View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16611_low_7 (Length: 509)

Name: NF16611_low_7
Description: NF16611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16611_low_7
NF16611_low_7
[»] chr4 (15 HSPs)
chr4 (17-494)||(33997838-33998316)
chr4 (378-481)||(8747691-8747794)
chr4 (378-436)||(8749046-8749104)
chr4 (378-482)||(8896906-8897011)
chr4 (376-436)||(48157678-48157738)
chr4 (378-434)||(40168639-40168695)
chr4 (371-434)||(9397437-9397500)
chr4 (379-434)||(40169781-40169836)
chr4 (378-434)||(1961172-1961228)
chr4 (377-433)||(9178634-9178690)
chr4 (374-434)||(25011731-25011791)
chr4 (378-434)||(31435854-31435909)
chr4 (457-493)||(31599869-31599905)
chr4 (378-434)||(55780387-55780443)
chr4 (378-434)||(55844567-55844623)
[»] chr2 (11 HSPs)
chr2 (376-482)||(27553761-27553867)
chr2 (378-482)||(27552452-27552556)
chr2 (378-494)||(12812836-12812953)
chr2 (378-481)||(10851913-10852015)
chr2 (376-434)||(28851674-28851732)
chr2 (377-425)||(24192244-24192291)
chr2 (378-434)||(45413479-45413535)
chr2 (449-480)||(28617993-28618024)
chr2 (378-481)||(45412335-45412438)
chr2 (376-434)||(1389231-1389289)
chr2 (460-493)||(1093131-1093164)
[»] chr1 (13 HSPs)
chr1 (376-494)||(46525784-46525902)
chr1 (115-228)||(6230075-6230188)
chr1 (380-494)||(46524542-46524656)
chr1 (378-481)||(46312065-46312169)
chr1 (378-481)||(3000168-3000271)
chr1 (378-482)||(14204837-14204942)
chr1 (376-481)||(2999489-2999593)
chr1 (378-425)||(14512669-14512716)
chr1 (378-436)||(50379972-50380030)
chr1 (373-434)||(43706901-43706962)
chr1 (378-434)||(2425471-2425527)
chr1 (378-434)||(28920899-28920955)
chr1 (378-434)||(46313276-46313332)
[»] chr6 (8 HSPs)
chr6 (376-494)||(22417656-22417774)
chr6 (373-487)||(22418886-22419000)
chr6 (370-434)||(6978139-6978203)
chr6 (378-434)||(20409067-20409123)
chr6 (378-433)||(12181595-12181650)
chr6 (376-426)||(10120173-10120223)
chr6 (397-434)||(15888990-15889027)
chr6 (378-434)||(20410219-20410275)
[»] chr3 (12 HSPs)
chr3 (376-482)||(10584036-10584142)
chr3 (376-481)||(32829738-32829843)
chr3 (376-434)||(26722531-26722589)
chr3 (378-481)||(51220558-51220660)
chr3 (378-434)||(26723906-26723962)
chr3 (376-436)||(51219460-51219520)
chr3 (378-481)||(32831045-32831148)
chr3 (378-436)||(53157176-53157233)
chr3 (455-493)||(54540775-54540813)
chr3 (378-434)||(21326320-21326376)
chr3 (378-434)||(40630627-40630683)
chr3 (378-434)||(54539500-54539556)
[»] chr7 (5 HSPs)
chr7 (378-482)||(9805380-9805484)
chr7 (376-481)||(35080281-35080386)
chr7 (378-481)||(35081556-35081659)
chr7 (378-427)||(23621990-23622039)
chr7 (378-434)||(12961984-12962040)
[»] chr5 (12 HSPs)
chr5 (376-481)||(5504091-5504196)
chr5 (378-489)||(3597323-3597435)
chr5 (378-436)||(124529-124587)
chr5 (378-481)||(5502918-5503020)
chr5 (378-481)||(121349-121452)
chr5 (376-434)||(3598924-3598982)
chr5 (377-436)||(14189663-14189722)
chr5 (378-436)||(14190487-14190545)
chr5 (376-434)||(17414542-17414600)
chr5 (376-430)||(17415695-17415749)
chr5 (455-493)||(28538754-28538792)
chr5 (378-434)||(8061856-8061912)
[»] chr8 (4 HSPs)
chr8 (378-481)||(13882655-13882758)
chr8 (378-426)||(13883878-13883926)
chr8 (378-434)||(38612219-38612275)
chr8 (378-434)||(38613419-38613475)
[»] scaffold0049 (1 HSPs)
scaffold0049 (456-493)||(7400-7437)
[»] scaffold1875 (1 HSPs)
scaffold1875 (378-434)||(756-812)
[»] scaffold0632 (1 HSPs)
scaffold0632 (457-493)||(3293-3329)


Alignment Details
Target: chr4 (Bit Score: 431; Significance: 0; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 17 - 494
Target Start/End: Complemental strand, 33998316 - 33997838
Alignment:
Q  17 tcacttacaatagtgctattgtgcttcctaacttcatcttg-acagattgaaaattgattcctttaaatgaagctttgatgaggtttctctattgtgact 115  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33998316 tcacttacaatagtgctattgtgcttcctaacttcatcttggacagattcaaaattgattcctttaaatgaagctttgatgaggtttctctattgtgact 33998217  T
Q  116 tgcattgaaagatttagcatcaattgcacctaaatgcttgtagggaccaatgtctctctttccaagctccatacttataccatacggatcccataactat 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||    
T  33998216 tgcattgaaagatttagcatcaattgcacctaaatgcttgtagggaccaatgtctctcttttcaagctccacacttataccatacggatcccataactat 33998117  T
Q  216 gttccttcaacacaaaagatttcaagttcataagggtgatgatatgttgttgccttcagaaatcagaacctgcattattcacagcactctttctcaagag 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33998116 gttccttcaacacaaaagatttcaagttcataagggtgatgatatgttgttgccttcagaaatcagaacctgcattattcacagcactctttctcaagag 33998017  T
Q  316 aatgcttgataatcactttatagctctttctgtcattgcccaaaactttcgcaaattatcttggctaaactacagttttgaccccctaagtttgctaatg 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33998016 aatgcttgataatcactttatagctctttctgtcattgcccaaaactttcgcaaattatcttggctaaactacagttttgaccccctaagtttgctaatg 33997917  T
Q  416 ttgcgattttggccccctaatnnnnnnnntgaaaattttgccccctaagatttagcccctttgcaattgtgatcctttg 494  Q
    ||||||||||| |||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33997916 ttgcgattttgaccccctaataaaaaaaatgaaaattttgccccctaagatttagcccctttgcaattgtgatcctttg 33997838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 378 - 481
Target Start/End: Original strand, 8747691 - 8747794
Alignment:
Q  378 ggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggccccctaatnnnnnnnntgaaaattttgccccctaagatttagccccttt 477  Q
    ||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||        |||| ||||||||||||| | ||||||||||||    
T  8747691 ggctaaactacagttttgaccccttaagtttgccaatgttgcgattttggccccctaataaaaaaaatgaatattttgccccctatgttttagccccttt 8747790  T
Q  478 gcaa 481  Q
    ||||    
T  8747791 gcaa 8747794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 378 - 436
Target Start/End: Complemental strand, 8749104 - 8749046
Alignment:
Q  378 ggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggccccctaat 436  Q
    |||||||||||| |||||||||| ||||||||| |||||||||||||||||||||||||    
T  8749104 ggctaaactacacttttgaccccttaagtttgccaatgttgcgattttggccccctaat 8749046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 378 - 482
Target Start/End: Complemental strand, 8897011 - 8896906
Alignment:
Q  378 ggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggccccctaatnnnnnnnntgaaaatttt-gccccctaagatttagcccctt 476  Q
    |||||||||||||||||||| |||||||||||| |||||| ||||||||| ||||||||        ||| |||||| | ||| ||||||||||||||||    
T  8897011 ggctaaactacagttttgactccctaagtttgccaatgttacgattttggtcccctaataaaaaaaatgataattttggtcccttaagatttagcccctt 8896912  T
Q  477 tgcaat 482  Q
    ||||||    
T  8896911 tgcaat 8896906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 376 - 436
Target Start/End: Complemental strand, 48157738 - 48157678
Alignment:
Q  376 ttggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggccccctaat 436  Q
    ||||||||||| ||||||||||||||||| |||  ||| | ||||||||||||||||||||    
T  48157738 ttggctaaactgcagttttgaccccctaactttcataaaggtgcgattttggccccctaat 48157678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 378 - 434
Target Start/End: Original strand, 40168639 - 40168695
Alignment:
Q  378 ggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggcccccta 434  Q
    ||||||||| ||||||||||||||||| |||   |||| ||||||||||||||||||    
T  40168639 ggctaaactgcagttttgaccccctaacttttacaatggtgcgattttggcccccta 40168695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 371 - 434
Target Start/End: Complemental strand, 9397500 - 9397437
Alignment:
Q  371 ttatcttggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggcccccta 434  Q
    |||| ||||||||||| || |||| |||||||||||||   ||||||| |||||||||||||||    
T  9397500 ttattttggctaaactgcacttttcaccccctaagttttaaaatgttgggattttggcccccta 9397437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 379 - 434
Target Start/End: Complemental strand, 40169836 - 40169781
Alignment:
Q  379 gctaaactacagttttgaccccctaagtttgctaatgttgcgattttggcccccta 434  Q
    |||||||| ||||||||||||||||| |||   |||| ||||||||||||||||||    
T  40169836 gctaaactgcagttttgaccccctaactttcacaatggtgcgattttggcccccta 40169781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 378 - 434
Target Start/End: Complemental strand, 1961228 - 1961172
Alignment:
Q  378 ggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggcccccta 434  Q
    ||||||| | || |||| ||||||||||||||| || ||||| ||||||||||||||    
T  1961228 ggctaaagtgcactttttaccccctaagtttgcaaaagttgcaattttggcccccta 1961172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 377 - 433
Target Start/End: Original strand, 9178634 - 9178690
Alignment:
Q  377 tggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggccccct 433  Q
    |||||||||| ||||||||||| ||||| |||  ||| | |||||||||||||||||    
T  9178634 tggctaaactgcagttttgacctcctaactttcataaaggtgcgattttggccccct 9178690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 374 - 434
Target Start/End: Original strand, 25011731 - 25011791
Alignment:
Q  374 tcttggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggcccccta 434  Q
    ||||||||||||| || ||||   |||||||||||   |||||||||||||||||||||||    
T  25011731 tcttggctaaactccacttttcgtcccctaagtttcaaaatgttgcgattttggcccccta 25011791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 378 - 434
Target Start/End: Complemental strand, 31435909 - 31435854
Alignment:
Q  378 ggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggcccccta 434  Q
    |||||||||||||||||| |||  || |||||| ||||||||||||||| |||||||    
T  31435909 ggctaaactacagttttggccct-tatgtttgccaatgttgcgattttgacccccta 31435854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 457 - 493
Target Start/End: Original strand, 31599869 - 31599905
Alignment:
Q  457 cccctaagatttagcccctttgcaattgtgatccttt 493  Q
    ||||||||||||||||||||||||| | |||||||||    
T  31599869 cccctaagatttagcccctttgcaactttgatccttt 31599905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 378 - 434
Target Start/End: Original strand, 55780387 - 55780443
Alignment:
Q  378 ggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggcccccta 434  Q
    ||||||||| || ||||  |||| ||||||| | |||||||||||||||||||||||    
T  55780387 ggctaaacttcatttttcgccccttaagttttcaaatgttgcgattttggcccccta 55780443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 378 - 434
Target Start/End: Original strand, 55844567 - 55844623
Alignment:
Q  378 ggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggcccccta 434  Q
    ||||||||| || ||||  |||| ||||||| | |||||||||||||||||||||||    
T  55844567 ggctaaacttcatttttcgccccttaagttttcaaatgttgcgattttggcccccta 55844623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 75; Significance: 3e-34; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 376 - 482
Target Start/End: Complemental strand, 27553867 - 27553761
Alignment:
Q  376 ttggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggccccctaatnnnnnnnntgaaaattttgccccctaagatttagcccct 475  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||        |||||||||||||||||||||||||||||||    
T  27553867 ttggctaaactacagttttaaccccctaagtttgctaatgttgcgattttggcctcctaataaaaaaaatgaaaattttgccccctaagatttagcccct 27553768  T
Q  476 ttgcaat 482  Q
    |||||||    
T  27553767 ttgcaat 27553761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 378 - 482
Target Start/End: Original strand, 27552452 - 27552556
Alignment:
Q  378 ggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggccccctaatnnnnnnnntgaaaattttgccccctaagatttagccccttt 477  Q
    ||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||        ||||||||| ||||||||||||||| |||||||    
T  27552452 ggctaaactacagttttgaccccctaaatttgccaatgttgcgattttggctccctaataaaaaaaatgaaaatttagccccctaagatttaaccccttt 27552551  T
Q  478 gcaat 482  Q
    |||||    
T  27552552 gcaat 27552556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 378 - 494
Target Start/End: Original strand, 12812836 - 12812953
Alignment:
Q  378 ggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggccccctaat-nnnnnnnntgaaaattttgccccctaagatttagcccctt 476  Q
    |||||| |||||||||||||| | ||||||||||||||||| |||||||||||||||||         | | ||||| ||||||||||||||||||||||    
T  12812836 ggctaagctacagttttgacctcttaagtttgctaatgttgagattttggccccctaataaaaaaaaataataatttagccccctaagatttagcccctt 12812935  T
Q  477 tgcaattgtgatcctttg 494  Q
    ||||||||||||||||||    
T  12812936 tgcaattgtgatcctttg 12812953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 378 - 481
Target Start/End: Original strand, 10851913 - 10852015
Alignment:
Q  378 ggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggccccctaatnnnnnnnntgaaaattttgccccctaagatttagccccttt 477  Q
    ||||||||||||||||||||||||||| |||   ||||||||||||||  |||||| ||        |||||||||| ||||||| | ||||||||||||    
T  10851913 ggctaaactacagttttgaccccctaactttatcaatgttgcgattttaaccccct-attaaaaaaatgaaaattttaccccctatgttttagccccttt 10852011  T
Q  478 gcaa 481  Q
    ||||    
T  10852012 gcaa 10852015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 376 - 434
Target Start/End: Complemental strand, 28851732 - 28851674
Alignment:
Q  376 ttggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggcccccta 434  Q
    ||||||||||| ||||||||||||||||| |||   ||||||||||||||| |||||||    
T  28851732 ttggctaaactgcagttttgaccccctaactttcacaatgttgcgattttgacccccta 28851674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 377 - 425
Target Start/End: Original strand, 24192244 - 24192291
Alignment:
Q  377 tggctaaactacagttttgaccccctaagtttgctaatgttgcgatttt 425  Q
    ||||||||||||||||||| ||||  |||||||||||||||||||||||    
T  24192244 tggctaaactacagttttggcccca-aagtttgctaatgttgcgatttt 24192291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 378 - 434
Target Start/End: Complemental strand, 45413535 - 45413479
Alignment:
Q  378 ggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggcccccta 434  Q
    ||||||||| ||||||||||||||||| |||   |||| ||||||||||||||||||    
T  45413535 ggctaaactgcagttttgaccccctaactttcacaatggtgcgattttggcccccta 45413479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 449 - 480
Target Start/End: Original strand, 28617993 - 28618024
Alignment:
Q  449 aattttgccccctaagatttagcccctttgca 480  Q
    ||||||||||||||||||||||||||||||||    
T  28617993 aattttgccccctaagatttagcccctttgca 28618024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 378 - 481
Target Start/End: Original strand, 45412335 - 45412438
Alignment:
Q  378 ggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggccccctaatnnnnnnnntgaaaattttgccccctaagatttagccccttt 477  Q
    ||||||||| ||||||||||||||||| |||   |||| |||||||||| ||||||| |        |||||||||   |||||| ||||||||||||||    
T  45412335 ggctaaactgcagttttgaccccctaactttcacaatggtgcgattttgaccccctattaaaaaaaatgaaaatttaaacccctatgatttagccccttt 45412434  T
Q  478 gcaa 481  Q
    ||||    
T  45412435 gcaa 45412438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 376 - 434
Target Start/End: Original strand, 1389231 - 1389289
Alignment:
Q  376 ttggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggcccccta 434  Q
    ||||||||||| ||||||| ||||||||| |||   |||| ||||||||||||||||||    
T  1389231 ttggctaaactgcagttttaaccccctaactttcagaatggtgcgattttggcccccta 1389289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 460 - 493
Target Start/End: Complemental strand, 1093164 - 1093131
Alignment:
Q  460 ctaagatttagcccctttgcaattgtgatccttt 493  Q
    ||||||||||||||||||||||| ||||||||||    
T  1093164 ctaagatttagcccctttgcaatagtgatccttt 1093131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 71; Significance: 6e-32; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 376 - 494
Target Start/End: Complemental strand, 46525902 - 46525784
Alignment:
Q  376 ttggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggccccctaatnnnnnnnntgaaaattttgccccctaagatttagcccct 475  Q
    |||||||| ||||||||||| |||||||||||||| |||||||||||||||||| ||||||        ||||||||| |||||||||||||||||||||    
T  46525902 ttggctaatctacagttttggccccctaagtttgccaatgttgcgattttggcctcctaataaaaaaaatgaaaatttggccccctaagatttagcccct 46525803  T
Q  476 ttgcaattgtgatcctttg 494  Q
    |||||||||||||| ||||    
T  46525802 ttgcaattgtgatcttttg 46525784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 115 - 228
Target Start/End: Complemental strand, 6230188 - 6230075
Alignment:
Q  115 ttgcattgaaagatttagcatcaattgcacctaaatgcttgtagggaccaatgtctctctttccaagctccatacttataccatacggatcccataacta 214  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||| || ||| ||||||  |||| ||  || |||||||| ||||| ||||     
T  6230188 ttgcattgaaagatttagcatcaattgcacataaatgcttgtagggaccaatatccctccttccaaattccagacagatgccatacgggtcccaaaactc 6230089  T
Q  215 tgttccttcaacac 228  Q
    ||||||||||||||    
T  6230088 tgttccttcaacac 6230075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 380 - 494
Target Start/End: Original strand, 46524542 - 46524656
Alignment:
Q  380 ctaaactacagttttgaccccctaagtttgctaatgttgcgattttggccccctaatnnnnnnnntgaaaattttgccccctaagatttagcccctttgc 479  Q
    |||||||||||||||| |||||||||||| | |||||||| ||||||| ||||| ||        | ||||||| |||||||||||||||||||||||||    
T  46524542 ctaaactacagttttggccccctaagtttaccaatgttgcaattttggtcccctgataaaaaaaataaaaatttggccccctaagatttagcccctttgc 46524641  T
Q  480 aattgtgatcctttg 494  Q
    |||||||||| ||||    
T  46524642 aattgtgatcttttg 46524656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 378 - 481
Target Start/End: Original strand, 46312065 - 46312169
Alignment:
Q  378 ggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggccccctaat-nnnnnnnntgaaaattttgccccctaagatttagcccctt 476  Q
    ||||||||||||||||||||||||||| ||| | |||||||||||||||||||||||||         |||||||||||||||||||  ||||| |||||    
T  46312065 ggctaaactacagttttgaccccctaactttaccaatgttgcgattttggccccctaataaaaaaaaatgaaaattttgccccctaaattttagtccctt 46312164  T
Q  477 tgcaa 481  Q
    |||||    
T  46312165 tgcaa 46312169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 378 - 481
Target Start/End: Complemental strand, 3000271 - 3000168
Alignment:
Q  378 ggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggccccctaatnnnnnnnntgaaaattttgccccctaagatttagccccttt 477  Q
    ||||||||||||||||||||||| ||| |||| ||||||||||||||||  || |||||        | |||||||||||||||||| ||||||||||||    
T  3000271 ggctaaactacagttttgaccccttaattttgttaatgttgcgattttgatcctctaataaaaaaaataaaaattttgccccctaagttttagccccttt 3000172  T
Q  478 gcaa 481  Q
    ||||    
T  3000171 gcaa 3000168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 378 - 482
Target Start/End: Original strand, 14204837 - 14204942
Alignment:
Q  378 ggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggccccctaatnnnnnnnntgaaaattttgcccc-ctaagatttagcccctt 476  Q
    |||||||||||||||||| |||| || |||||  |||| |||||||||||||| |||||        |||||||||| |||| |||||||||||||||||    
T  14204837 ggctaaactacagttttggccccttatgtttgacaatgctgcgattttggccctctaataaaaatattgaaaattttacccctctaagatttagcccctt 14204936  T
Q  477 tgcaat 482  Q
    ||||||    
T  14204937 tgcaat 14204942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 376 - 481
Target Start/End: Original strand, 2999489 - 2999593
Alignment:
Q  376 ttggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggccccctaatnnnnnnnntgaaaattttgccccctaagatttagcccct 475  Q
    |||||||||||||||||||||||| |||| ||||  |||||||||||||||  ||||||||        ||||||||||| |||||||  ||||||||||    
T  2999489 ttggctaaactacagttttgaccctctaactttgtcaatgttgcgattttgatcccctaat-aaaaaaatgaaaattttgacccctaaattttagcccct 2999587  T
Q  476 ttgcaa 481  Q
    ||||||    
T  2999588 ttgcaa 2999593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 378 - 425
Target Start/End: Complemental strand, 14512716 - 14512669
Alignment:
Q  378 ggctaaactacagttttgaccccctaagtttgctaatgttgcgatttt 425  Q
    |||||||||||||||||| |||||||||||| ||||||||||||||||    
T  14512716 ggctaaactacagttttggccccctaagtttactaatgttgcgatttt 14512669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 378 - 436
Target Start/End: Complemental strand, 50380030 - 50379972
Alignment:
Q  378 ggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggccccctaat 436  Q
    ||||||||| ||||||||||||||||| |||  ||| | ||||||||||| ||||||||    
T  50380030 ggctaaactgcagttttgaccccctaactttcataaaggtgcgattttggtcccctaat 50379972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 373 - 434
Target Start/End: Complemental strand, 43706962 - 43706901
Alignment:
Q  373 atcttggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggcccccta 434  Q
    |||||||||||||| || ||||  |||||||| |||   |||||||||||||||||||||||    
T  43706962 atcttggctaaactccactttttgccccctaatttttaaaatgttgcgattttggcccccta 43706901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 378 - 434
Target Start/End: Complemental strand, 2425527 - 2425471
Alignment:
Q  378 ggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggcccccta 434  Q
    ||||||||| || ||||  ||||||| ||||  ||||||||||||||||||||||||    
T  2425527 ggctaaactgcactttttgccccctatgtttcataatgttgcgattttggcccccta 2425471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 378 - 434
Target Start/End: Complemental strand, 28920955 - 28920899
Alignment:
Q  378 ggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggcccccta 434  Q
    ||||||||| || ||||  ||||||||||||   |||||||||||||||||||||||    
T  28920955 ggctaaacttcacttttcgccccctaagtttcaaaatgttgcgattttggcccccta 28920899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 378 - 434
Target Start/End: Complemental strand, 46313332 - 46313276
Alignment:
Q  378 ggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggcccccta 434  Q
    ||||||||| ||||||||||||||||| |||   || | ||||||||||||||||||    
T  46313332 ggctaaactgcagttttgaccccctaactttcacaaaggtgcgattttggcccccta 46313276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 67; Significance: 1e-29; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 376 - 494
Target Start/End: Original strand, 22417656 - 22417774
Alignment:
Q  376 ttggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggccccctaatnnnnnnnntgaaaattttgccccctaagatttagcccct 475  Q
    |||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||        |||||||||||  || ||||||||| ||| |    
T  22417656 ttggttaaactacagttttgaccccctaagtttgctaatgttacgattttggccccctaataaaaaaaatgaaaattttgttccttaagatttaaccctt 22417755  T
Q  476 ttgcaattgtgatcctttg 494  Q
    |||||||||||||||||||    
T  22417756 ttgcaattgtgatcctttg 22417774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 373 - 487
Target Start/End: Complemental strand, 22419000 - 22418886
Alignment:
Q  373 atcttggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggccccctaatnnnnnnnntgaaaattttgccccctaagatttagcc 472  Q
    |||| ||||||||||| |||||| |||||||||||||  |||||| ||||||| | ||||||||        ||||||||||||||||||||||||||||    
T  22419000 atctaggctaaactacggttttggccccctaagtttgtcaatgttacgatttttgtcccctaataaaaaaaatgaaaattttgccccctaagatttagcc 22418901  T
Q  473 cctttgcaattgtga 487  Q
    |||||||||||||||    
T  22418900 cctttgcaattgtga 22418886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 370 - 434
Target Start/End: Complemental strand, 6978203 - 6978139
Alignment:
Q  370 attatcttggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggcccccta 434  Q
    ||||||||||||||||| ||||||| ||||||||| |||   |||| |||||||||||| |||||    
T  6978203 attatcttggctaaactgcagttttaaccccctaactttcacaatggtgcgattttggctcccta 6978139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 378 - 434
Target Start/End: Original strand, 20409067 - 20409123
Alignment:
Q  378 ggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggcccccta 434  Q
    ||||||||| ||||||||||||||||| |||   |||| ||||||||||||||||||    
T  20409067 ggctaaactgcagttttgaccccctaactttcacaatggtgcgattttggcccccta 20409123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 378 - 433
Target Start/End: Original strand, 12181595 - 12181650
Alignment:
Q  378 ggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggccccct 433  Q
    ||||||||| ||||||||||| ||||| ||||  ||||||| ||||||||||||||    
T  12181595 ggctaaactgcagttttgacctcctaactttgtaaatgttgggattttggccccct 12181650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 376 - 426
Target Start/End: Original strand, 10120173 - 10120223
Alignment:
Q  376 ttggctaaactacagttttgaccccctaagtttgctaatgttgcgattttg 426  Q
    |||||||||| ||| ||||| |||||||||||||  |||||||||||||||    
T  10120173 ttggctaaacaacaattttggccccctaagtttgtcaatgttgcgattttg 10120223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 397 - 434
Target Start/End: Original strand, 15888990 - 15889027
Alignment:
Q  397 ccccctaagtttgctaatgttgcgattttggcccccta 434  Q
    |||||||||||||| |||||||| ||||||||||||||    
T  15888990 ccccctaagtttgcaaatgttgcaattttggcccccta 15889027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 378 - 434
Target Start/End: Complemental strand, 20410275 - 20410219
Alignment:
Q  378 ggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggcccccta 434  Q
    ||||||||| ||||||||||||||||| |||   |||| |||||||||| |||||||    
T  20410275 ggctaaactgcagttttgaccccctaacttttacaatggtgcgattttgacccccta 20410219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 67; Significance: 1e-29; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 376 - 482
Target Start/End: Complemental strand, 10584142 - 10584036
Alignment:
Q  376 ttggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggccccctaatnnnnnnnntgaaaattttgccccctaagatttagcccct 475  Q
    ||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||        | ||||||| |||||||||||||||||||||    
T  10584142 ttggctaaactacagttttgatcccctaagtttgccaatgttgcgattttggccccctaataaaaaaaattaaaatttggccccctaagatttagcccct 10584043  T
Q  476 ttgcaat 482  Q
    |||||||    
T  10584042 ttgcaat 10584036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 376 - 481
Target Start/End: Original strand, 32829738 - 32829843
Alignment:
Q  376 ttggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggccccctaatnnnnnnnntgaaaattttgccccctaagatttagcccct 475  Q
    ||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||        |||| ||||||||||||| | ||||||||||    
T  32829738 ttggctaaactacagttttgaccccctaagtttgccaattttgcgattttggccccctaataaaaaaaatgaatattttgccccctatgttttagcccct 32829837  T
Q  476 ttgcaa 481  Q
    ||||||    
T  32829838 ttgcaa 32829843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 376 - 434
Target Start/End: Original strand, 26722531 - 26722589
Alignment:
Q  376 ttggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggcccccta 434  Q
    |||||||||||||||||||| |||||||||||| | |||||||||||||||||||||||    
T  26722531 ttggctaaactacagttttggccccctaagtttaccaatgttgcgattttggcccccta 26722589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 378 - 481
Target Start/End: Complemental strand, 51220660 - 51220558
Alignment:
Q  378 ggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggccccctaatnnnnnnnntgaaaattttgccccctaagatttagccccttt 477  Q
    ||||||||||||||||||||||| ||||||||  |||||||||||||| ||||||||||        |||| ||||||||||||| | ||||||||||||    
T  51220660 ggctaaactacagttttgaccccttaagtttgtcaatgttgcgattttagccccctaat-aaaaaaatgaatattttgccccctatgttttagccccttt 51220562  T
Q  478 gcaa 481  Q
    ||||    
T  51220561 gcaa 51220558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 378 - 434
Target Start/End: Complemental strand, 26723962 - 26723906
Alignment:
Q  378 ggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggcccccta 434  Q
    |||||||||||||||||| |||||||||||| |||||||||| ||||||||||||||    
T  26723962 ggctaaactacagttttggccccctaagtttactaatgttgcaattttggcccccta 26723906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 376 - 436
Target Start/End: Original strand, 51219460 - 51219520
Alignment:
Q  376 ttggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggccccctaat 436  Q
    ||||||||||||||||||||||| ||||||||||  |||||||| ||||||||||||||||    
T  51219460 ttggctaaactacagttttgacctcctaagtttgtcaatgttgcaattttggccccctaat 51219520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 378 - 481
Target Start/End: Complemental strand, 32831148 - 32831045
Alignment:
Q  378 ggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggccccctaatnnnnnnnntgaaaattttgccccctaagatttagccccttt 477  Q
    |||||||||||||||||||||||||| |||||  ||||||||||||||| ||| |||||        ||||  |||||||||||| | ||||||||||||    
T  32831148 ggctaaactacagttttgaccccctatgtttgtcaatgttgcgattttgaccctctaataaaaaaaatgaattttttgccccctatgttttagccccttt 32831049  T
Q  478 gcaa 481  Q
    ||||    
T  32831048 gcaa 32831045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 378 - 436
Target Start/End: Complemental strand, 53157233 - 53157176
Alignment:
Q  378 ggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggccccctaat 436  Q
    ||||||||||||||||||||||| ||||||||| |||||||||||| |||||| |||||    
T  53157233 ggctaaactacagttttgacccc-taagtttgccaatgttgcgattctggccctctaat 53157176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 455 - 493
Target Start/End: Complemental strand, 54540813 - 54540775
Alignment:
Q  455 gccccctaagatttagcccctttgcaattgtgatccttt 493  Q
    ||||||||||||||||||||||||||| | |||||||||    
T  54540813 gccccctaagatttagcccctttgcaactttgatccttt 54540775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 378 - 434
Target Start/End: Original strand, 21326320 - 21326376
Alignment:
Q  378 ggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggcccccta 434  Q
    |||||||||||| |||||||||| ||||||| | ||| |||| ||||||| ||||||    
T  21326320 ggctaaactacacttttgaccccttaagtttaccaatattgcaattttggtccccta 21326376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 378 - 434
Target Start/End: Complemental strand, 40630683 - 40630627
Alignment:
Q  378 ggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggcccccta 434  Q
    ||||||| | || |||| ||||||||||||||| || ||||| ||||||||||||||    
T  40630683 ggctaaagtgcactttttaccccctaagtttgcaaaagttgcaattttggcccccta 40630627  T

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Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 378 - 434
Target Start/End: Complemental strand, 54539556 - 54539500
Alignment:
Q  378 ggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggcccccta 434  Q
    ||||||||| ||||||| ||||| ||| ||||  |||| ||||||||||||||||||    
T  54539556 ggctaaactgcagttttaaccccttaactttgacaatggtgcgattttggcccccta 54539500  T

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Target: chr7 (Bit Score: 65; Significance: 2e-28; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 378 - 482
Target Start/End: Complemental strand, 9805484 - 9805380
Alignment:
Q  378 ggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggccccctaatnnnnnnnntgaaaattttgccccctaagatttagccccttt 477  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||        ||||||||| ||||||| |||||||||||||||    
T  9805484 ggctaaactacagttttgaccccctaagtttgccaatgttgcgattttggccctctaatagaaaaaatgaaaatttggccccctgagatttagccccttt 9805385  T
Q  478 gcaat 482  Q
    |||||    
T  9805384 gcaat 9805380  T

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Target: chr7; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 376 - 481
Target Start/End: Original strand, 35080281 - 35080386
Alignment:
Q  376 ttggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggccccctaatnnnnnnnntgaaaattttgccccctaagatttagcccct 475  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||        |||| ||||||||||||| | ||||||||||    
T  35080281 ttggctaaactacagttttgaccccctaagtttgccaatgttgcgattttggtcccctaataaaaaaaatgaatattttgccccctatgttttagcccct 35080380  T
Q  476 ttgcaa 481  Q
    ||||||    
T  35080381 ttgcaa 35080386  T

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Target: chr7; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 378 - 481
Target Start/End: Complemental strand, 35081659 - 35081556
Alignment:
Q  378 ggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggccccctaatnnnnnnnntgaaaattttgccccctaagatttagccccttt 477  Q
    ||||||||||||||||||||||||||||||||  ||||||||||||||||| |||||||        |||| ||||||||||||| | ||||||||||||    
T  35081659 ggctaaactacagttttgaccccctaagtttgtcaatgttgcgattttggcgccctaataaaaaaaatgaatattttgccccctatgttttagccccttt 35081560  T
Q  478 gcaa 481  Q
    ||||    
T  35081559 gcaa 35081556  T

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Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 378 - 427
Target Start/End: Complemental strand, 23622039 - 23621990
Alignment:
Q  378 ggctaaactacagttttgaccccctaagtttgctaatgttgcgattttgg 427  Q
    |||||||||||||||||| || ||||||||||| ||||||||||||||||    
T  23622039 ggctaaactacagttttggcctcctaagtttgccaatgttgcgattttgg 23621990  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 378 - 434
Target Start/End: Original strand, 12961984 - 12962040
Alignment:
Q  378 ggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggcccccta 434  Q
    ||||||||| ||||||| ||||||||| |||   |||| ||||||||||||||||||    
T  12961984 ggctaaactgcagttttaaccccctaactttcacaatggtgcgattttggcccccta 12962040  T

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Target: chr5 (Bit Score: 54; Significance: 9e-22; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 376 - 481
Target Start/End: Complemental strand, 5504196 - 5504091
Alignment:
Q  376 ttggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggccccctaatnnnnnnnntgaaaattttgccccctaagatttagcccct 475  Q
    ||||||||||||||||||||||| | ||||||||| ||||||||||||||| |||||||||        |||| ||||||||||||| | ||||||||||    
T  5504196 ttggctaaactacagttttgacctcttaagtttgccaatgttgcgattttgaccccctaataaaaaaaatgaatattttgccccctatgttttagcccct 5504097  T
Q  476 ttgcaa 481  Q
    ||||||    
T  5504096 ttgcaa 5504091  T

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Target: chr5; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 378 - 489
Target Start/End: Original strand, 3597323 - 3597435
Alignment:
Q  378 ggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggccccctaatnnnnnnnntgaaaattttg-ccccctaagatttagcccctt 476  Q
    |||||||||||||||||| |||||||||||| |||||||||||||||||||||| || |        ||| |||||||  |||||| |||||||||||||    
T  3597323 ggctaaactacagttttggccccctaagtttactaatgttgcgattttggccccttattaaaaaaaatgataattttgatcccctatgatttagcccctt 3597422  T
Q  477 tgcaattgtgatc 489  Q
    |||||| ||||||    
T  3597423 tgcaatggtgatc 3597435  T

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Target: chr5; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 378 - 436
Target Start/End: Complemental strand, 124587 - 124529
Alignment:
Q  378 ggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggccccctaat 436  Q
    ||||||||||||||||||||| | ||||||||| |||||||||||||||||||||||||    
T  124587 ggctaaactacagttttgacctcttaagtttgccaatgttgcgattttggccccctaat 124529  T

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Target: chr5; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 378 - 481
Target Start/End: Original strand, 5502918 - 5503020
Alignment:
Q  378 ggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggccccctaatnnnnnnnntgaaaattttgccccctaagatttagccccttt 477  Q
    ||||||||||||||||||||||  ||||||||| |||||||| ||||||||||||||||        |||| ||||||||||||| | |||| |||||||    
T  5502918 ggctaaactacagttttgaccct-taagtttgccaatgttgcaattttggccccctaataaaaaaaatgaatattttgccccctatgttttaaccccttt 5503016  T
Q  478 gcaa 481  Q
    ||||    
T  5503017 gcaa 5503020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 378 - 481
Target Start/End: Original strand, 121349 - 121452
Alignment:
Q  378 ggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggccccctaatnnnnnnnntgaaaattttgccccctaagatttagccccttt 477  Q
    |||||||||||||||||||| | |||| ||||| |||||||| |||||| |||||||||        |||| |||||||||||||   ||||||||||||    
T  121349 ggctaaactacagttttgacactctaaatttgccaatgttgcaattttgaccccctaataaaaaaaatgaatattttgccccctatattttagccccttt 121448  T
Q  478 gcaa 481  Q
    ||||    
T  121449 gcaa 121452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 376 - 434
Target Start/End: Complemental strand, 3598982 - 3598924
Alignment:
Q  376 ttggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggcccccta 434  Q
    ||||||||||||||||||||  ||||||| ||| | |||||||||||||||||||||||    
T  3598982 ttggctaaactacagttttggtcccctaaatttaccaatgttgcgattttggcccccta 3598924  T

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Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 377 - 436
Target Start/End: Original strand, 14189663 - 14189722
Alignment:
Q  377 tggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggccccctaat 436  Q
    |||||||||| ||||||||||||||||| |||  ||| | ||||||||||| ||||||||    
T  14189663 tggctaaactgcagttttgaccccctaactttcataaaggtgcgattttggtcccctaat 14189722  T

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Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 378 - 436
Target Start/End: Complemental strand, 14190545 - 14190487
Alignment:
Q  378 ggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggccccctaat 436  Q
    ||||||||| ||||||||||||||||| |||  ||| | ||||||||||| ||||||||    
T  14190545 ggctaaactgcagttttgaccccctaactttcataaaggtgcgattttggtcccctaat 14190487  T

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Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 376 - 434
Target Start/End: Original strand, 17414542 - 17414600
Alignment:
Q  376 ttggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggcccccta 434  Q
    ||||||||||| |||||||||||| |||| |||   |||| ||||||||||||||||||    
T  17414542 ttggctaaactgcagttttgaccctctaacttttacaatggtgcgattttggcccccta 17414600  T

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Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 376 - 430
Target Start/End: Complemental strand, 17415749 - 17415695
Alignment:
Q  376 ttggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggccc 430  Q
    ||||||||||| ||||||||||||||||| |||   |||| ||||||||||||||    
T  17415749 ttggctaaactgcagttttgaccccctaactttcacaatggtgcgattttggccc 17415695  T

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Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 455 - 493
Target Start/End: Original strand, 28538754 - 28538792
Alignment:
Q  455 gccccctaagatttagcccctttgcaattgtgatccttt 493  Q
    ||||||||||||||||||||||||||| | |||||||||    
T  28538754 gccccctaagatttagcccctttgcaactttgatccttt 28538792  T

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Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 378 - 434
Target Start/End: Original strand, 8061856 - 8061912
Alignment:
Q  378 ggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggcccccta 434  Q
    ||||||||| ||||||| ||||||||| |||   |||| ||||||||||||||||||    
T  8061856 ggctaaactgcagttttaaccccctaactttcagaatggtgcgattttggcccccta 8061912  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 378 - 481
Target Start/End: Original strand, 13882655 - 13882758
Alignment:
Q  378 ggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggccccctaatnnnnnnnntgaaaattttgccccctaagatttagccccttt 477  Q
    |||||||||||| |||||| | ||||||||||| |||||||  |||||| |||||||||        |||| ||||||||||||| | ||||||||||||    
T  13882655 ggctaaactacaattttgatctcctaagtttgccaatgttgtaattttgaccccctaataaaaaaaatgaatattttgccccctatgttttagccccttt 13882754  T
Q  478 gcaa 481  Q
    ||||    
T  13882755 gcaa 13882758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 378 - 426
Target Start/End: Complemental strand, 13883926 - 13883878
Alignment:
Q  378 ggctaaactacagttttgaccccctaagtttgctaatgttgcgattttg 426  Q
    ||||||||||||||||||||||| ||||||||  |||||||||||||||    
T  13883926 ggctaaactacagttttgaccccttaagtttgtcaatgttgcgattttg 13883878  T

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Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 378 - 434
Target Start/End: Original strand, 38612219 - 38612275
Alignment:
Q  378 ggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggcccccta 434  Q
    ||||||||| ||||||||||||||||| |||   |||||||||||||||||||||||    
T  38612219 ggctaaactgcagttttgaccccctaactttcacaatgttgcgattttggcccccta 38612275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 378 - 434
Target Start/End: Complemental strand, 38613475 - 38613419
Alignment:
Q  378 ggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggcccccta 434  Q
    ||||||||| ||||||||||||||||| |||   |||||||||||||||||||||||    
T  38613475 ggctaaactgcagttttgaccccctaactttcacaatgttgcgattttggcccccta 38613419  T

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Target: scaffold0049 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 456 - 493
Target Start/End: Complemental strand, 7437 - 7400
Alignment:
Q  456 ccccctaagatttagcccctttgcaattgtgatccttt 493  Q
    |||||||||||||||||||||||||| | |||||||||    
T  7437 ccccctaagatttagcccctttgcaactttgatccttt 7400  T

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Target: scaffold1875 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold1875
Description:

Target: scaffold1875; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 378 - 434
Target Start/End: Original strand, 756 - 812
Alignment:
Q  378 ggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggcccccta 434  Q
    ||||||||| || |||| ||||| |||||||   |||||||||||||||||||||||    
T  756 ggctaaactgcacttttcaccccttaagtttcgaaatgttgcgattttggcccccta 812  T

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Target: scaffold0632 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0632
Description:

Target: scaffold0632; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 457 - 493
Target Start/End: Complemental strand, 3329 - 3293
Alignment:
Q  457 cccctaagatttagcccctttgcaattgtgatccttt 493  Q
    ||||||||||||||||||||||||| | |||||||||    
T  3329 cccctaagatttagcccctttgcaactttgatccttt 3293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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