View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16611_low_4 (Length: 598)
Name: NF16611_low_4
Description: NF16611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16611_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 273; Significance: 1e-152; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 224 - 588
Target Start/End: Original strand, 32309554 - 32309918
Alignment:
| Q |
224 |
tatgtttaccgaatcatcttcttgctttcataatggttttgattttcttttctaacaacttgtggtgttgcgaaatcagggctgtgatgcttccttgctg |
323 |
Q |
| |
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||||||||| |||||||||||||||||||||||||||||||||| | ||||||| |||||||||||| ||||||||||| ||||||||||||||||| |
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| T |
32309554 |
tatgtttactaaatcatcttcttgctttcataatggttttgatttgttgttctaactacttgtggtgttacgaaatcagggatgtgatgcttccttgcta |
32309653 |
T |
|
| Q |
324 |
ttggaggacaatggtgatagaaacggttcctaagagaagcaggctattccaaatcaaatgttgaaaagttttgataaagttgacatgattaaggaggagg |
423 |
Q |
| |
|
||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||||| |||||| ||||||| ||||||||| ||||||||||||||| |
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| T |
32309654 |
ttggaagacaatggtgatagaaatggttcctatgagaagcaggctattccaaatcaaacattgaaaggttttgacaaagttgacttgattaaggaggagg |
32309753 |
T |
|
| Q |
424 |
tggaacaagcatgtcccggcgttgtgtcttgtgctgacatactagctctcgctgcaagagattccgttcttttggtttgttcctaacacctataagttta |
523 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32309754 |
tggaacaagcatgtcccggcgttgtgtcttgtgctgatatacttgctcttgccgcaagagattccgttcttttggtttgttcctaacacctataagttta |
32309853 |
T |
|
| Q |
524 |
taacatatatcttctgttgaaagctcttaattcttatgcattttcactttatttatgcacctatg |
588 |
Q |
| |
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|||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| |
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| T |
32309854 |
taacatatatcttctgttgaaatctcttaattctgatgcattttcactttatttatgcacctatg |
32309918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 235 - 588
Target Start/End: Original strand, 32305429 - 32305785
Alignment:
| Q |
235 |
aatcatcttcttgctttcataatggttttgattttcttttctaacaacttgtggtg---ttgcgaaatcagggctgtgatgcttccttgctgttggagga |
331 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| || ||||||| |||||||||| |||| ||||||||| ||||||||||||||||| ||||| || |
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| T |
32305429 |
aatcatcttcttgctttcataatggctttgatttgctgttctaactacttgtggtggtgttgccaaatcagggatgtgatgcttccttgctattggaaga |
32305528 |
T |
|
| Q |
332 |
caatggtgatagaaacggttcctaagagaagcaggctattccaaatcaaatgttgaaaagttttgataaagttgacatgattaaggaggaggtggaacaa |
431 |
Q |
| |
|
| |||||||||||||||||||||| ||||||||||||||||||||||||| |||||| ||||||| ||||||||| |||| |||||||||||||| ||| |
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| T |
32305529 |
ctatggtgatagaaacggttcctatgagaagcaggctattccaaatcaaacattgaaaggttttgacaaagttgacttgatcaaggaggaggtggatcaa |
32305628 |
T |
|
| Q |
432 |
gcatgtcccggcgttgtgtcttgtgctgacatactagctctcgctgcaagagattccgttcttttggtttgttcctaacacctataagtttataacatat |
531 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| ||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
32305629 |
gcatgtcccggcgttgtgtcttgtactgacatacttgctcttgtcacaagagattccgttcttttggtttgttcctaacacctataagtttataacatat |
32305728 |
T |
|
| Q |
532 |
atcttctgttgaaagctcttaattcttatgcattttcactttatttatgcacctatg |
588 |
Q |
| |
|
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
32305729 |
atcttctgttgaaatctcttaattctgatgcattttcactttatttatgcacctatg |
32305785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 224 - 574
Target Start/End: Complemental strand, 32565280 - 32564930
Alignment:
| Q |
224 |
tatgtttaccgaatcatcttcttgctttcataatggttttgattttcttttctaacaacttgtggtgttgcgaaatcagggctgtgatgcttccttgctg |
323 |
Q |
| |
|
||||||||| ||||||||||||| |||||||||||||||||||| || ||||||| |||||||||||| | ||||||||| ||||||||||||||||| |
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|
| T |
32565280 |
tatgtttactaaatcatcttcttgatttcataatggttttgatttgctgttctaactacttgtggtgtttctaaatcagggttgtgatgcttccttgcta |
32565181 |
T |
|
| Q |
324 |
ttggaggacaatggtgatagaaacggttcctaagagaagcaggctattccaaatcaaatgttgaaaagttttgataaagttgacatgattaaggaggagg |
423 |
Q |
| |
|
||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| ||||||| ||||||||| |||| |||||||||| |
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|
| T |
32565180 |
ttggaagacaatggtgatagaaacggttcctatgagaagcaggctattccaaatcaaacattgaaaggttttgacaaagttgacttgatcaaggaggagg |
32565081 |
T |
|
| Q |
424 |
tggaacaagcatgtcccggcgttgtgtcttgtgctgacatactagctctcgctgcaagagattccgttcttttggtttgttcctaacacctataagttta |
523 |
Q |
| |
|
|||||||||||||||||||| ||||||| |||||||||||||| ||||| || ||||||||||||||||||||||| ||||||| |||||||||||||| |
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|
| T |
32565080 |
tggaacaagcatgtcccggcattgtgtcgtgtgctgacatacttgctcttgccgcaagagattccgttcttttggtatgttcctcgcacctataagttta |
32564981 |
T |
|
| Q |
524 |
taacatatatcttctgttgaaagctcttaattcttatgcattttcacttta |
574 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| |||||||||||||||| |
|
|
| T |
32564980 |
taacatatatcttctgttgaatgctcttaattctgatgcattttcacttta |
32564930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 224 - 508
Target Start/End: Complemental strand, 32814903 - 32814619
Alignment:
| Q |
224 |
tatgtttaccgaatcatcttcttgctttcataatggttttgattttcttttctaacaacttgtggtgttgcgaaatcagggctgtgatgcttccttgctg |
323 |
Q |
| |
|
||||||||| ||||||||||||| |||||||||||||||||||| || ||||||| |||||||||||| ||||||||||| ||||||||||||||||| |
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|
| T |
32814903 |
tatgtttactaaatcatcttcttgatttcataatggttttgatttgctgttctaactacttgtggtgttacgaaatcagggatgtgatgcttccttgcta |
32814804 |
T |
|
| Q |
324 |
ttggaggacaatggtgatagaaacggttcctaagagaagcaggctattccaaatcaaatgttgaaaagttttgataaagttgacatgattaaggaggagg |
423 |
Q |
| |
|
||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| ||||||| ||||||||| |||| ||||| |||| |
|
|
| T |
32814803 |
ttggaagacaatggtgatagaaacggttcctatgagaagcaggctattccaaatcaaacattgaaaggttttgacaaagttgacttgatcaaggaagagg |
32814704 |
T |
|
| Q |
424 |
tggaacaagcatgtcccggcgttgtgtcttgtgctgacatactagctctcgctgcaagagattccgttcttttggtttgttccta |
508 |
Q |
| |
|
|||| |||||||||||||||||||| ||||||||||||||||| ||||| || | |||||||||||||||||||||||||||||| |
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|
| T |
32814703 |
tggagcaagcatgtcccggcgttgtttcttgtgctgacatacttgctcttgccgtaagagattccgttcttttggtttgttccta |
32814619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 274 - 511
Target Start/End: Original strand, 28220815 - 28221052
Alignment:
| Q |
274 |
tctaacaacttgtggtgttgcgaaatcagggctgtgatgcttccttgctgttggaggacaatggtgatagaaacggttcctaagagaagcaggctattcc |
373 |
Q |
| |
|
|||||| |||||||||||||| |||||||| ||||||||||||||| |||||||||||||||||||||||||| ||||||| |||||||| |||||||| |
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|
| T |
28220815 |
tctaactacttgtggtgttgctgaatcagggttgtgatgcttccttgttgttggaggacaatggtgatagaaacagttcctatgagaagcaagctattcc |
28220914 |
T |
|
| Q |
374 |
aaatcaaatgttgaaaagttttgataaagttgacatgattaaggaggaggtggaacaagcatgtcccggcgttgtgtcttgtgctgacatactagctctc |
473 |
Q |
| |
|
|||||||| |||||| || ||| ||||||||| |||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||| |
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|
| T |
28220915 |
aaatcaaacattgaaaggtaatgacaaagttgacttgattaaggaggaggtcgaacaagcatgtcccggcgttgtctcttgtgctgacatacttgctctt |
28221014 |
T |
|
| Q |
474 |
gctgcaagagattccgttcttttggtttgttcctaaca |
511 |
Q |
| |
|
|| || |||||||||||| ||||||||||||| ||||| |
|
|
| T |
28221015 |
gcagcgagagattccgtttttttggtttgttcttaaca |
28221052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 339 - 511
Target Start/End: Complemental strand, 28215376 - 28215204
Alignment:
| Q |
339 |
gatagaaacggttcctaagagaagcaggctattccaaatcaaatgttgaaaagttttgataaagttgacatgattaaggaggaggtggaacaagcatgtc |
438 |
Q |
| |
|
||||||||| |||||| ||||||||||||||||||||||||| || ||| ||||||| ||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
28215376 |
gatagaaacatttcctatgagaagcaggctattccaaatcaaacattaaaaggttttgacaaagttgacttgattaaggaggaggtggaacaagcatgtc |
28215277 |
T |
|
| Q |
439 |
ccggcgttgtgtcttgtgctgacatactagctctcgctgcaagagattccgttcttttggtttgttcctaaca |
511 |
Q |
| |
|
|||||||||| ||||||||||||||||| ||||| || || |||||||||||| ||||||||||||| ||||| |
|
|
| T |
28215276 |
ccggcgttgtctcttgtgctgacatacttgctcttgcagcgagagattccgtttttttggtttgttcttaaca |
28215204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 495 - 580
Target Start/End: Complemental strand, 32787451 - 32787366
Alignment:
| Q |
495 |
ttggtttgttcctaacacctataagtttataacatatatcttctgttgaaagctcttaattcttatgcattttcactttatttatg |
580 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
32787451 |
ttggtttgttcctaacacctataagtttataacatatatcttctgttgaaagctcttaattctgatgcattttcactttatttatg |
32787366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 548 - 588
Target Start/End: Complemental strand, 32814610 - 32814570
Alignment:
| Q |
548 |
tcttaattcttatgcattttcactttatttatgcacctatg |
588 |
Q |
| |
|
|||||||| | |||||||||||||||||||||||||||||| |
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|
| T |
32814610 |
tcttaattatgatgcattttcactttatttatgcacctatg |
32814570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 185; Significance: 1e-100; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 75 - 302
Target Start/End: Original strand, 301778 - 302008
Alignment:
| Q |
75 |
tttacaggctctatgaaatagtgaatattgatatcctaaattttacaggctctatatttact---gcatagatctttgtttcataatggtttactttact |
171 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
301778 |
tttataggctctatgaaatagtgaatattgatatcctaaattttacaggctctatatttactactgcatagatctttgtttcataatggtttactttact |
301877 |
T |
|
| Q |
172 |
ttactataattgaagnnnnnnnngtgaaactcttatatatgctatctatgtttatgtttaccgaatcatcttcttgctttcataatggttttgattttct |
271 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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|
| T |
301878 |
ttactataattgaagaaaaaaaagtgaaactcttatatatgctatctatgtttatgtttaccgaatcatcttcttgctttcataatggttttgatttgct |
301977 |
T |
|
| Q |
272 |
tttctaacaacttgtggtgttgcgaaatcag |
302 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
301978 |
tttctaacaacttgtggtgttgcgaaatcag |
302008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 13 - 78
Target Start/End: Original strand, 301670 - 301735
Alignment:
| Q |
13 |
tcagttatgtggtggaaacgaggtgtctttatttttgtgcattttgcatccaagatcataaattta |
78 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
301670 |
tcagttatgtggtggaaacgaggtgtctttatttttgtgcattttgcatccaagattataaattta |
301735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 128 - 172
Target Start/End: Original strand, 300607 - 300651
Alignment:
| Q |
128 |
atatttactgcatagatctttgtttcataatggtttactttactt |
172 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
300607 |
atatttactgcatagatctttgtttcataatggtttactttactt |
300651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 128 - 170
Target Start/End: Complemental strand, 38238904 - 38238862
Alignment:
| Q |
128 |
atatttactgcatagatctttgtttcataatggtttactttac |
170 |
Q |
| |
|
|||||||||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
38238904 |
atatttactgtatagacctttgtttcataatggtttactttac |
38238862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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