View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16611_low_9 (Length: 478)

Name: NF16611_low_9
Description: NF16611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16611_low_9
NF16611_low_9
[»] chr6 (17 HSPs)
chr6 (8-401)||(26801785-26802159)
chr6 (253-477)||(27725249-27725477)
chr6 (359-474)||(27718787-27718902)
chr6 (368-471)||(27698903-27699006)
chr6 (186-311)||(27593558-27593683)
chr6 (188-311)||(27678445-27678568)
chr6 (211-311)||(27706980-27707080)
chr6 (260-413)||(28785863-28786026)
chr6 (197-348)||(27531771-27531924)
chr6 (30-116)||(27532428-27532515)
chr6 (256-313)||(27699026-27699083)
chr6 (417-478)||(26655711-26655772)
chr6 (417-478)||(26761682-26761743)
chr6 (355-401)||(27531665-27531711)
chr6 (354-401)||(31283996-31284043)
chr6 (366-394)||(27338557-27338585)
chr6 (366-394)||(27399297-27399325)
[»] scaffold0349 (4 HSPs)
scaffold0349 (253-477)||(3826-4054)
scaffold0349 (359-474)||(8209-8324)
scaffold0349 (368-471)||(14764-14867)
scaffold0349 (253-313)||(14887-14947)
[»] scaffold0277 (2 HSPs)
scaffold0277 (207-386)||(5152-5340)
scaffold0277 (409-472)||(5086-5150)
[»] chr4 (3 HSPs)
chr4 (366-425)||(18724518-18724576)
chr4 (355-420)||(18699866-18699930)
chr4 (366-425)||(18680022-18680080)
[»] chr1 (1 HSPs)
chr1 (200-346)||(28128684-28128829)
[»] scaffold1254 (1 HSPs)
scaffold1254 (365-425)||(379-438)
[»] scaffold0419 (1 HSPs)
scaffold0419 (365-425)||(7191-7250)


Alignment Details
Target: chr6 (Bit Score: 291; Significance: 1e-163; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 8 - 401
Target Start/End: Original strand, 26801785 - 26802159
Alignment:
Q  8 ggacatcatctgagagaaaataaatgacatgcaaatccacatggaagatgagaaggaatttcagacttggtggtaaaatgtaaagccaaaacttgagaaa 107  Q
    |||||| || ||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||      
T  26801785 ggacataatatgagagaaaataaatgaaatgcaaatctacatggaagatgagaaggaatttcagacatggtggtaaaatgtaaagccaaa-cttgaga-- 26801881  T
Q  108 ataaatggacaagagaaaataaatgttaagtaacctaatcttgttaaaatgaaaatacgatcagaactttttgatgcattcattaccaactttctttaat 207  Q
                    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26801882 ----------------aaataaatgttaagtaacctaatcttgttaaaatgaaaatacgatcagaactttttgatgcattcattaccaactttctttaat 26801965  T
Q  208 tagatgtttgaatggaagagcttgcatttattttaatttcatgtaatttaacacactgattaattaagtaacaaagtgaaaaattacatgcaacagaaga 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26801966 tagatgtttgaatggaagagcttgcatttattttaatttcatgtagtttaacacactgattaattaagtaacaaagtgaaaaattacatgcaacagaaga 26802065  T
Q  308 ataaaagcagttgaaaactaaatcatgttaaaagtcttgtacacttatatttattgtatgattggtccacacggctataggaagtggtcaggaa 401  Q
     |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  26802066 gtaaaagtagttgaaaactaaatcatgttaaaagtcttgtacacttatatttattgtatgattggtccacacggctataggaagtggccaggaa 26802159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 253 - 477
Target Start/End: Complemental strand, 27725477 - 27725249
Alignment:
Q  253 atttaacacactgattaattaagtaacaaagtgaaaaattacatgcaacagaagaataaaagcagttgaaaactaaatcatgttaaaagtcttg---tac 349  Q
    |||||||||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||| ||||||||| ||||||||||||||||   |||    
T  27725477 atttaacacactgagtaattaagtaacaaagtgaaaaattacattcagcagaagaataaaagcagttcaaaactaaaacatgttaaaagtcttgtaatac 27725378  T
Q  350 acttatatttattgtatgattggt-ccacacggctataggaagtggtcaggaaagtttcagagaccatttttctcat-tgttataaagttacttatcaaa 447  Q
    | | |||||||||||||||||||| ||||||||||||||||||||| |||| |||||||||||||||||||||||||  |||||||||||||||||||||    
T  27725377 aatgatatttattgtatgattggtcccacacggctataggaagtggccagg-aagtttcagagaccatttttctcataagttataaagttacttatcaaa 27725279  T
Q  448 gacttcagatcacagaacacaaaaatttac 477  Q
    ||||||| || ||||| |||||||||||||    
T  27725278 gacttcacataacagaccacaaaaatttac 27725249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 359 - 474
Target Start/End: Complemental strand, 27718902 - 27718787
Alignment:
Q  359 tattgtatgattggtccacacggctataggaagtggtcaggaaagtttcagagaccatttttctcattgttataaagttacttatcaaagacttcagatc 458  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  27718902 tattgtatgattggtccacacggctataggaagtggtcaggaaagtttcagagaccatttttctcattgttataaagttacttatcaaagacttcacatc 27718803  T
Q  459 acagaacacaaaaatt 474  Q
    ||||||||||||||||    
T  27718802 acagaacacaaaaatt 27718787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 368 - 471
Target Start/End: Complemental strand, 27699006 - 27698903
Alignment:
Q  368 attggtccacacggctataggaagtggtcaggaaagtttcagagaccatttttctcattgttataaagttacttatcaaagacttcagatcacagaacac 467  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||    
T  27699006 attggtccacacggctataggaagtggtcaggaaagtttcaaagaccatttttctccttgttataaagttacttatcaaagacttcacatcacagaacac 27698907  T
Q  468 aaaa 471  Q
    ||||    
T  27698906 aaaa 27698903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 186 - 311
Target Start/End: Complemental strand, 27593683 - 27593558
Alignment:
Q  186 ttcattaccaactttctttaattagatgtttgaatggaagagcttgcatttattttaatttcatgtaatttaacacactgattaattaagtaacaaagtg 285  Q
    |||||||| |||| |||||||||  |||||||||||| | |||||| |||||||||||  ||||||||||||| ||||||||||||||||||||||||||    
T  27593683 ttcattactaactgtctttaattgtatgtttgaatggcatagcttgtatttattttaagctcatgtaatttaagacactgattaattaagtaacaaagtg 27593584  T
Q  286 aaaaattacatgcaacagaagaataa 311  Q
    |||||||||||||| |||||||||||    
T  27593583 aaaaattacatgcagcagaagaataa 27593558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 188 - 311
Target Start/End: Original strand, 27678445 - 27678568
Alignment:
Q  188 cattaccaactttctttaattagatgtttgaatggaagagcttgcatttattttaatttcatgtaatttaacacactgattaattaagtaacaaagtgaa 287  Q
    |||||| |||| |||||||||  |||||||||||| | |||||| |||||||||||  ||||||||||||| | ||||||||||||||||||||||||||    
T  27678445 cattactaactgtctttaattgtatgtttgaatggcatagcttgtatttattttaagctcatgtaatttaagatactgattaattaagtaacaaagtgaa 27678544  T
Q  288 aaattacatgcaacagaagaataa 311  Q
    |||||||||||| |||||||||||    
T  27678545 aaattacatgcagcagaagaataa 27678568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 211 - 311
Target Start/End: Complemental strand, 27707080 - 27706980
Alignment:
Q  211 atgtttgaatggaagagcttgcatttattttaatttcatgtaatttaacacactgattaattaagtaacaaagtgaaaaattacatgcaacagaagaata 310  Q
    |||||||||||| | |||||| |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||    
T  27707080 atgtttgaatggcatagcttgtatttattttaagctcatgtaatttaacacactgattaattaagtaacaaagtgaaaaattaaatgcagcagaagaata 27706981  T
Q  311 a 311  Q
    |    
T  27706980 a 27706980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 260 - 413
Target Start/End: Original strand, 28785863 - 28786026
Alignment:
Q  260 acactgattaattaagtaacaaagtgaaaaattacatgcaacagaaga----ataaaagcagttgaaaactaaatcatgttaaaagtc---ttgtacact 352  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||    |||||||||||| ||||||||| |||||||||||||   | ||||| |    
T  28785863 acactgattaattaagtaacaaagtgaaaaattacatgcagcagaagaatatataaaagcagttcaaaactaaaacatgttaaaagtcatgtagtacaat 28785962  T
Q  353 tatatttattgt----atgattggtccacacggctataggaagtggtcaggaaagtttcagagac 413  Q
     ||||||| | |    |||||||||||||||||||||||||||||| |||| |||||||||||||    
T  28785963 gatatttagtatatacatgattggtccacacggctataggaagtggccagg-aagtttcagagac 28786026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 197 - 348
Target Start/End: Complemental strand, 27531924 - 27531771
Alignment:
Q  197 ctttctttaattagatgtttgaatggaagagcttgcatttattttaatttcatgtaatttaacacactgattaattaagtaacaaagtgaaaaattacat 296  Q
    |||||||| ||||| |||||||||| || || |||||||||||||||  |||||| ||||||||   |||||||||||||||||||||||||| ||||||    
T  27531924 ctttctttgattagttgtttgaatgaaatagtttgcatttattttaagctcatgttatttaacat--tgattaattaagtaacaaagtgaaaatttacat 27531827  T
Q  297 gcaacagaaga----ataaaagcagttgaaaactaaatcatgttaaaagtcttgta 348  Q
     || |||||||    |||||||||||||||||||||| | ||| ||||||||||||    
T  27531826 tcagcagaagaatatataaaagcagttgaaaactaaaacttgtaaaaagtcttgta 27531771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 30 - 116
Target Start/End: Complemental strand, 27532515 - 27532428
Alignment:
Q  30 aatgacatgcaaatccacatggaagatgagaaggaa-tttcagacttggtggtaaaatgtaaagccaaaacttgagaaaataaatgga 116  Q
    |||||| |||||||| ||| |||||||||||||||| ||||||||||| |||||||||||| ||||||||||| ||||||||||||||    
T  27532515 aatgacttgcaaatcaacacggaagatgagaaggaagtttcagacttgatggtaaaatgtagagccaaaactttagaaaataaatgga 27532428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 256 - 313
Target Start/End: Complemental strand, 27699083 - 27699026
Alignment:
Q  256 taacacactgattaattaagtaacaaagtgaaaaattacatgcaacagaagaataaaa 313  Q
    ||||||||||| ||||||||||||||||||||||||||||| || |||| ||||||||    
T  27699083 taacacactgagtaattaagtaacaaagtgaaaaattacattcagcagatgaataaaa 27699026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 417 - 478
Target Start/End: Original strand, 26655711 - 26655772
Alignment:
Q  417 ttttctcattgttataaagttacttatcaaagacttcagatcacagaacacaaaaatttact 478  Q
    ||||||| |||||||||||||||||| ||||||||| | |||||||| |||||||| |||||    
T  26655711 ttttctccttgttataaagttacttaccaaagactttacatcacagaccacaaaaacttact 26655772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 417 - 478
Target Start/End: Original strand, 26761682 - 26761743
Alignment:
Q  417 ttttctcattgttataaagttacttatcaaagacttcagatcacagaacacaaaaatttact 478  Q
    ||||||| |||||||||||||||||| ||||||||| | |||||||| |||||||| |||||    
T  26761682 ttttctccttgttataaagttacttaccaaagactttacatcacagaccacaaaaacttact 26761743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 355 - 401
Target Start/End: Complemental strand, 27531711 - 27531665
Alignment:
Q  355 tatttattgtatgattggtccacacggctataggaagtggtcaggaa 401  Q
    |||||| ||||||||||||||||||||||||||||||| | ||||||    
T  27531711 tatttaatgtatgattggtccacacggctataggaagttgccaggaa 27531665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 354 - 401
Target Start/End: Original strand, 31283996 - 31284043
Alignment:
Q  354 atatttattgtatgattggtccacacggctataggaagtggtcaggaa 401  Q
    ||||||| ||| |||||||||||||||||||||| |||||| ||||||    
T  31283996 atatttactgtgtgattggtccacacggctatagcaagtggccaggaa 31284043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 366 - 394
Target Start/End: Complemental strand, 27338585 - 27338557
Alignment:
Q  366 tgattggtccacacggctataggaagtgg 394  Q
    |||||||||||||||||||||||||||||    
T  27338585 tgattggtccacacggctataggaagtgg 27338557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 366 - 394
Target Start/End: Complemental strand, 27399325 - 27399297
Alignment:
Q  366 tgattggtccacacggctataggaagtgg 394  Q
    |||||||||||||||||||||||||||||    
T  27399325 tgattggtccacacggctataggaagtgg 27399297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 144; Significance: 2e-75; HSPs: 4)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 253 - 477
Target Start/End: Complemental strand, 4054 - 3826
Alignment:
Q  253 atttaacacactgattaattaagtaacaaagtgaaaaattacatgcaacagaagaataaaagcagttgaaaactaaatcatgttaaaagtcttg---tac 349  Q
    |||||||||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||| ||||||||| ||||||||||||||||   |||    
T  4054 atttaacacactgagtaattaagtaacaaagtgaaaaattacattcagcagaagaataaaagcagttcaaaactaaaacatgttaaaagtcttgtaatac 3955  T
Q  350 acttatatttattgtatgattggt-ccacacggctataggaagtggtcaggaaagtttcagagaccatttttctcat-tgttataaagttacttatcaaa 447  Q
    | | |||||||||||||||||||| ||||||||||||||||||||| |||| |||||||||||||||||||||||||  |||||||||||||||||||||    
T  3954 aatgatatttattgtatgattggtcccacacggctataggaagtggccagg-aagtttcagagaccatttttctcataagttataaagttacttatcaaa 3856  T
Q  448 gacttcagatcacagaacacaaaaatttac 477  Q
    ||||||| || ||||| |||||||||||||    
T  3855 gacttcacataacagaccacaaaaatttac 3826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 359 - 474
Target Start/End: Complemental strand, 8324 - 8209
Alignment:
Q  359 tattgtatgattggtccacacggctataggaagtggtcaggaaagtttcagagaccatttttctcattgttataaagttacttatcaaagacttcagatc 458  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  8324 tattgtatgattggtccacacggctataggaagtggtcaggaaagtttcagagaccatttttctcattgttataaagttacttatcaaagacttcacatc 8225  T
Q  459 acagaacacaaaaatt 474  Q
    ||||||||||||||||    
T  8224 acagaacacaaaaatt 8209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 368 - 471
Target Start/End: Complemental strand, 14867 - 14764
Alignment:
Q  368 attggtccacacggctataggaagtggtcaggaaagtttcagagaccatttttctcattgttataaagttacttatcaaagacttcagatcacagaacac 467  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||    
T  14867 attggtccacacggctataggaagtggtcaggaaagtttcaaagaccatttttctccttgttataaagttacttatcaaagacttcacatcacagaacac 14768  T
Q  468 aaaa 471  Q
    ||||    
T  14767 aaaa 14764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 253 - 313
Target Start/End: Complemental strand, 14947 - 14887
Alignment:
Q  253 atttaacacactgattaattaagtaacaaagtgaaaaattacatgcaacagaagaataaaa 313  Q
    |||||||||||||| ||||||||||||||||||||||||||||| || |||| ||||||||    
T  14947 atttaacacactgagtaattaagtaacaaagtgaaaaattacattcagcagatgaataaaa 14887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277 (Bit Score: 84; Significance: 1e-39; HSPs: 2)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 207 - 386
Target Start/End: Complemental strand, 5340 - 5152
Alignment:
Q  207 ttagatgtttgaatggaagagcttgcatttattttaatttcatgtaatttaacacactgattaattaagtaacaaagtgaaaaattacatgcaacagaag 306  Q
    |||||||||| ||||  | |||||||||||||||| ||||||||| |||||||||  |||||||||||||||||||||||||||||||||||| ||||||    
T  5340 ttagatgtttaaatgacatagcttgcatttatttttatttcatgttatttaacac--tgattaattaagtaacaaagtgaaaaattacatgcagcagaag 5243  T
Q  307 a----ataaaagcagttgaaaactaaatcatgttaaaagtctt---gtacacttatatttattgt----atgattggtccacacggctata 386  Q
    |    |||||||||||| ||||||||| |||||||||||||||   ||||| | ||||||| |||    ||||||||||||||||||||||    
T  5242 aatttataaaagcagttcaaaactaaaacatgttaaaagtcttgtagtacaatgatatttactgtatacatgattggtccacacggctata 5152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 409 - 472
Target Start/End: Complemental strand, 5150 - 5086
Alignment:
Q  409 gagaccatttttctcatt-gttataaagttacttatcaaagacttcagatcacagaacacaaaaa 472  Q
    |||||||||||||||||  ||||||||||||| |||||| ||||| | |||||||| ||||||||    
T  5150 gagaccatttttctcataagttataaagttacctatcaaggactttacatcacagaccacaaaaa 5086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 366 - 425
Target Start/End: Complemental strand, 18724576 - 18724518
Alignment:
Q  366 tgattggtccacacggctataggaagtggtcaggaaagtttcagagaccatttttctcat 425  Q
    |||||||||||||||||||||||||||||||||| |||||| | ||||||||||| ||||    
T  18724576 tgattggtccacacggctataggaagtggtcagg-aagtttaacagaccatttttgtcat 18724518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 355 - 420
Target Start/End: Complemental strand, 18699930 - 18699866
Alignment:
Q  355 tatttattgtatgattggtccacacggctataggaagtggtcaggaaagtttcagagaccattttt 420  Q
    |||||| ||| ||||||||||||||||||||||||||| |||||| |||||| | |||||||||||    
T  18699930 tatttaatgtgtgattggtccacacggctataggaagtagtcagg-aagtttaacagaccattttt 18699866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 366 - 425
Target Start/End: Complemental strand, 18680080 - 18680022
Alignment:
Q  366 tgattggtccacacggctataggaagtggtcaggaaagtttcagagaccatttttctcat 425  Q
    ||||||||||||||||||||||||||| |||||| |||||| | ||||||||||| ||||    
T  18680080 tgattggtccacacggctataggaagtagtcagg-aagtttaacagaccatttttgtcat 18680022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 200 - 346
Target Start/End: Complemental strand, 28128829 - 28128684
Alignment:
Q  200 tctttaattagatgtttgaatggaagagcttgcatttattttaattt------catgtaatttaacacactgattaattaagtaacaaagtgaaaaatta 293  Q
    ||||||||||||||||| ||| | | |||||||||||||||| ||||      ||||| |||||||||      | ||||||||||| | ||||||||||    
T  28128829 tctttaattagatgttttaatagcatagcttgcatttatttttattttcagttcatgttatttaacac------tgattaagtaacaga-tgaaaaatta 28128737  T
Q  294 catgcaacagaagaataaaagcagttgaaaactaaatcatgttaaaagtcttg 346  Q
    |||||| |||||||||||||||||||| ||| ||||   ||| ||||||||||    
T  28128736 catgcagcagaagaataaaagcagttgtaaaataaaatttgtaaaaagtcttg 28128684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1254 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold1254
Description:

Target: scaffold1254; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 365 - 425
Target Start/End: Complemental strand, 438 - 379
Alignment:
Q  365 atgattggtccacacggctataggaagtggtcaggaaagtttcagagaccatttttctcat 425  Q
    |||||||||||||||||||||||||||||| || | |||||||| ||||||||||| ||||    
T  438 atgattggtccacacggctataggaagtggccaag-aagtttcacagaccatttttgtcat 379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 365 - 425
Target Start/End: Original strand, 7191 - 7250
Alignment:
Q  365 atgattggtccacacggctataggaagtggtcaggaaagtttcagagaccatttttctcat 425  Q
    |||||||||||||||||||||||||||||| || | |||||||| ||||||||||| ||||    
T  7191 atgattggtccacacggctataggaagtggccaag-aagtttcacagaccatttttgtcat 7250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University