggaaggtgattgcatagccatga 27678782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 3 - 127
Target Start/End: Original strand, 27677841 - 27677965
Alignment:
Q  3 aagagccttgtagagattgcccgtaaaaccgtaccgagtgtcagtgcccctaaaactgaggaacacttggtaagtgaatccataagaaaatgaagaggat 102  Q
    ||||||||||||||||||||| || |||||||||||||||||| | || || ||| ||||||| ||||||||  || |  |||| |||| ||||| |||     
T  27677841 aagagccttgtagagattgccggtgaaaccgtaccgagtgtcacttcctctgaaattgaggaatacttggtatttgtactcataggaaattgaagtggaa 27677940  T
Q  103 gaggaaggagactgcatagccatga 127  Q
    |||||||| || |||||||||||||    
T  27677941 gaggaaggtgattgcatagccatga 27677965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 3 - 109
Target Start/End: Original strand, 28098596 - 28098702
Alignment:
Q  3 aagagccttgtagagattgcccgtaaaaccgtaccgagtgtcagtgcccctaaaactgaggaacacttggtaagtgaatccataagaaaatgaagaggat 102  Q
    |||||| ||||||||||| || |||||||| ||||||||||| |||||||||||| | || ||||| |  || |||||||||||||| ||||||||| |     
T  28098596 aagagctttgtagagatttccagtaaaaccataccgagtgtcggtgcccctaaaattaagaaacacgtcataggtgaatccataagagaatgaagagaaa 28098695  T
Q  103 gaggaag 109  Q
    |||||||    
T  28098696 gaggaag 28098702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 6 - 127
Target Start/End: Original strand, 27706632 - 27706753
Alignment:
Q  6 agccttgtagagattgcccgtaaaaccgtaccgagtgtcagtgcccctaaaactgaggaacacttggtaagtgaatccataagaaaatgaagaggatgag 105  Q
    |||||||||||||||||| || ||||||||||||||||||   || || ||||||||||| ||||||||  || |  |||| |||| ||||| ||| |||    
T  27706632 agccttgtagagattgcctgtgaaaccgtaccgagtgtcacctcctctgaaactgaggaatacttggtatttgtactcataggaaattgaagtggaagag 27706731  T
Q  106 gaaggagactgcatagccatga 127  Q
     |||| || |||||||||||||    
T  27706732 aaaggtgattgcatagccatga 27706753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 2 - 108
Target Start/End: Complemental strand, 26646440 - 26646334
Alignment:
Q  2 taagagccttgtagagattgcccgtaaaaccgtaccgagtgtcagtgcccctaaaactgaggaacacttggtaagtgaatccataagaaaatgaagagga 101  Q
    ||||||||||||||||||  || ||||||||||  ||||||||| ||||||| ||  ||||||| || ||||| |||||||| || |||| | |||||||    
T  26646440 taagagccttgtagagatgtccagtaaaaccgtcacgagtgtcactgcccctgaagttgaggaagacctggtaggtgaatccgtaggaaattaaagagga 26646341  T
Q  102 tgaggaa 108  Q
     ||||||    
T  26646340 agaggaa 26646334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 2 - 108
Target Start/End: Complemental strand, 26752408 - 26752302
Alignment:
Q  2 taagagccttgtagagattgcccgtaaaaccgtaccgagtgtcagtgcccctaaaactgaggaacacttggtaagtgaatccataagaaaatgaagagga 101  Q
    ||||||||||||||||||  || ||||||||||  ||||||||| ||||||| ||  ||||||| || ||||| |||||||| || |||| | |||||||    
T  26752408 taagagccttgtagagatgtccagtaaaaccgtcacgagtgtcactgcccctgaagttgaggaagacctggtaggtgaatccgtaggaaattaaagagga 26752309  T
Q  102 tgaggaa 108  Q
     ||||||    
T  26752308 agaggaa 26752302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 101
Target Start/End: Complemental strand, 28325434 - 28325343
Alignment:
Q  10 ttgtagagattgcccgtaaaaccgtaccgagtgtcagtgcccctaaaactgaggaacacttggtaagtgaatccataagaaaatgaagagga 101  Q
    ||||||||||| || |||||||| || ||||||||| | || |||||||| |||||||| |  || ||||||||||| ||||| ||||||||    
T  28325434 ttgtagagatttccagtaaaaccataacgagtgtcactacctctaaaactaaggaacacgtcataggtgaatccataggaaaaggaagagga 28325343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 13 - 99
Target Start/End: Original strand, 26342171 - 26342257
Alignment:
Q  13 tagagattgcccgtaaaaccgtaccgagtgtcagtgcccctaaaactgaggaacacttggtaagtgaatccataagaaaatgaagag 99  Q
    |||| |||||| |||||||| || |||||| || ||||||||||| |||||||||| |  || ||||||||||| || |||||||||    
T  26342171 tagatattgccagtaaaaccatagcgagtgccaatgcccctaaaattgaggaacacatcatatgtgaatccatatgagaatgaagag 26342257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 169 - 201
Target Start/End: Original strand, 27338450 - 27338482
Alignment:
Q  169 agaatatgaatgagtaagtttttgtggtctgtg 201  Q
    |||||||||||||||||||||||||||||||||    
T  27338450 agaatatgaatgagtaagtttttgtggtctgtg 27338482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 169 - 201
Target Start/End: Original strand, 27399190 - 27399222
Alignment:
Q  169 agaatatgaatgagtaagtttttgtggtctgtg 201  Q
    |||||||||||||||||||||||||||||||||    
T  27399190 agaatatgaatgagtaagtttttgtggtctgtg 27399222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 98
Target Start/End: Complemental strand, 28226902 - 28226815
Alignment:
Q  11 tgtagagattgcccgtaaaaccgtaccgagtgtcagtgcccctaaaactgaggaacacttggtaagtgaatccataagaaaatgaaga 98  Q
    |||||||||| || |||||||| || ||||||||| | || |||||||| |||||||| |  || |||||||||||||| || |||||    
T  28226902 tgtagagatttccagtaaaaccataacgagtgtcaatacctctaaaactaaggaacacgtcataggtgaatccataagagaaggaaga 28226815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 4 - 69
Target Start/End: Complemental strand, 26048804 - 26048739
Alignment:
Q  4 agagccttgtagagattgcccgtaaaaccgtaccgagtgtcagtgcccctaaaactgaggaacact 69  Q
    |||||||| |||||||| || ||||||  ||  ||||||||| ||||||| |||||||||||||||    
T  26048804 agagccttatagagattaccggtaaaattgttgcgagtgtcactgcccctgaaactgaggaacact 26048739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 4 - 69
Target Start/End: Complemental strand, 26069973 - 26069908
Alignment:
Q  4 agagccttgtagagattgcccgtaaaaccgtaccgagtgtcagtgcccctaaaactgaggaacact 69  Q
    |||||||| |||||||| || ||||||  ||  ||||||||| ||||||| |||||||||||||||    
T  26069973 agagccttatagagattaccggtaaaattgttgcgagtgtcactgcccctgaaactgaggaacact 26069908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 117; Significance: 9e-60; HSPs: 3)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 2 - 200
Target Start/End: Original strand, 3648 - 3844
Alignment:
Q  2 taagagccttgtagagattgcccgtaaaaccgtaccgagtgtcagtgcccctaaaactgaggaacacttggtaagtgaatccataagaaaatgaagagga 101  Q
    ||||||||||||||||||| || |||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||    
T  3648 taagagccttgtagagatttccggtaaaaccgtgccgagtgtcagtgcccctaaaactaaggaacacttggtaagtgaatccataggaaaatgaagagga 3747  T
Q  102 tgaggaaggagactgcatagccatgaaaattgtgagaaattggatgnnnnnnngagtttgagaatgcagaatatgaatgagtaagtttttgtggtctgt 200  Q
    ||||||||| || || |||||||||| ||||| ||||||| |||||       |||||||||||||||||||||||||| |||| ||||||||||||||    
T  3748 tgaggaaggtgattgtatagccatgacaattgagagaaataggatg-aaaaaagagtttgagaatgcagaatatgaatg-gtaaatttttgtggtctgt 3844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349; HSP #2
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 2 - 190
Target Start/End: Original strand, 14581 - 14767
Alignment:
Q  2 taagagccttgtagagattgcccgtaaaaccgtaccgagtgtcagtgcccctaaaactgaggaacacttggtaagtgaatccataagaaaatgaagagga 101  Q
    ||||||||||||||||||| || |||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| |||    
T  14581 taagagccttgtagagatttccggtaaaaccgtgccgagtgtcagtgcccctaaaactgatgaacacttggtaagtgaatccataggaaaatgaagtgga 14680  T
Q  102 tgaggaaggagactgcatagccatgaaaattgtgagaaattggatgnnnnnnngagtttgagaatgcagaatatgaatgagtaagtttt 190  Q
    ||||||||| || || |||||||||| ||||| ||||||| |||||       ||||||||||||||||||||||||||||||| ||||    
T  14681 tgaggaaggtgattgtatagccatgagaattgagagaaataggatg--aaaaagagtttgagaatgcagaatatgaatgagtaaatttt 14767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349; HSP #3
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 36 - 201
Target Start/End: Original strand, 8061 - 8225
Alignment:
Q  36 ccgagtgtcagtgcccctaaaactgaggaacacttggtaagtgaatccataagaaaatgaagaggatgaggaaggagactgcatagccatgaaaattgtg 135  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||  || |||||||||||||||||||| || || |||||||||| ||||| |    
T  8061 ccgagtgtcagtgcccctaaaactgaggaacacttggtaagtgaatccatgggagaatgaagaggatgaggaaggtgattgtatagccatgagaattgag 8160  T
Q  136 agaaattggatgnnnnnnngagtttgagaatgcagaatatgaatgagtaagtttttgtggtctgtg 201  Q
    |||||| |||||       ||||||||||||||||||||||||||||| | |||||||| ||||||    
T  8161 agaaataggatg-aaaaaagagtttgagaatgcagaatatgaatgagtgaatttttgtgttctgtg 8225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277 (Bit Score: 114; Significance: 5e-58; HSPs: 2)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 2 - 201
Target Start/End: Original strand, 13858 - 14056
Alignment:
Q  2 taagagccttgtagagattgcccgtaaaaccgtaccgagtgtcagtgcccctaaaactgaggaacacttggtaagtgaatccataagaaaatgaagagga 101  Q
    |||||||||||||||||||||| ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||| || | ||||||||||||||    
T  13858 taagagccttgtagagattgccggtaaaaccgtggcgagtgtcagtgcccctaaaactgaggaacacttggtaagtgaatgcagaggaaaatgaagagga 13957  T
Q  102 tgaggaaggagactgcatagccatgaaaattgtgagaaattggatgnnnnnnngagtttgagaatgcagaatatgaatgagtaagtttttgtggtctgtg 201  Q
     ||||||||  | ||||||||||||| ||||| |||||||||||||       |||||||||||| ||||||||||||||||  ||||||||||||||||    
T  13958 agaggaaggtaattgcatagccatgataattgagagaaattggatg-aaaaaagagtttgagaattcagaatatgaatgagtttgtttttgtggtctgtg 14056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 2 - 201
Target Start/End: Original strand, 4897 - 5100
Alignment:
Q  2 taagagccttgtagagattgcccgtaaaaccgtaccgagtgtcagtgcccctaaaactgaggaacacttggtaagtgaatccataagaaaatgaagagga 101  Q
    ||||||||||||||||||| || ||||||||||  ||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  4897 taagagccttgtagagatttccggtaaaaccgtggcgagtgtcaatgcccctaaaactgaggaacacttggtaagtgaatccataggaaaatgaagagga 4996  T
Q  102 tgaggaaggagactgcatagccatgaaaattgtgagaaattggatgnnnnnnngagtttgagaatgcagaatatg-----aatgagtaagtttttgtggt 196  Q
    ||||||||| || || |||||||| | ||||| |||||||||||||       |||||||||||| |||||||||     ||||| ||||||||||||||    
T  4997 tgaggaaggtgattgtatagccataagaattgagagaaattggatg-aaaaaagagtttgagaattcagaatatgaatttaatgaataagtttttgtggt 5095  T
Q  197 ctgtg 201  Q
    |||||    
T  5096 ctgtg 5100  T

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Target: scaffold1254 (Bit Score: 96; Significance: 3e-47; HSPs: 1)
Name: scaffold1254
Description:

Target: scaffold1254; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 2 - 201
Target Start/End: Original strand, 143 - 334
Alignment:
Q  2 taagagccttgtagagattgcccgtaaaaccgtaccgagtgtcagtgcccctaaaactgaggaacacttggtaagtgaatccataagaaaatgaagagga 101  Q
    |||||||||||||||||||||| ||||||||||  ||||||||||||||||||||||| ||||||||||||||||||||| |||| ||||||||||||||    
T  143 taagagccttgtagagattgccggtaaaaccgtggcgagtgtcagtgcccctaaaactaaggaacacttggtaagtgaatgcatatgaaaatgaagagga 242  T
Q  102 tgaggaaggagactgcatagccatgaaaattgtgagaaattggatgnnnnnnngagtttgagaatgcagaatatgaatgagtaagtttttgtggtctgtg 201  Q
     |||| ||| || ||||||||||||| ||||| |||||||| ||||       |||||||       |||||||||||||||||||||||||||||||||    
T  243 agagggaggtgattgcatagccatgagaattgagagaaattagatg-aaaaaagagtttg-------agaatatgaatgagtaagtttttgtggtctgtg 334  T

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Target: scaffold0419 (Bit Score: 96; Significance: 3e-47; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 2 - 201
Target Start/End: Complemental strand, 7486 - 7295
Alignment:
Q  2 taagagccttgtagagattgcccgtaaaaccgtaccgagtgtcagtgcccctaaaactgaggaacacttggtaagtgaatccataagaaaatgaagagga 101  Q
    |||||||||||||||||||||| ||||||||||  ||||||||||||||||||||||| ||||||||||||||||||||| |||| ||||||||||||||    
T  7486 taagagccttgtagagattgccggtaaaaccgtggcgagtgtcagtgcccctaaaactaaggaacacttggtaagtgaatgcatatgaaaatgaagagga 7387  T
Q  102 tgaggaaggagactgcatagccatgaaaattgtgagaaattggatgnnnnnnngagtttgagaatgcagaatatgaatgagtaagtttttgtggtctgtg 201  Q
     |||| ||| || ||||||||||||| ||||| |||||||| ||||       |||||||       |||||||||||||||||||||||||||||||||    
T  7386 agagggaggtgattgcatagccatgagaattgagagaaattagatg-aaaaaagagtttg-------agaatatgaatgagtaagtttttgtggtctgtg 7295  T

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Target: chr4 (Bit Score: 93; Significance: 2e-45; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 2 - 199
Target Start/End: Original strand, 18699613 - 18699807
Alignment:
Q  2 taagagccttgtagagattgcccgtaaaaccgtaccgagtgtcagtgcccctaaaactgaggaacacttggtaagtgaatccataagaaaatgaagagga 101  Q
    ||||||| |||||||||| ||| ||||||||||  ||||||||||||||||| || ||||||||||||||||||||||||| ||| ||||||||||||||    
T  18699613 taagagctttgtagagatggccagtaaaaccgtcacgagtgtcagtgcccctgaagctgaggaacacttggtaagtgaatcgataggaaaatgaagagga 18699712  T
Q  102 tgaggaaggagactgcatagccatgaaaattgtgagaaattggatgnnnnnnngagtttgagaatgcagaatatgaatgagtaagtttttgtggtctg 199  Q
    ||||||||| || ||||||||||||| ||||| |||||| | ||||       |||||||||||||||||||||||  |  |||||||||||||||||    
T  18699713 tgaggaaggtgattgcatagccatgagaattgagagaaactagatg-aaaaaagagtttgagaatgcagaatatga--ggttaagtttttgtggtctg 18699807  T

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Target: chr4; HSP #2
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 2 - 201
Target Start/End: Original strand, 18655690 - 18655886
Alignment:
Q  2 taagagccttgtagagattgcccgtaaaaccgtaccgagtgtcagtgcccctaaaactgaggaacacttggtaagtgaatccataagaaaatgaagagga 101  Q
    ||||||| ||||||||||  || ||||||||||  ||||||||| ||||||| || ||||||||||||||||||||||||| ||| ||||||||||||||    
T  18655690 taagagctttgtagagatgcccagtaaaaccgttacgagtgtcactgcccctgaagctgaggaacacttggtaagtgaatcgataggaaaatgaagagga 18655789  T
Q  102 tgaggaaggagactgcatagccatgaaaattgtgagaaattggatgnnnnnnngagtttgagaatgcagaatatgaatgagtaagtttttgtggtctgtg 201  Q
    ||||||||| || ||| ||||||||||||||| |||||| ||||||       |||||||||||||||||||||||  |  |||||||||||||| ||||    
T  18655790 tgaggaaggtgattgcctagccatgaaaattgagagaaactggatg-aaaaaagagtttgagaatgcagaatatga--gtttaagtttttgtggtatgtg 18655886  T

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Target: chr4; HSP #3
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 2 - 201
Target Start/End: Original strand, 18679780 - 18679976
Alignment:
Q  2 taagagccttgtagagattgcccgtaaaaccgtaccgagtgtcagtgcccctaaaactgaggaacacttggtaagtgaatccataagaaaatgaagagga 101  Q
    ||||||||||||||||||  || ||||||||||  ||||||||| ||||||| || ||||||||||||||||||||||||| ||| |||||||||||| |    
T  18679780 taagagccttgtagagatgaccagtaaaaccgttacgagtgtcactgcccctgaagctgaggaacacttggtaagtgaatcgataggaaaatgaagagaa 18679879  T
Q  102 tgaggaaggagactgcatagccatgaaaattgtgagaaattggatgnnnnnnngagtttgagaatgcagaatatgaatgagtaagtttttgtggtctgtg 201  Q
    ||||||||| || ||||||||||||||||| | |||||| ||||||       |||||||||||||||||||||||  |  |||||||||||||| ||||    
T  18679880 tgaggaaggtgattgcatagccatgaaaatagagagaaactggatg-aaaaaagagtttgagaatgcagaatatga--gtttaagtttttgtggtatgtg 18679976  T

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Target: chr4; HSP #4
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 2 - 201
Target Start/End: Original strand, 18731717 - 18731913
Alignment:
Q  2 taagagccttgtagagattgcccgtaaaaccgtaccgagtgtcagtgcccctaaaactgaggaacacttggtaagtgaatccataagaaaatgaagagga 101  Q
    |||||||  ||||||||| ||| ||||||||||  ||||||||| ||||||| || ||||||||||||||||||||||||| ||| ||||||||||||||    
T  18731717 taagagctctgtagagatggccagtaaaaccgtcacgagtgtcactgcccctgaagctgaggaacacttggtaagtgaatcgataggaaaatgaagagga 18731816  T
Q  102 tgaggaaggagactgcatagccatgaaaattgtgagaaattggatgnnnnnnngagtttgagaatgcagaatatgaatgagtaagtttttgtggtctgtg 201  Q
    ||||||||| || ||||||||||||||||| | |||||| ||||||       |||||||||||||||||||||||  |  |||||||||||||| ||||    
T  18731817 tgaggaaggtgattgcatagccatgaaaatcgagagaaactggatg-aaaaaagagtttgagaatgcagaatatga--gtttaagtttttgtggtatgtg 18731913  T

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Target: chr4; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 2 - 133
Target Start/End: Original strand, 18724298 - 18724429
Alignment:
Q  2 taagagccttgtagagattgcccgtaaaaccgtaccgagtgtcagtgcccctaaaactgaggaacacttggtaagtgaatccataagaaaatgaagagga 101  Q
    ||||||||||||||||||  || ||||||||||  ||||||||| ||||||| || ||||||||||||||||||||||||| ||| ||||||||||||||    
T  18724298 taagagccttgtagagatgaccagtaaaaccgttacgagtgtcactgcccctgaagctgaggaacacttggtaagtgaatcgataggaaaatgaagagga 18724397  T
Q  102 tgaggaaggagactgcatagccatgaaaattg 133  Q
    ||||||||| || ||||||||||||| |||||    
T  18724398 tgaggaaggtgattgcatagccatgagaattg 18724429  T

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Target: chr4; HSP #6
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 17989262 - 17989454
Alignment:
Q  1 ataagagccttgtagagattgcccgtaaaaccgtaccgagtgtcagtgcccctaaaactgaggaacacttggtaagtgaatccataagaaaatgaagagg 100  Q
    |||||||||||  |||||||||| || ||||||||||||||||| |||||| || || |||||||||| | |||| ||||| |||| |||||||||||||    
T  17989262 ataagagccttcaagagattgccggtgaaaccgtaccgagtgtcggtgcccttacaaatgaggaacacatcgtaactgaatgcataggaaaatgaagagg 17989361  T
Q  101 atgaggaaggagactgcatagccatgaaaattgtgagaaattggatgnnnnnnngagtttgagaatgcagaatatgaatgagtaagtttttgtggt 196  Q
    |  || ||||  | ||||| ||||||| ||||| |||||||  ||||       |||||||||||||||||||||||||||| | |||||||||||    
T  17989362 aatagaaaggtaattgcatggccatgagaattgagagaaataagatg---agaagagtttgagaatgcagaatatgaatgaggatgtttttgtggt 17989454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 18073727 - 18073535
Alignment:
Q  1 ataagagccttgtagagattgcccgtaaaaccgtaccgagtgtcagtgcccctaaaactgaggaacacttggtaagtgaatccataagaaaatgaagagg 100  Q
    |||||||||||  |||||||||| || ||||||||||||||||| |||||| || || |||||||||| | |||| ||||| |||| |||||||||||||    
T  18073727 ataagagccttcaagagattgccggtgaaaccgtaccgagtgtcggtgcccttacaaatgaggaacacatcgtaactgaatgcataggaaaatgaagagg 18073628  T
Q  101 atgaggaaggagactgcatagccatgaaaattgtgagaaattggatgnnnnnnngagtttgagaatgcagaatatgaatgagtaagtttttgtggt 196  Q
    |  || ||||  | ||||| ||||||| ||||| |||||||  ||||       |||||||||||||||||||||||||||| | |||||||||||    
T  18073627 aatagaaaggtaattgcatggccatgagaattgagagaaataagatg---agaagagtttgagaatgcagaatatgaatgaggatgtttttgtggt 18073535  T

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Target: scaffold0003 (Bit Score: 66; Significance: 2e-29; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 59535 - 59343
Alignment:
Q  1 ataagagccttgtagagattgcccgtaaaaccgtaccgagtgtcagtgcccctaaaactgaggaacacttggtaagtgaatccataagaaaatgaagagg 100  Q
    |||||||||||  |||||||||| || ||||||||||||||||| |||||| || || |||||||||| | |||| ||||| |||| |||||||||||||    
T  59535 ataagagccttcaagagattgccggtgaaaccgtaccgagtgtcggtgcccttacaaatgaggaacacatcgtaactgaatgcataggaaaatgaagagg 59436  T
Q  101 atgaggaaggagactgcatagccatgaaaattgtgagaaattggatgnnnnnnngagtttgagaatgcagaatatgaatgagtaagtttttgtggt 196  Q
    |  || ||||  | ||||| ||||||| ||||| |||||||  ||||       |||||||||||||||||||||||||||| | |||||||||||    
T  59435 aatagaaaggtaattgcatggccatgagaattgagagaaataagatg---agaagagtttgagaatgcagaatatgaatgaggatgtttttgtggt 59343  T

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Target: chr1 (Bit Score: 65; Significance: 9e-29; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 7 - 147
Target Start/End: Original strand, 28164580 - 28164720
Alignment:
Q  7 gccttgtagagattgcccgtaaaaccgtaccgagtgtcagtgcccctaaaactgaggaacacttggtaagtgaatccataagaaaatgaagaggatgagg 106  Q
    ||||| ||||||| ||| || |||||||  ||||||||| |||||||||||||||||||||||||||| ||||||||||| |||| ||||||||| ||||    
T  28164580 gccttatagagatggccagtgaaaccgtcacgagtgtcactgcccctaaaactgaggaacacttggtatgtgaatccataggaaattgaagaggaagagg 28164679  T
Q  107 aaggagactgcatagccatgaaaattgtgagaaattggatg 147  Q
    || | ||  | |||||||||| |||||  ||||||||||||    
T  28164680 aatgcgatcgtatagccatgagaattgacagaaattggatg 28164720  T

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Target: chr1; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 7 - 101
Target Start/End: Original strand, 28127898 - 28127992
Alignment:
Q  7 gccttgtagagattgcccgtaaaaccgtaccgagtgtcagtgcccctaaaactgaggaacacttggtaagtgaatccataagaaaatgaagagga 101  Q
    ||||||||||||| ||| || |||||||  ||||||||| ||||||| || ||||||||||||||||| ||||||||||| |||| |||||||||    
T  28127898 gccttgtagagatggccagtgaaaccgtcacgagtgtcactgcccctgaagctgaggaacacttggtatgtgaatccataggaaattgaagagga 28127992  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 127
Target Start/End: Original strand, 268570 - 268695
Alignment:
Q  2 taagagccttgtagagattgcccgtaaaaccgtaccgagtgtcagtgcccctaaaactgaggaacacttggtaagtgaatccataagaaaatgaagagga 101  Q
    |||||||||||||||||| |||  ||||||| |  |||||||||  ||| || ||  ||||||| || ||||| |  |||||||| || | |||||||||    
T  268570 taagagccttgtagagatggccaataaaaccctcacgagtgtcaccgcctctgaagttgaggaagacctggtaggcaaatccatatgagattgaagagga 268669  T
Q  102 tgaggaaggagactgcatagccatga 127  Q
     |||||||| || |||||||||||||    
T  268670 agaggaaggtgattgcatagccatga 268695  T

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Target: chr8 (Bit Score: 50; Significance: 8e-20; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 2 - 127
Target Start/End: Original strand, 29273996 - 29274121
Alignment:
Q  2 taagagccttgtagagattgcccgtaaaaccgtaccgagtgtcagtgcccctaaaactgaggaacacttggtaagtgaatccataagaaaatgaagagga 101  Q
    |||||| ||||||||||| |||  |||||||||  |||||||||  ||| |||||  ||||||| || ||||||||||||||||| || | |||||||||    
T  29273996 taagagtcttgtagagatggccaataaaaccgtcacgagtgtcaccgcctctaaagttgaggaagacctggtaagtgaatccatatgagattgaagagga 29274095  T
Q  102 tgaggaaggagactgcatagccatga 127  Q
     |||||||| || |||||||||||||    
T  29274096 agaggaaggtgattgcatagccatga 29274121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 87
Target Start/End: Complemental strand, 31903811 - 31903727
Alignment:
Q  3 aagagccttgtagagattgcccgtaaaaccgtaccgagtgtcagtgcccctaaaactgaggaacacttggtaagtgaatccataa 87  Q
    |||||| ||||||||||| || |||||||| || ||||||||   ||| ||||| ||||||||||| | ||| ||||||||||||    
T  31903811 aagagctttgtagagatttccagtaaaaccatagcgagtgtctaagcctctaaagctgaggaacacatcgtaggtgaatccataa 31903727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 101
Target Start/End: Complemental strand, 116749 - 116658
Alignment:
Q  10 ttgtagagattgcccgtaaaaccgtaccgagtgtcagtgcccctaaaactgaggaacacttggtaagtgaatccataagaaaatgaagagga 101  Q
    ||||||||||| || |||||||| || ||||||||| | || |||||||| |||||||| |  || ||||||||||| ||||| ||||||||    
T  116749 ttgtagagatttccagtaaaaccataacgagtgtcactacctctaaaactaaggaacacgtcataggtgaatccataggaaaaggaagagga 116658  T

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Target: scaffold0038; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 98
Target Start/End: Complemental strand, 27400 - 27313
Alignment:
Q  11 tgtagagattgcccgtaaaaccgtaccgagtgtcagtgcccctaaaactgaggaacacttggtaagtgaatccataagaaaatgaaga 98  Q
    |||||||||| || |||||||| || ||||||||| | || |||||||| |||||||| |  || |||||||||||||| || |||||    
T  27400 tgtagagatttccagtaaaaccataacgagtgtcaatacctctaaaactaaggaacacgtcataggtgaatccataagagaaggaaga 27313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 89
Target Start/End: Complemental strand, 3279638 - 3279562
Alignment:
Q  13 tagagattgcccgtaaaaccgtaccgagtgtcagtgcccctaaaactgaggaacacttggtaagtgaatccataaga 89  Q
    |||||||| || |||||||| || ||||||||||||||||||||||| | ||| || |  || ||||||||||||||    
T  3279638 tagagatttccagtaaaaccatagcgagtgtcagtgcccctaaaactcaagaatacgtcataggtgaatccataaga 3279562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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