View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16611_low_32 (Length: 211)
Name: NF16611_low_32
Description: NF16611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16611_low_32 |
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| [»] scaffold0267 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 192; Significance: 1e-104; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 4131231 - 4131036
Alignment:
| Q |
1 |
atcagttacattttgaagttgtgagatggtaaggttttcccgtagatgggaatgttttcccaagtctgaaatcttcaatccatcgtcctgaatacctaca |
100 |
Q |
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| T |
4131231 |
atcagttacattttgaagttgtgagatggtaaggttttcccgtagatgggaatgttttcccaaatctgaaatcttcaatccatcgtcctgaatacctaca |
4131132 |
T |
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| Q |
101 |
acaaagtccgacaaagtttggagattttctagtctggatatttgcacaggcatttccttcaatcgagtgcctctgatatcaaggtgacgtagattc |
196 |
Q |
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| T |
4131131 |
acaaagtccgacaaagtttggagattttctagtctggatatttgcacaggcatttccttcaatcgagtgcctctgatatcaaggtgacgtagattc |
4131036 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 193
Target Start/End: Original strand, 4091108 - 4091300
Alignment:
| Q |
1 |
atcagttacattttgaagttgtgagatggtaaggttttcccgtagatgggaatgttttcccaagtctgaaatcttcaatccatcgtcctgaatacctaca |
100 |
Q |
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|||||||||||||||||| |||||||||| ||| || || ||| |||| ||| ||||||||| |||| ||||||||||||| ||| || ||| ||| |
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| T |
4091108 |
atcagttacattttgaagctgtgagatggaaagtcttccctgtaaatggaaatattttcccaaatctgcaatcttcaatccaatgtcttgtttactaaca |
4091207 |
T |
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| Q |
101 |
acaaagtccgacaaagtttggagattttctagtctggatatttgcacaggcatttccttcaatcgagtgcctctgatatcaaggtgacgtaga |
193 |
Q |
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|||||| ||||| |||||||||||||||||| |||| | ||| || ||||||||||||||| ||||||||||||| |||||||| |||||| |
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| T |
4091208 |
acaaagctcgacagggtttggagattttctagtttggagagttgtacgggcatttccttcaattgagtgcctctgatgtcaaggtggcgtaga |
4091300 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 2 - 196
Target Start/End: Original strand, 4078981 - 4079175
Alignment:
| Q |
2 |
tcagttacattttgaagttgtgagatggtaaggttttcccgtagatgggaatgttttcccaagtctgaaatcttcaatccatcgtcctgaatacctacaa |
101 |
Q |
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| T |
4078981 |
tcagttaaattttgaagctttgagatgcaaaggcttccctgtagatgggaatattttccaatatctgcaatcttcaacccgacgtcctcagagctgacaa |
4079080 |
T |
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| Q |
102 |
caaagtccgacaaagtttggagattttctagtctggatatttgcacaggcatttccttcaatcgagtgcctctgatatcaaggtgacgtagattc |
196 |
Q |
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| T |
4079081 |
caaagtccgacaaggtttgtagattttctagtttggatacttgcacaggaatttcattcaatcgagtgcctctgatgtcaaggtgccgtaaattc |
4079175 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 2 - 196
Target Start/End: Original strand, 4059372 - 4059566
Alignment:
| Q |
2 |
tcagttacattttgaagttgtgagatggtaaggttttcccgtagatgggaatgttttcccaagtctgaaatcttcaatccatcgtcctgaatacctacaa |
101 |
Q |
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| T |
4059372 |
tcagttaaattttgaagctttgagatgcaaaggcttccctgtagatgggaatattttccaatatctgcaatcttcaacccgacgtcctcagagctgacaa |
4059471 |
T |
|
| Q |
102 |
caaagtccgacaaagtttggagattttctagtctggatatttgcacaggcatttccttcaatcgagtgcctctgatatcaaggtgacgtagattc |
196 |
Q |
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||||||||||||| ||||| |||||||||||| |||||| ||||||||| ||||||||||||||||| ||||| | |||||||| ||||||||| |
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| T |
4059472 |
caaagtccgacaaggtttgtagattttctagtttggatacttgcacaggaatttccttcaatcgagtacctctagtgtcaaggtggcgtagattc |
4059566 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 46 - 196
Target Start/End: Original strand, 4113889 - 4114039
Alignment:
| Q |
46 |
atgggaatgttttcccaagtctgaaatcttcaatccatcgtcctgaatacctacaacaaagtccgacaaagtttggagattttctagtctggatatttgc |
145 |
Q |
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| T |
4113889 |
atgggaatattttaccatatctgcaatctccaatccaacgtcatgaacattgacaagaaatcccgacaaggtttggaggttttctagtttggatatttgc |
4113988 |
T |
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| Q |
146 |
acaggcatttccttcaatcgagtgcctctgatatcaaggtgacgtagattc |
196 |
Q |
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||||| |||||||||| ||||||||||||||| |||||||| ||||||||| |
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| T |
4113989 |
acaggaatttccttcagtcgagtgcctctgatgtcaaggtggcgtagattc |
4114039 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 73 - 163
Target Start/End: Original strand, 11490049 - 11490139
Alignment:
| Q |
73 |
cttcaatccatcgtcctgaatacctacaacaaagtccgacaaagtttggagattttctagtctggatatttgcacaggcatttccttcaat |
163 |
Q |
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| T |
11490049 |
cttcaatccatcattctgcttgccgacaacaaagtccgacaaagtatggaaattttctagtttggctatttgtacaggcatctccctcaat |
11490139 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0267 (Bit Score: 50; Significance: 8e-20; HSPs: 1)
Name: scaffold0267
Description:
Target: scaffold0267; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 110 - 195
Target Start/End: Complemental strand, 19864 - 19779
Alignment:
| Q |
110 |
gacaaagtttggagattttctagtctggatatttgcacaggcatttccttcaatcgagtgcctctgatatcaaggtgacgtagatt |
195 |
Q |
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||||||||||| ||||||| |||||||| |||||| || ||||| ||||||||| |||| ||||||||||||||||| |||||||| |
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| T |
19864 |
gacaaagtttgaagattttgtagtctggttatttgtactggcatctccttcaattgagtacctctgatatcaaggtggcgtagatt |
19779 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 2 - 196
Target Start/End: Complemental strand, 13934657 - 13934463
Alignment:
| Q |
2 |
tcagttacattttgaagttgtgagatggtaaggttttcccgtagatgggaatgttttcccaagtctgaaatcttcaatccatcgtcctgaatacctacaa |
101 |
Q |
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| T |
13934657 |
tcagttacattttgaagctttgagatgaaaaggctcccctgtagatgggaatattttcccatatctgcaatcttcaacccgacgtcctcagagttgacaa |
13934558 |
T |
|
| Q |
102 |
caaagtccgacaaagtttggagattttctagtctggatatttgcacaggcatttccttcaatcgagtgcctctgatatcaaggtgacgtagattc |
196 |
Q |
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||||||| ||||| ||||| |||||||||||| | ||||||| |||| ||||| | |||| ||||||||||||| |||||||| |||| |||| |
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| T |
13934557 |
caaagtcagacaaggtttgtagattttctagttttaatatttgtgcaggaatttcatacaatggagtgcctctgatgtcaaggtgccgtaaattc |
13934463 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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