View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16611_low_8 (Length: 504)

Name: NF16611_low_8
Description: NF16611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16611_low_8
NF16611_low_8
[»] chr4 (6 HSPs)
chr4 (1-488)||(1326769-1327256)
chr4 (186-465)||(4877397-4877676)
chr4 (1-238)||(44185860-44186103)
chr4 (388-465)||(44185777-44185854)
chr4 (1-82)||(4877714-4877795)
chr4 (108-144)||(4877676-4877712)
[»] chr3 (1 HSPs)
chr3 (146-488)||(5387951-5388269)
[»] chr8 (3 HSPs)
chr8 (93-436)||(26531929-26532269)
chr8 (206-373)||(26537257-26537427)
chr8 (1-56)||(26532285-26532340)
[»] scaffold0831 (1 HSPs)
scaffold0831 (270-436)||(1636-1802)
[»] chr7 (1 HSPs)
chr7 (386-472)||(6432150-6432236)
[»] chr5 (2 HSPs)
chr5 (32-182)||(18011246-18011396)
chr5 (206-239)||(41227737-41227770)


Alignment Details
Target: chr4 (Bit Score: 484; Significance: 0; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 484; E-Value: 0
Query Start/End: Original strand, 1 - 488
Target Start/End: Complemental strand, 1327256 - 1326769
Alignment:
Q  1 tttacatgctttgagatcatagcaacgaacccatttaacaccaccaagtcaaagtaccttttcacccactcgtcaggatcagtttctaccttcacccact 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  1327256 tttacatgctttgagatcatagcaacgaacccatttaacaccaccaagtcaaagtaccttttcacccactcgtcaggatcagtttctatcttcacccact 1327157  T
Q  101 cattaggatagctatcttgcatatccaacggtaaatgcgtagtaaagaagttctcattgctcaagttaaaagaaaccatgtatgcatcagctacattcgt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1327156 cattaggatagctatcttgcatatccaacggtaaatgcgtagtaaagaagttctcattgctcaagttaaaagaaaccatgtatgcatcagctacattcgt 1327057  T
Q  201 gttcgcccaccaatgacacattccattcaagtacaccttacgacctatatctataggcatatacaaatcaagtctcttccaagaatgacttcttacacta 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1327056 gttcgcccaccaatgacacattccattcaagtacaccttacgacctatatctataggcatatacaaatcaagtctcttccaagaatgacttcttacacta 1326957  T
Q  301 taaatctcccaaaaaggttgtggcgtggttggaagataattccaatcaacattgtcattaggtttatattgattaacataaacacgtcgaatgatcttat 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1326956 taaatctcccaaaaaggttgtggcgtggttggaagataattccaatcaacattgtcattaggtttatattgattaacataaacacgtcgaatgatcttat 1326857  T
Q  401 agtcgtcattaacagggtcataaccatatccatgaagatgaaaccaaacagtattaaaaggtaaaaactgagccgaactagaaggaac 488  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1326856 agtcgtcattaacagggtcataaccatatccatgaagatgaaaccaaacagtattaaaaggtaaaaactgagccgaactagaaggaac 1326769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 186 - 465
Target Start/End: Complemental strand, 4877676 - 4877397
Alignment:
Q  186 atcagctacattcgtgttcgcccaccaatgacacattccattcaagtacaccttacgacctatatctataggcatatacaaatcaagtctcttccaagaa 285  Q
    |||| ||||||| || |||| |||||||||||||| |||||||||||||||||| |||||||||  | |||||||||  ||||||||| ||||||||||     
T  4877676 atcatctacatttgtattcgtccaccaatgacacactccattcaagtacacctttcgacctatacttgtaggcatattgaaatcaagtttcttccaagag 4877577  T
Q  286 tgacttcttacactataaatctcccaaaaaggttgtggcgtggttggaagataattccaatcaacattgtcattaggtttatattgattaacataaacac 385  Q
    | |||||||| |||||||||||||||||||||   |||   |||||| |||||| |||||||||||||||||  |||||||||||  ||||||||||||     
T  4877576 ttacttcttagactataaatctcccaaaaagggcatggtacggttggcagataagtccaatcaacattgtcacaaggtttatattttttaacataaacat 4877477  T
Q  386 gtcgaatgatcttatagtcgtcattaacagggtcataaccatatccatgaagatgaaaccaaacagtattaaaaggtaaa 465  Q
    | ||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  4877476 gacgaatgatcttatagtcgttattaacagggtcatagccatatccatgaagatgaaaccaaacagtattaaaaggtaaa 4877397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 44186103 - 44185860
Alignment:
Q  1 tttacatgctttgagatcatagcaacgaacccatttaacaccaccaagtcaaagtaccttttc-----acccactcgtcaggatcagtttctacctt-ca 94  Q
    |||||||| |||||||||||||||||||||||||||||||||| |||||||||||| || |||     |||||||||||||||||| |||||  ||| ||    
T  44186103 tttacatggtttgagatcatagcaacgaacccatttaacaccaacaagtcaaagtatctcttctcttcacccactcgtcaggatcactttctctctttca 44186004  T
Q  95 cccactcattaggatagctatcttgcatatccaacggtaaatgcgtagtaaagaagttctcattgctcaagttaaaagaaaccatgtatgcatcagctac 194  Q
    |||| |||| |||||||||||||||||||||||| |||||||| ||||| ||||| || |||| |||||||||||||||||||||||||| |||||||||    
T  44186003 cccattcatcaggatagctatcttgcatatccaagggtaaatgtgtagttaagaaattatcatcgctcaagttaaaagaaaccatgtatggatcagctac 44185904  T
Q  195 attcgtgttcgcccaccaatgacacattccattcaagtacacct 238  Q
    |||||| | |||||||||||| |||| |||||||||||||||||    
T  44185903 attcgtatacgcccaccaatggcacaatccattcaagtacacct 44185860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 388 - 465
Target Start/End: Complemental strand, 44185854 - 44185777
Alignment:
Q  388 cgaatgatcttatagtcgtcattaacagggtcataaccatatccatgaagatgaaaccaaacagtattaaaaggtaaa 465  Q
    ||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  44185854 cgaatgatcttatagtcgtcattaatagggtcatagccatatccatgaagatgaaaccaaacagtattaaaaggtaaa 44185777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 4877795 - 4877714
Alignment:
Q  1 tttacatgctttgagatcatagcaacgaacccatttaacaccaccaagtcaaagtaccttttcacccactcgtcaggatcag 82  Q
    |||||||||||||||||||  ||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||||||    
T  4877795 tttacatgctttgagatcaatgcaacaaacccatttaacaccaccaagtcaaagtatctattcacccactcgtcaggatcag 4877714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 108 - 144
Target Start/End: Complemental strand, 4877712 - 4877676
Alignment:
Q  108 atagctatcttgcatatccaacggtaaatgcgtagta 144  Q
    ||||||||||||||||||||| |||||||| ||||||    
T  4877712 atagctatcttgcatatccaagggtaaatgtgtagta 4877676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 129; Significance: 1e-66; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 146 - 488
Target Start/End: Complemental strand, 5388269 - 5387951
Alignment:
Q  146 agaagttctcattgctcaagttaaaagaaaccatgtatgcatcagctacattcgtgttcgcccaccaatgacacattccattcaagtacaccttacgacc 245  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||| ||   | ||||||||||||||||||| |||||||||||||||             
T  5388269 agaagttctcattgctcaagttaaaagaaaccatgtatgcatcatctatatctctattcgcccaccaatgacacagtccattcaagtacac--------- 5388179  T
Q  246 tatatctataggcatatacaaatcaagtctcttccaagaatgacttcttacactataaatctcccaaaaaggttgtggcgtggttggaagataattccaa 345  Q
     |||  | ||||||| | ||||||||||||||||||| |               ||||||||||||||||||  ||||  ||||||| |||||| |||||    
T  5388178 -atacttgtaggcatttccaaatcaagtctcttccaatag--------------ataaatctcccaaaaagggcgtggtatggttgggagataagtccaa 5388094  T
Q  346 tcaacattgtcattaggtttatattgattaacataaacacgtcgaatgatcttatagtcgtcattaacagggtcataaccatatccatgaagatgaaacc 445  Q
    ||||||| ||| | ||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| |||||||||  |||||    
T  5388093 tcaacatcgtcgtgaggtttatattgattaacataaacacgacgaatgatcttatagtcgtcattaatagggtcataaccatacccatgaagacaaaacc 5387994  T
Q  446 aaacagtattaaaaggtaaaaactgagccgaactagaaggaac 488  Q
    |||||||||||||||||||| ||| |||||   ||||||||||    
T  5387993 aaacagtattaaaaggtaaagactcagccgggttagaaggaac 5387951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 90; Significance: 3e-43; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 93 - 436
Target Start/End: Complemental strand, 26532269 - 26531929
Alignment:
Q  93 cacccactcattaggatagctatcttgcatatccaacggtaaatgcgtagtaaagaagttctcattgctcaagttaaaagaaaccatgtatgcatcagct 192  Q
    |||||| |||| | |||| ||||||||||||||||| |||||  | |||||| | ||  ||||| |||||||||||||||||||||||||   |||| ||    
T  26532269 cacccattcatcatgatatctatcttgcatatccaagggtaacagtgtagtagaaaacatctcagtgctcaagttaaaagaaaccatgtaattatcatct 26532170  T
Q  193 acattcgtgttcgcccaccaatgacacattccattcaagtacaccttacgacctatatctataggcatatac---aaatcaagtctcttccaagaatgac 289  Q
           |  |||||||||||||||| | ||||||||||||||||||||||||| || || ||| |||||     |||||||||||||||||||| |||     
T  26532169 c------tcatcgcccaccaatgacataatccattcaagtacaccttacgacctgtacctctagccatatcgtctaaatcaagtctcttccaagagtgat 26532076  T
Q  290 ttcttacactataaatctcccaaaaaggttgtggcgtggttggaagataattccaatcaacattgtcattaggtttatattgattaacataaacacgtcg 389  Q
    ||||||  |||||||||||||||||||| |||||| |  |||| | |||| |||| ||||| ||||||| |||| |||| | || |  || ||||   ||    
T  26532075 ttcttatgctataaatctcccaaaaagggtgtggcttcattggcatataagtccagtcaactttgtcataaggtatataattataagtatgaacataacg 26531976  T
Q  390 aatgatcttatagtcgtcattaacagggtcataaccatatccatgaa 436  Q
    ||||||||||||||| ||||||||| ||||||||||| |||||||||    
T  26531975 aatgatcttatagtcatcattaacatggtcataaccacatccatgaa 26531929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 206 - 373
Target Start/End: Complemental strand, 26537427 - 26537257
Alignment:
Q  206 cccaccaatgacacattccattcaagtacaccttacgacctatatctataggcatatac---aaatcaagtctcttccaagaatgacttcttacactata 302  Q
    ||||||||| ||||| ||||||||||||||||||||||||| || ||  |||||||| |   |||||||||||||||||||| ||||| ||||| |||||    
T  26537427 cccaccaataacacaatccattcaagtacaccttacgacctttacctccaggcatatcctctaaatcaagtctcttccaagagtgactgcttacgctata 26537328  T
Q  303 aatctcccaaaaaggttgtggcgtggttggaagataattccaatcaacattgtcattaggtttatattgat 373  Q
    ||||||||||||||   ||||| | ||||| | |||| |||| | ||  |||||| |||||||||| ||||    
T  26537327 aatctcccaaaaagagcgtggccttgttggtatataagtccagttaaatttgtcagtaggtttataatgat 26537257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 26532340 - 26532285
Alignment:
Q  1 tttacatgctttgagatcatagcaacgaacccatttaacaccaccaagtcaaagta 56  Q
    |||||||||||| ||||||||||||| ||||||||||||||||||||||| |||||    
T  26532340 tttacatgctttaagatcatagcaacaaacccatttaacaccaccaagtctaagta 26532285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0831 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0831
Description:

Target: scaffold0831; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 270 - 436
Target Start/End: Original strand, 1636 - 1802
Alignment:
Q  270 aagtctcttccaagaatgacttcttacactataaatctcccaaaaaggttgtggcgtggttggaagataattccaatcaacattgtcattaggtttatat 369  Q
    |||||| |||||||| | || | |||||||||||||||||||||| |    ||| || ||||| |||||| ||||||||||| |||||||||||| |||     
T  1636 aagtcttttccaagagttacattttacactataaatctcccaaaaggaccttggtgtcgttggcagataagtccaatcaacactgtcattaggttgataa 1735  T
Q  370 tgattaacataaacacgtcgaatgatcttatagtcgtcattaacagggtcataaccatatccatgaa 436  Q
    | |  ||  | |||| | ||||  ||||||||||||| ||||||| ||||||||||| |||||||||    
T  1736 taagaaatgttaacatgacgaacaatcttatagtcgttattaacatggtcataaccaaatccatgaa 1802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 386 - 472
Target Start/End: Complemental strand, 6432236 - 6432150
Alignment:
Q  386 gtcgaatgatcttatagtcgtcattaacagggtcataaccatatccatgaagatgaaaccaaacagtattaaaaggtaaaaactgag 472  Q
    ||||||||||||||   |||||||| ||| |||||||||||||||||| |||| || ||| |  ||||| |||||||| ||||||||    
T  6432236 gtcgaatgatcttaacatcgtcattgacatggtcataaccatatccattaagacgacacctagtagtatcaaaaggtacaaactgag 6432150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 32 - 182
Target Start/End: Original strand, 18011246 - 18011396
Alignment:
Q  32 catttaacaccaccaagtcaaagtaccttttcacccactcgtcaggatcagtttctaccttcacccactcattaggatagctatcttgcatatccaacgg 131  Q
    ||||||||||||||||||||||||| || ||| | ||||| |  ||| || |||||   |||||| |||| | |  ||  |||||||| ||||||||  |    
T  18011246 catttaacaccaccaagtcaaagtatctcttcgcacactcctttggagcactttctcttttcacctactcctcacaatttctatcttgaatatccaagag 18011345  T
Q  132 taaatgcgtagtaaagaagttctcattgctcaagttaaaagaaaccatgta 182  Q
    ||||||| ||||||||||   |||| ||| |||||||||||||| ||||||    
T  18011346 taaatgcttagtaaagaacacctcactgcacaagttaaaagaaatcatgta 18011396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 206 - 239
Target Start/End: Complemental strand, 41227770 - 41227737
Alignment:
Q  206 cccaccaatgacacattccattcaagtacacctt 239  Q
    |||||||||||||||||||||||| |||||||||    
T  41227770 cccaccaatgacacattccattcatgtacacctt 41227737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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