View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16611_low_5 (Length: 564)

Name: NF16611_low_5
Description: NF16611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16611_low_5
NF16611_low_5
[»] chr7 (2 HSPs)
chr7 (20-559)||(38632163-38632701)
chr7 (25-276)||(38634904-38635170)
[»] chr1 (20 HSPs)
chr1 (25-165)||(35295600-35295740)
chr1 (25-165)||(35190653-35190793)
chr1 (35-164)||(45525788-45525917)
chr1 (35-165)||(35219391-35219521)
chr1 (40-174)||(35225239-35225373)
chr1 (35-174)||(8639228-8639367)
chr1 (38-165)||(35200235-35200362)
chr1 (34-164)||(35205244-35205373)
chr1 (38-164)||(35476641-35476767)
chr1 (36-164)||(45531899-45532027)
chr1 (34-152)||(34309696-34309814)
chr1 (25-92)||(35216241-35216308)
chr1 (35-109)||(35248588-35248662)
chr1 (25-93)||(35212277-35212345)
chr1 (33-165)||(35270734-35270866)
chr1 (37-159)||(35147651-35147773)
chr1 (45-91)||(35252398-35252444)
chr1 (134-165)||(35208528-35208559)
chr1 (34-165)||(35474218-35474347)
chr1 (49-158)||(19267480-19267591)
[»] chr3 (4 HSPs)
chr3 (35-160)||(899427-899552)
chr3 (34-160)||(19246719-19246845)
chr3 (49-160)||(23332100-23332211)
chr3 (45-122)||(53924083-53924160)


Alignment Details
Target: chr7 (Bit Score: 504; Significance: 0; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 504; E-Value: 0
Query Start/End: Original strand, 20 - 559
Target Start/End: Original strand, 38632163 - 38632701
Alignment:
Q  20 tctccaatccttgagcatcaatcaacttgaacacaagataagctacatactgagtatttcgagacaaggcaagagtgtctatccttccacgaatttcaag 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38632163 tctccaatccttgagcatcaatcaacttgaacacaagataagctacatactgagtatttcgagacaaggcaagagtgtctatccttccacgaatttcaag 38632262  T
Q  120 caaaaacacatcacgaagctcagcaacttcagggaacctgtccaaattttttgcaagataaaaatacaggaacttagcaaaaagttgaaagtaattcata 219  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  38632263 cgaaaacacatcacgaagctcagcaacttcagggaacctgtccaaattttttgcaagataaaaatacaggaacttagcaaaaagttaaaagtaattcata 38632362  T
Q  220 agatcacaaatggatagtatttatacatgtgtgcttagtagttaaagccattgattggaaaatcattgatagagactccgctcataatcattaatgcatg 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38632363 agatcacaaatggatagtatttatacatgtgtgcttagtagttaaagccattgattggaaaatcattgatagagactccgctcataatcattaatgcatg 38632462  T
Q  320 cacaattaattataacaaactatgtctatgaagtaatttaaatctttacttcgatttttcaatcaataacttggaaatgcaaggtaaggctgcctatttg 419  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  38632463 cacaattaattataacaaactatgtctatgaagtaatttaaatctttacttcgatttttcaatcaataacttgaaaatgcaaggtaaggctgcctatttg 38632562  T
Q  420 agccttctttgcaagatcgaaacagatgtatccagtactctctcttgaatctttcatacattttgttgaaaaatatgatagcaaaagtcagttattttat 519  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  38632563 agccttctttgcacgatcgaaacagatgtatccagtactctctcttgaatctttcataca-tttgttgaaaaatatgatagcaaaagtcagttattttat 38632661  T
Q  520 cagacgagggaacagcatattcagcctttgcttctcctct 559  Q
    ||||||||| |||||||||||||||||||| || ||||||    
T  38632662 cagacgaggaaacagcatattcagcctttgtttttcctct 38632701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 25 - 276
Target Start/End: Original strand, 38634904 - 38635170
Alignment:
Q  25 aatccttgagcatcaatcaacttgaacacaagataagctacatactgagtatttcgagacaaggcaagagtgtctatccttccacgaatttcaagcaaaa 124  Q
    |||| |||||||||||||| || ||||||||||||||||||||||||||||||||| ||||||  |||||||| ||| |||||||||||||||||| |||    
T  38634904 aatcgttgagcatcaatcatctggaacacaagataagctacatactgagtatttcgggacaagtaaagagtgtttattcttccacgaatttcaagcgaaa 38635003  T
Q  125 acacatcacgaagctcagcaacttcagggaacctgtccaaatttt-----------ttgcaa------gataaaaatacaggaacttagcaaaaagttga 207  Q
    || ||| ||||| |||| ||||||||||||||||||||||| |||           ||||||      ||||  | |||| ||||| || ||||||||||    
T  38635004 acgcattacgaatctcaacaacttcagggaacctgtccaaaatttgtgcacaaaagttgcaatgatatgatatgattacaagaactgagaaaaaagttga 38635103  T
Q  208 aagtaattcataagatcacaaatggatagtatttatacatgtgtgcttagtagttaaagccattgattg 276  Q
    |||||||||||| ||||||||||||  ||| ||||||||||||| || |||||||||||||||| ||||    
T  38635104 aagtaattcataggatcacaaatgg--agtgtttatacatgtgtactgagtagttaaagccattaattg 38635170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 69; Significance: 1e-30; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 25 - 165
Target Start/End: Complemental strand, 35295740 - 35295600
Alignment:
Q  25 aatccttgagcatcaatcaacttgaacacaagataagctacatactgagtatttcgagacaaggcaagagtgtctatccttccacgaatttcaagcaaaa 124  Q
    |||||| | |||| ||||| ||||||||||||||||||| |||| ||||||||| | ||||||||| | |||| |||| | ||||||||||||||| | |    
T  35295740 aatcctcgggcattaatcatcttgaacacaagataagctgcatattgagtatttggggacaaggcaggggtgtttatcatcccacgaatttcaagccata 35295641  T
Q  125 acacatcacgaagctcagcaacttcagggaacctgtccaaa 165  Q
     |||| ||||||||||||||||||| |||||||||||||||    
T  35295640 gcacagcacgaagctcagcaacttcggggaacctgtccaaa 35295600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 25 - 165
Target Start/End: Original strand, 35190653 - 35190793
Alignment:
Q  25 aatccttgagcatcaatcaacttgaacacaagataagctacatactgagtatttcgagacaaggcaagagtgtctatccttccacgaatttcaagcaaaa 124  Q
    |||||||  |||||||||| ||||||||||||||||||  ||||||| |||||| | ||||||||||| || | |||| | |||||||| |||||| |      
T  35190653 aatccttcggcatcaatcatcttgaacacaagataagccgcatactgggtatttggggacaaggcaagggtatttatcatcccacgaatatcaagccacc 35190752  T
Q  125 acacatcacgaagctcagcaacttcagggaacctgtccaaa 165  Q
    |||| ||| ||||||||||||||||||||||||||||||||    
T  35190753 acacttcaagaagctcagcaacttcagggaacctgtccaaa 35190793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 35 - 164
Target Start/End: Original strand, 45525788 - 45525917
Alignment:
Q  35 catcaatcaacttgaacacaagataagctacatactgagtatttcgagacaaggcaagagtgtctatccttccacgaatttcaagcaaaaacacatcacg 134  Q
    |||||||||| |||||||| ||||||||| |||||||||||||| |||||||||||||| |||  ||| | ||||||||||| ||| |  |||||  |||    
T  45525788 catcaatcaatttgaacacgagataagctgcatactgagtatttggagacaaggcaagattgttaatcatcccacgaatttcgagccaccacacaagacg 45525887  T
Q  135 aagctcagcaacttcagggaacctgtccaa 164  Q
    ||| | ||||||||| ||||||||||||||    
T  45525888 aagattagcaacttcggggaacctgtccaa 45525917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 35 - 165
Target Start/End: Original strand, 35219391 - 35219521
Alignment:
Q  35 catcaatcaacttgaacacaagataagctacatactgagtatttcgagacaaggcaagagtgtctatccttccacgaatttcaagcaaaaacacatcacg 134  Q
    ||||||||| ||||||||||||||||| | ||||| |||||||| ||||||||| ||| |||| |||| | |||| ||||||||||  | |||  | | |    
T  35219391 catcaatcatcttgaacacaagataagttgcatacagagtatttggagacaaggtaagggtgtttatcttgccacaaatttcaagccgacacatgttaag 35219490  T
Q  135 aagctcagcaacttcagggaacctgtccaaa 165  Q
    ||||||| |||||||||||||||||||||||    
T  35219491 aagctcaacaacttcagggaacctgtccaaa 35219521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 40 - 174
Target Start/End: Original strand, 35225239 - 35225373
Alignment:
Q  40 atcaacttgaacacaagataagctacatactgagtatttcgagacaaggcaagagtgtctatccttccacgaatttcaagcaaaaacacatcacgaagct 139  Q
    |||| ||||||||||||||||| ||||||| |||||||| | ||||||||||| |||| || | | ||||||||||||||| || |||||| | |||| |    
T  35225239 atcatcttgaacacaagataagttacataccgagtatttggggacaaggcaagggtgtttaacttcccacgaatttcaagccaacacacatgaagaagtt 35225338  T
Q  140 cagcaacttcagggaacctgtccaaattttttgca 174  Q
    | ||||||||||| || ||||||||| ||| ||||    
T  35225339 cggcaacttcaggaaatctgtccaaaatttgtgca 35225373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 35 - 174
Target Start/End: Original strand, 8639228 - 8639367
Alignment:
Q  35 catcaatcaacttgaacacaagataagctacatactgagtatttcgagacaaggcaagagtgtctatccttccacgaatttcaagcaaaaacacatcacg 134  Q
    ||||||||| ||||||||||||||||| | ||||   ||||||  | ||||||||| | |||| |||| |||||||||||| ||||  | |||||| | |    
T  8639228 catcaatcatcttgaacacaagataagttgcatatgtagtattcggggacaaggcacgggtgtttatctttccacgaattttaagccgacacacattaag 8639327  T
Q  135 aagctcagcaacttcagggaacctgtccaaattttttgca 174  Q
    || |||| ||||||||||||||||||||||| ||| ||||    
T  8639328 aatctcaacaacttcagggaacctgtccaaaatttgtgca 8639367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 38 - 165
Target Start/End: Original strand, 35200235 - 35200362
Alignment:
Q  38 caatcaacttgaacacaagataagctacatactgagtatttcgagacaaggcaagagtgtctatccttccacgaatttcaagcaaaaacacatcacgaag 137  Q
    |||||| ||||||||||||||||||| |||||||||||||| | ||||| |||||  ||| |||| | |||| ||| | |||| || | ||| || ||||    
T  35200235 caatcatcttgaacacaagataagctgcatactgagtatttggggacaatgcaagcatgtttatcatcccactaatatgaagccaacaaacaacaagaag 35200334  T
Q  138 ctcagcaacttcagggaacctgtccaaa 165  Q
    |||||| |||||||||||||| ||||||    
T  35200335 ctcagcgacttcagggaacctatccaaa 35200362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 34 - 164
Target Start/End: Original strand, 35205244 - 35205373
Alignment:
Q  34 gcatcaatcaacttgaacacaagataagctacatactgagtatttcgagacaaggcaagagtgtctatccttccacgaatttcaagcaaaaacacatcac 133  Q
    |||||||||| ||||||||||||||||||| |||| ||||||||| ||||||| |||||| |||  ||| | ||||||||||| ||| |  |||||| ||    
T  35205244 gcatcaatcatcttgaacacaagataagctgcatattgagtatttggagacaatgcaagattgttaatcatcccacgaatttcgagccaccacacatgac 35205343  T
Q  134 gaagctcagcaacttcagggaacctgtccaa 164  Q
    |||| | |||||| || |||| |||||||||    
T  35205344 gaagataagcaac-tcggggagcctgtccaa 35205373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 38 - 164
Target Start/End: Original strand, 35476641 - 35476767
Alignment:
Q  38 caatcaacttgaacacaagataagctacatactgagtatttcgagacaaggcaagagtgtctatccttccacgaatttcaagcaaaaacacatcacgaag 137  Q
    |||||| ||||||||||||||||||  |||||||||||||| | |||||||||   |||| |||| ||||| ||||||||||| ||  ||||| | ||||    
T  35476641 caatcatcttgaacacaagataagccgcatactgagtatttggggacaaggcattggtgtttatctttccatgaatttcaagccaacgcacatgaagaag 35476740  T
Q  138 ctcagcaacttcagggaacctgtccaa 164  Q
    || ||||||||  |||||||| |||||    
T  35476741 cttagcaactttggggaacctatccaa 35476767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 36 - 164
Target Start/End: Original strand, 45531899 - 45532027
Alignment:
Q  36 atcaatcaacttgaacacaagataagctacatactgagtatttcgagacaaggcaagagtgtctatccttccacgaatttcaagcaaaaacacatcacga 135  Q
    ||||||||  |||||||||||||||||| |||| ||||||||| | |||||||||||| |||  ||| | ||||||||||| ||| |  |||||  || |    
T  45531899 atcaatcattttgaacacaagataagctgcatattgagtatttggggacaaggcaagattgttaatcatcccacgaatttcgagccaccacacaagacaa 45531998  T
Q  136 agctcagcaacttcagggaacctgtccaa 164  Q
    || | ||||||||| ||||||||||||||    
T  45531999 agtttagcaacttcggggaacctgtccaa 45532027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 34 - 152
Target Start/End: Original strand, 34309696 - 34309814
Alignment:
Q  34 gcatcaatcaacttgaacacaagataagctacatactgagtatttcgagacaaggcaagagtgtctatccttccacgaatttcaagcaaaaacacatcac 133  Q
    |||| ||||| ||||||||| ||||||||  |||||||||||||| | ||||||| ||||||||  ||| | ||||||||||||||| |  |||||  ||    
T  34309696 gcattaatcatcttgaacacgagataagccgcatactgagtatttggggacaaggaaagagtgttaatcatcccacgaatttcaagcgagtacacaagac 34309795  T
Q  134 gaagctcagcaacttcagg 152  Q
     ||||| ||||||||||||    
T  34309796 aaagcttagcaacttcagg 34309814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 25 - 92
Target Start/End: Original strand, 35216241 - 35216308
Alignment:
Q  25 aatccttgagcatcaatcaacttgaacacaagataagctacatactgagtatttcgagacaaggcaag 92  Q
    |||||||  |||||||||| ||| ||||||||||||| | |||||||||||||| |||||||||||||    
T  35216241 aatccttcggcatcaatcatcttaaacacaagataagttgcatactgagtatttggagacaaggcaag 35216308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 35 - 109
Target Start/End: Original strand, 35248588 - 35248662
Alignment:
Q  35 catcaatcaacttgaacacaagataagctacatactgagtatttcgagacaaggcaagagtgtctatccttccac 109  Q
    ||||||||| ||||||||||||||||||| |||||||||||||| | |||||| |||  |||| |||||| ||||    
T  35248588 catcaatcaccttgaacacaagataagctgcatactgagtatttggggacaagtcaatggtgtttatcctaccac 35248662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 25 - 93
Target Start/End: Original strand, 35212277 - 35212345
Alignment:
Q  25 aatccttgagcatcaatcaacttgaacacaagataagctacatactgagtatttcgagacaaggcaaga 93  Q
    ||||| || |||||||||| ||||||||||||||||||  ||||  |||||||| ||||||||||||||    
T  35212277 aatccatgggcatcaatcatcttgaacacaagataagccgcatagcgagtatttggagacaaggcaaga 35212345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 33 - 165
Target Start/End: Original strand, 35270734 - 35270866
Alignment:
Q  33 agcatcaatcaacttgaacacaagataagctacatactgagtatttcgagacaaggcaagagtgtctatccttccacgaatttcaagcaaaaacacatca 132  Q
    ||||| |||||  |||||||||| ||||||| |||| ||||||||| | |||| | | |  |||| ||||   ||| ||||||||||| || ||||||||    
T  35270734 agcattaatcattttgaacacaacataagctgcatattgagtatttggggacaggacgatggtgtttatcacaccatgaatttcaagccaacacacatca 35270833  T
Q  133 cgaagctcagcaacttcagggaacctgtccaaa 165  Q
      ||||| ||| |||||||||||||||||||||    
T  35270834 acaagcttagcgacttcagggaacctgtccaaa 35270866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 37 - 159
Target Start/End: Original strand, 35147651 - 35147773
Alignment:
Q  37 tcaatcaacttgaacacaagataagctacatactgagtatttcgagacaaggcaagagtgtctatccttccacgaatttcaagcaaaaacacatcacgaa 136  Q
    ||||||| ||||||||||||||||||  ||||||| |||||| | ||||||  ||| |||| |||| | |||| ||| |||||| |  |||| | | |||    
T  35147651 tcaatcatcttgaacacaagataagccgcatactgggtatttggggacaagctaagggtgtttatcgtcccactaatatcaagccaccacactttaagaa 35147750  T
Q  137 gctcagcaacttcagggaacctg 159  Q
    | | |||||||||||||||||||    
T  35147751 gttgagcaacttcagggaacctg 35147773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 45 - 91
Target Start/End: Original strand, 35252398 - 35252444
Alignment:
Q  45 cttgaacacaagataagctacatactgagtatttcgagacaaggcaa 91  Q
    ||||||||||||||| |||||||||||||||||| | ||||||||||    
T  35252398 cttgaacacaagatacgctacatactgagtatttggggacaaggcaa 35252444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 134 - 165
Target Start/End: Original strand, 35208528 - 35208559
Alignment:
Q  134 gaagctcagcaacttcagggaacctgtccaaa 165  Q
    ||||||||||||||||||||||||||||||||    
T  35208528 gaagctcagcaacttcagggaacctgtccaaa 35208559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 34 - 165
Target Start/End: Original strand, 35474218 - 35474347
Alignment:
Q  34 gcatcaatcaacttgaacacaagataagctacatactgagtatttcgagacaaggcaagagtgtctatccttccacgaatttcaagcaaaaacacatcac 133  Q
    |||| ||||| ||||||||||||||||| | ||||  | |||| | | ||||||||||| |||| |||| | |||||||| ||||||  || ||||| |     
T  35474218 gcattaatcatcttgaacacaagataagttccatatagtgtatgtggggacaaggcaagggtgtttatcttcccacgaatctcaagc-caaccacattaa 35474316  T
Q  134 gaagctcagcaacttcagggaacctgtccaaa 165  Q
    |||||||| ||| ||||||| |||||||||||    
T  35474317 gaagctcaacaaattcaggg-acctgtccaaa 35474347  T

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Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 49 - 158
Target Start/End: Complemental strand, 19267591 - 19267480
Alignment:
Q  49 aacacaagataagcta--catactgagtatttcgagacaaggcaagagtgtctatccttccacgaatttcaagcaaaaacacatcacgaagctcagcaac 146  Q
    |||||||||||||||   ||||| ||||| || | |||||||  || |||| ||||||||||||||||||| |  || |||||| | ||| |||| |||     
T  19267591 aacacaagataagctctgcatacagagtaatttgggacaaggtgagggtgtttatccttccacgaatttcatgtgaatacacatgaagaatctcaacaat 19267492  T
Q  147 ttcagggaacct 158  Q
    ||||||||||||    
T  19267491 ttcagggaacct 19267480  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 35 - 160
Target Start/End: Complemental strand, 899552 - 899427
Alignment:
Q  35 catcaatcaacttgaacacaagataagctacatactgagtatttcgagacaaggcaagagtgtctatccttccacgaatttcaagcaaaaacacatcacg 134  Q
    ||||||||| ||||||||||||||||||  |||||  ||||||| | ||||||| || |||||  ||  ||||||||||||||||| | ||||||  ||     
T  899552 catcaatcatcttgaacacaagataagccgcataccaagtattttgggacaaggaaaaagtgttaattattccacgaatttcaagcgagaacacaagaca 899453  T
Q  135 aagctcagcaacttcagggaacctgt 160  Q
    ||||| | | |||||||| |||||||    
T  899452 aagcttaacgacttcaggaaacctgt 899427  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 34 - 160
Target Start/End: Complemental strand, 19246845 - 19246719
Alignment:
Q  34 gcatcaatcaacttgaacacaagataagctacatactgagtatttcgagacaaggcaagagtgtctatccttccacgaatttcaagcaaaaacacatcac 133  Q
    |||||||| | |||||| || ||||||||| |||||||||||||| | ||||||| |||||| |  ||  | |||||||||||| || | ||||||  ||    
T  19246845 gcatcaattatcttgaagacgagataagctgcatactgagtatttggggacaaggaaagagtcttaataataccacgaatttcatgcgagaacacaagac 19246746  T
Q  134 gaagctcagcaacttcagggaacctgt 160  Q
      |||| ||||||||| ||||||||||    
T  19246745 tgagcttagcaacttccgggaacctgt 19246719  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 49 - 160
Target Start/End: Original strand, 23332100 - 23332211
Alignment:
Q  49 aacacaagataagctacatactgagtatttcgagacaaggcaagagtgtctatccttccacgaatttcaagcaaaaacacatcacgaagctcagcaactt 148  Q
    ||||| || |||||| |||||||||||||| | ||||| | ||||||||  ||  | |||| ||||||| || | |||| |  |||||||| ||||||||    
T  23332100 aacacgaggtaagctgcatactgagtatttggggacaatgaaagagtgttaataatcccacaaatttcatgcgagaacaaaagacgaagcttagcaactt 23332199  T
Q  149 cagggaacctgt 160  Q
    ||||||||||||    
T  23332200 cagggaacctgt 23332211  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 45 - 122
Target Start/End: Complemental strand, 53924160 - 53924083
Alignment:
Q  45 cttgaacacaagataagctacatactgagtatttcgagacaaggcaagagtgtctatccttccacgaatttcaagcaa 122  Q
    ||||||||||||||||||  ||||| |||||||| | |||||| |||| |||| |||| ||||  ||| |||||||||    
T  53924160 cttgaacacaagataagccgcataccgagtatttggggacaagacaagggtgtttatcattccttgaaattcaagcaa 53924083  T

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